Carg17969-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTAGCTGCTGAAAATTTTTCATTTTTGGAAATTCATAGAGTTTTTCAATTCACCTTCTTAAGGGATTAATTTCTACTCTCTGTTTTTCGATTTATTACAGACAATTCTCTCTATTTTCTCTTCGATCCTATTTGATTTTCCTGTTTTCTCCATTTCGACGTTGCTCCAATTCCCATCGGTAAGCAATTTTTCTTTTGGATTTCTATGGCTGTTTATCTGGTTTTTGATTTCTAGGGTATTCGCGCAATTCACTGTTTTAGGGCTTTAAATCTTCTTTTGGGTTTTGGGTTTGTGGGTGATCGATTGTTTTGGGATTTGGTTTGATTCTGCGATTGTTGGGGGAATTGGAGGCGATGATTGATGTGTTATCGATGAGAATTCCTGTTTTTCTTTTGGGTATTCTTTTTTTGCGTGGTAATCATGTGTCAGATTTTGTAACAGCTTTGAAACTGGATAAAGCATTTTGAAGATGATGATGAATAAAGGAACTGAAAATTTATGTTTCTTGATTCTTCCTAGGTCACTTTTGCATCGGATGGTTGAATAATTGAGAGTTTAGCTTACGAATTTTGATTTGCTGTTGATGGGAATTTAGTGCGTGGAAAATAGTTGTTATGTACTTAGTTACTACTTTTTTTTAAAGAAACCTAGACGCTATATGAAAGGGGATCAGTACTTAAGTGTAATTACCTGAGATTTGTTCTACTTTGTTATGTTAAATTTAATTTGTACCAAGTTTGTATGAACTGGTTCTATGTTTTGTTGGATCTTAGGAGGAGGTTAGGATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGTTTTACTTGTTGGTTCATTTGGTTCAACTGATTGTGAAAACGGGATCTACGTTAGTCTTATCGATTAGTTCAAGTTTTAACTTCGGATAGTTTCTAGTTTAGCTTTGTTTGATTTGCTTTTGTTGGTGGGACCAAATGCATTTGGAGCAAATCCTAGTTAGATTTCGATATGATATGGTTGATTGTATTTTGTTGACTGCATTTTTGTATTCTTTTTATGTCTTTTTGTTGCTACAACTTGGTGCCCTACATCATTAAATCAATTTTTGGAACATTAATCCCTAAATTTCAACTGAGTCACATATGGGAGAGTGTAGCCGTCCAGGAAAACTAAACTGAGTCACATATTGCATAAAACAAAAGGGATGTTGAACACAGTTTAGTCAAAAGGTACTGAAAAGATGTGATTTCACTGGACTGAATCATGAAAAGCATTTTTTCTTTATGTTTTTGTCCAAAGGTATTGGAAAGATGTAACAATACAGGATTGAATCATGAAGAACATCGTTTGAAATGTTCTTTTATGCCTCCTGCAGTTACTTTTTACTCCTTGCCCTTGTGAACTTGAAGGGACAAGAGGAATTTTTCCTAAAGAAAGAGATTGAATGAGTCTAGGAGCTCCCTAATTACCTGTGTTAGCTTTCAACTTCCTGTTGTGATGAGATTAGATTACAATTGAGAAGGAATAATACTTAAATTCTAACTGCGAATAGGAAAGGATGCTTTCTTCAATTATTGGTTATCAAAAAAATTTCACTCTGGTTATTAAGAACTCGAGGCTCTTTTGTTTTTCAAAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGGTACATCATTACTCCTTTAACCATTAAAGTACTGAACAGTCTTTTAGCTTTTCTGTTTTGTGCCTGACAATATTGAATCTTATCTTCTTTAGAGGTGTTATTATGAAATTGGAGGCTTGCTTTAGGACTCAAAACTTCACTCTGTCTGGATCATTTTTTGAAACTATTTTAAGAAGAAATAAATACGGCAAGAGAGTGGCCGTTGTGTGTGTTTTTTTCAAAACAACCACCAAATATGCCCTTATAACAATTACATCTTCTAATTTCAGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGTATGTTCCATTGCTGTCTAATCTTAGAAAACGCTTTATGTTCTAACAATTTTCGAGCTTTTAGTCCCAAAGTTAAAGATTCCATTAAAAAATTGGTCAAGTTATGTTTTATAATTACATGACTGAAGAACTTCCTGTGTCTTTTGTGGTACTATTGCAGGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGTATGTTATTAACTCAAATTTCGTACAAACGAGTGAGTGGTTTCACTGTTTTAGCTTCTTTTCCATTACTTGGCTGTGCTCATCTTCCATAGCTGTTGAAATTAAAATCCGAAGGACACAGAACAGGGCTTTTGACCCTCTTAAGAGATGGAACTTCAAATCCGAGAACAAAAGTGTGAGATCCCACATTGATGGGAGAGGGGAAGGAAACATTCCTTATAAGGGAGTAGAGACCTCTTCTTAGTAGACGCATTTTAAAATCTTAAGGGAAATCCCGAAAGGGCAAGCCCAAAAAGAACAATATTTGCTAGCGATGGGTTTGGCTATTACAAATTGTATCAGAGCCAGACATCGGACGGTGTACGAACGAGTACGCTAGGCCCCTGAGAGGAGTGGATTGTAAGATCCCACATTGGTTGGAGAGGAGAACGAAAAATTTCTTATAAGGGTGTGGAAACCTCTTCCTAGAAGACGCCTTGAGGGGGAATTTCGAAAGGGCAAACCTAAAGAGGACAATATCTGCTAGCAGTGGTCTTGGGCTGTTTCAAAAAGGATCATGCTCTACCTTCATGAAAAATTGTGTTTGTGCATTCAAACCTGCCAAACTCAATTGGTTTGTTGTCATACATCTGTTTAAATTTTGCTTTTACTTCTGGTTCTGGGGTCGTTTTCGTGGACAGTTCCTGAAATATTATGCTGACTGTTGAGTGGTTAATGCTGATGATTTGAATTAGGACCTGTATTTGTACATGTAATACTCTCCCATCGTGAATGGCTCGAAGAACAATGCTTCTCAGTTTACATTTTCTCAACAAATCTTGTTACTTACAGTGTAGTTTGTCTGCAGGGATTTTAACACTGTTCTTCAATCTTTTAAATTTTTAATGAAGGTTTTTTTTTTTGTATAACCCTAGAAGAAAATTGATTATATGTGATCATTTATTGTGTCCAGTATAGCTTCAGAATACACAGAGAGCTGACATTTTCATTGTACAAGACTTTAATGACAAAAATCTCATGCTTAGGTAGTAACTTCAAATATTTCTCATATACAGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCGTATCTTTTTGAGAATGATCAATCTTTTAAACAACTCATCAAATCAAGATTTATATGCCCTGAATAGACAATATTGATGGTTAGCACCTGGGATATAGATTTAGGTTGTACTGTAATGGACCATGTTCAATATCTTATAACACTGAACTGCCATGAAATAGTTCTGCTGTGGTTCTGTCTGCTATCTAAACTAGTTCAATCAATCTATTCAGAAGTTGTTAGTTAATAACTATAGATACAAAGGAGTTATTTATACCAAACGCTTATGGTTAAGCATGTTACAACCACTTAATTGTTATAGATACTCACTCGAACTCGAACTCAGCTTAGAATATACACAAGAGTTCAATTTTTGGCTATGCTGCTCACTTTTCTTATTCAACAGCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG CTTAGCTGCTGAAAATTTTTCATTTTTGGAAATTCATAGAGTTTTTCAATTCACCTTCTTAAGGGATTAATTTCTACTCTCTGTTTTTCGATTTATTACAGACAATTCTCTCTATTTTCTCTTCGATCCTATTTGATTTTCCTGTTTTCTCCATTTCGACGTTGCTCCAATTCCCATCGGAGGAGGTTAGGATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG ATGTTGGAAACGAACTGTTTGGGTATGCAACTTTCAGGGTTTGAAGGCATGCAGTCGAAATCCGAAACCAATAATCAGTTTGAATCTGATCCAAACGGTACTCCATCCACGAGTATCTATTACGAACCCTGGTGGCGTGGTATTGGATACAACCCTATTCCGCTACCTATGGTAGGGGGAAATGCTTCCAGTTCAACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCGAACGATGGCCAGTCGGTGTCTAATAATGACGTCAATGATGAAGAAGATGTTTCCAAAGAAGTTCAAGCTACTGGATCTCCACATTCTGCTGGAAATTACAGACAGGCTGCTCAGAAGATGCAGCATGTTTCATCTACTTTTCCAGTAATGCATGGTGAATGTCTGATGCAGTCGACACAACTCGAACTTGTAGGCCACTCTATTGCATGTGCGTCAAACCCATATCAGGATCCATCTTATGGAGGAATGATGGCTTTTTATGGCCATCAGCCTTTGGGCTATCCTATGGTCGGAATGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTATTGGTGAATGCGAAGCAGTACCAAGGAATTTTGAGGAGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAGAAGAAGTCGATAAAAGCCAGAAAGGTGGATTTCCCATATCTTCATGAGTCTAGACACCAGCATGCCATAAGAAGGACAAGGGGTAGCGGAGGGCGTTTCACCAAGAAAAACGAAGCTGATGGAAAGGAGATGCATTCTGATGAAGTAAATGAGAATGGTCGCCATCTAAATGACGGTTCTAAACAGCAGAATGGAAGCTCCTTGACGAACATGGCCTCTGAGTAG MLETNCLGMQLSGFEGMQSKSETNNQFESDPNGTPSTSIYYEPWWRGIGYNPIPLPMVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDVSKEVQATGSPHSAGNYRQAAQKMQHVSSTFPVMHGECLMQSTQLELVGHSIACASNPYQDPSYGGMMAFYGHQPLGYPMVGMPHARMPLPIEIAQDPVLVNAKQYQGILRRRQARAKAEAEKKSIKARKVDFPYLHESRHQHAIRRTRGSGGRFTKKNEADGKEMHSDEVNENGRHLNDGSKQQNGSSLTNMASE
BLAST of Carg17969-RA vs. NCBI nr
Match: XP_022968054.1 (nuclear transcription factor Y subunit A-1 isoform X1 [Cucurbita maxima]) HSP 1 Score: 522.7 bits (1345), Expect = 7.9e-145 Identity = 267/273 (97.80%), Postives = 269/273 (98.53%), Query Frame = 0
BLAST of Carg17969-RA vs. NCBI nr
Match: XP_022926860.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 521.9 bits (1343), Expect = 1.4e-144 Identity = 269/274 (98.18%), Postives = 270/274 (98.54%), Query Frame = 0
