Carg18011-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAGGAAAAACAGTTGGGCGCTCTATATATATTCTTAGATTAGGGTTTCTGGTTGTAACCCTTTCGGCGTCGATCGGCAGCTTTCTCTACTTCCACCATGGTTGCCGCGAAGAAGACCGTGAGTTTCTCATCCCTTTCCCGCCCATTTCTTCCTCTTCGGCTTATTGCTGGGATTGGTTTCTATGTTTCGCATTTGATTTTGTTTAGGAACGAAGGAATAGCTGGCGGATTTAGGTTTTTCTCCTCCGTCGTTTTTGTTTTGGAGAGGTCTGACATTTTTTCTGTTGTGAAAATTTCACAGAAGAAGACTCATGAGAGTATCAACAATAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTATTCTATTCACTAAGATTTCATATTTGCGCTACTGATCTGATCTCTGGACTTTGCCTCAGTGTATGTTTGTTCGTTGTTAATCCAGTTCAGTAGGCATTTTATTATTTTTTTTTTCACGGTTGACATTCGGTTGATTTTCAGCCGTCCAGTTATTATAGTTAGGAATAGTTTTCAATGAAATTACTGAAACTTTCGAATCAAAGGTTGTTACCTACAGCATTAAAAGCATTGACAGGATTTTCTTTTTATTATTGTCATTGGCCTAATCCTTCATCCAATAGTTTATTCGAGTTACTAAGGTTGATATCCCCTTGATTGACATTACTACGTTCACGTATTATTCTTTGAGAAGTAAAGGGATTCGTAGTGTCTTATTTGTTATCCATCTTTTGGTAAAGCCTTTTCATACGAGGTTATATATTATGTTCTTTTTGTTTGCAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCAGAGATTGAGTATTATGCGATGTTGGCTAAGGTTGGAGTTCACCATTACAACGGAAGTACGTTCCTAGCCCTTTTAATTAAGAATTAGCTTGTTTTTCGGCACTGCATTTTAGTTTATCGTATTATCAGTTTACGAGAATGTATTGCCTACTCATGTGTTGGCTAATTATGGGTTGTGAACTTCATAAAATTGAGGTAGAATCGTTAGATTTCTGAATGAACTTTCCCTTGACTTAAGCACTTGTCTCTACACATCCCGACTATGTCCAAGCTTTTTGATTGCTGATCCTCATTATTGGTTTATCTCTTATTCTGCATAAGAAGTTTGATTATGGGATGCAATTGATTTTCCAGAAGACTCACTGTGAGCAAATATCTCTCTTGAATGTTGTCAGGCAATGTAGATCTTGGAACTGCATGTGGAAAGTATTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGTATACAGTTTTCTCTGATCAAAACTAAAATTTTGGGTGACTTCCTTGCTTAATGGTTCTGATCTTGAGTTTGGAATTATTTTCAGGCGATTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAGTTTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGTGAACATAGTGATGTGTTCCGCTTGCGAAGCATGTTATTATCGATCGAATGGTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGATGTTCCACACTACCCCTAACCGATTCCAAGC AAAAAGGAAAAACAGTTGGGCGCTCTATATATATTCTTAGATTAGGGTTTCTGGTTGTAACCCTTTCGGCGTCGATCGGCAGCTTTCTCTACTTCCACCATGGTTGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAATAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCAGAGATTGAGTATTATGCGATGTTGGCTAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCATGTGGAAAGTATTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGCGATTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAGTTTGCAACTTCCTCTCAGATCATAGATTTTTGTTTCAGAGTTTCTTTTTCAATCCATTTAATTTTGGGGTGAACATAGTGATGTGTTCCGCTTGCGAAGCATGTTATTATCGATCGAATGGTTTCAATATAAACTTTTTATGTATGCCAGATCTTATTCCAGAATACTTGTTATATTATCTTGATGTTCCACACTACCCCTAACCGATTCCAAGC ATGGTTGCCGCGAAGAAGACCAAGAAGACTCATGAGAGTATCAACAATAGGCTCGCTCTCGTCATGAAGAGTGGGAAATATACATTGGGATACAAAACCGTTCTCAAGACCTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCAGAGATTGAGTATTATGCGATGTTGGCTAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTAGATCTTGGAACTGCATGTGGAAAGTATTACAGAGTATGCTGCCTCAGTATTATCGATCCTGGCGATTCTGATATCATCAAGAGCATTCCCGGAGACAGTTAG MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSIPGDS
BLAST of Carg18011-RA vs. NCBI nr
Match: XP_022925483.1 (60S ribosomal protein L30 [Cucurbita moschata] >XP_022968625.1 60S ribosomal protein L30 [Cucurbita maxima] >XP_023529418.1 60S ribosomal protein L30 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 228.0 bits (580), Expect = 1.6e-56 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. NCBI nr
Match: XP_022960585.1 (60S ribosomal protein L30-like [Cucurbita moschata] >XP_022988235.1 60S ribosomal protein L30-like [Cucurbita maxima] >XP_023515547.1 60S ribosomal protein L30-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 224.6 bits (571), Expect = 1.7e-55 Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. NCBI nr
Match: XP_006340286.1 (PREDICTED: 60S ribosomal protein L30 [Solanum tuberosum]) HSP 1 Score: 224.2 bits (570), Expect = 2.3e-55 Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. NCBI nr
Match: XP_022157366.1 (60S ribosomal protein L30 [Momordica charantia]) HSP 1 Score: 223.8 bits (569), Expect = 2.9e-55 Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. NCBI nr
Match: PKI73294.1 (hypothetical protein CRG98_006232 [Punica granatum]) HSP 1 Score: 223.4 bits (568), Expect = 3.9e-55 Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. TAIR10
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 202.6 bits (514), Expect = 1.3e-52 Identity = 96/111 (86.49%), Postives = 108/111 (97.30%), Query Frame = 0
BLAST of Carg18011-RA vs. TAIR10
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 201.1 bits (510), Expect = 3.7e-52 Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 0
BLAST of Carg18011-RA vs. TAIR10
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein) HSP 1 Score: 197.6 bits (501), Expect = 4.1e-51 Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 0
BLAST of Carg18011-RA vs. Swiss-Prot
Match: sp|O49884|RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus OX=3873 GN=RPL30 PE=3 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 4.8e-57 Identity = 106/111 (95.50%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. Swiss-Prot
Match: sp|Q9M5M6|RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula OX=3993 GN=RPL30 PE=3 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 1.7e-54 Identity = 103/111 (92.79%), Postives = 110/111 (99.10%), Query Frame = 0
BLAST of Carg18011-RA vs. Swiss-Prot
Match: sp|Q9C8F7|RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana OX=3702 GN=RPL30A PE=3 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 2.3e-51 Identity = 96/111 (86.49%), Postives = 108/111 (97.30%), Query Frame = 0
BLAST of Carg18011-RA vs. Swiss-Prot
Match: sp|Q8VZ19|RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana OX=3702 GN=RPL30B PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 6.7e-51 Identity = 95/111 (85.59%), Postives = 105/111 (94.59%), Query Frame = 0
BLAST of Carg18011-RA vs. Swiss-Prot
Match: sp|Q9LSA3|RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana OX=3702 GN=RPL30C PE=3 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 7.4e-50 Identity = 93/111 (83.78%), Postives = 106/111 (95.50%), Query Frame = 0
BLAST of Carg18011-RA vs. TrEMBL
Match: tr|A0A0V0GYL7|A0A0V0GYL7_SOLCH (Putative ovule protein OS=Solanum chacoense OX=4108 PE=3 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55 Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. TrEMBL
Match: tr|M1BM03|M1BM03_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102595051 PE=3 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55 Identity = 109/111 (98.20%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. TrEMBL
Match: tr|A7X6P5|A7X6P5_PEA (Ribosomal protein L30e OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55 Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. TrEMBL
Match: tr|A0A2I0KXV1|A0A2I0KXV1_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_006232 PE=3 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 2.5e-55 Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0
BLAST of Carg18011-RA vs. TrEMBL
Match: tr|A0A1U8ENE7|A0A1U8ENE7_CAPAN (60S ribosomal protein L30 OS=Capsicum annuum OX=4072 GN=LOC107848475 PE=3 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 3.3e-55 Identity = 108/111 (97.30%), Postives = 111/111 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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