BLAST of Carg17969-RA vs. NCBI nr
Match: XP_023530428.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 520.4 bits (1339), Expect = 3.9e-144 Identity = 267/273 (97.80%), Postives = 268/273 (98.17%), Query Frame = 0
BLAST of Carg17969-RA vs. NCBI nr
Match: XP_022968063.1 (nuclear transcription factor Y subunit A-1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 506.5 bits (1303), Expect = 5.9e-140 Identity = 262/273 (95.97%), Postives = 264/273 (96.70%), Query Frame = 0
BLAST of Carg17969-RA vs. NCBI nr
Match: XP_022926867.1 (nuclear transcription factor Y subunit A-1-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 505.8 bits (1301), Expect = 1.0e-139 Identity = 264/274 (96.35%), Postives = 265/274 (96.72%), Query Frame = 0
BLAST of Carg17969-RA vs. TAIR10
Match: AT5G12840.1 (nuclear factor Y, subunit A1) HSP 1 Score: 189.1 bits (479), Expect = 3.8e-48 Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 0
BLAST of Carg17969-RA vs. TAIR10
Match: AT3G20910.1 (nuclear factor Y, subunit A9) HSP 1 Score: 188.0 bits (476), Expect = 8.4e-48 Identity = 132/272 (48.53%), Postives = 161/272 (59.19%), Query Frame = 0
BLAST of Carg17969-RA vs. TAIR10
Match: AT2G34720.1 (nuclear factor Y, subunit A4) HSP 1 Score: 101.7 bits (252), Expect = 7.9e-22 Identity = 72/167 (43.11%), Postives = 90/167 (53.89%), Query Frame = 0
BLAST of Carg17969-RA vs. TAIR10
Match: AT1G30500.2 (nuclear factor Y, subunit A7) HSP 1 Score: 95.5 bits (236), Expect = 5.7e-20 Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 0
BLAST of Carg17969-RA vs. TAIR10
Match: AT1G72830.2 (nuclear factor Y, subunit A3) HSP 1 Score: 95.1 bits (235), Expect = 7.4e-20 Identity = 85/225 (37.78%), Postives = 113/225 (50.22%), Query Frame = 0
BLAST of Carg17969-RA vs. Swiss-Prot
Match: sp|Q9LXV5|NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 6.8e-47 Identity = 124/266 (46.62%), Postives = 161/266 (60.53%), Query Frame = 0
BLAST of Carg17969-RA vs. Swiss-Prot
Match: sp|Q945M9|NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 1.5e-46 Identity = 132/272 (48.53%), Postives = 161/272 (59.19%), Query Frame = 0
BLAST of Carg17969-RA vs. Swiss-Prot
Match: sp|Q8VY64|NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NFYA4 PE=1 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.4e-20 Identity = 72/167 (43.11%), Postives = 90/167 (53.89%), Query Frame = 0
BLAST of Carg17969-RA vs. Swiss-Prot
Match: sp|Q84JP1|NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.0e-18 Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 0
BLAST of Carg17969-RA vs. Swiss-Prot
Match: sp|Q93ZH2|NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana OX=3702 GN=NFYA3 PE=2 SV=2) HSP 1 Score: 93.2 bits (230), Expect = 5.1e-18 Identity = 84/225 (37.33%), Postives = 112/225 (49.78%), Query Frame = 0
BLAST of Carg17969-RA vs. TrEMBL
Match: tr|A0A1S3BP85|A0A1S3BP85_CUCME (nuclear transcription factor Y subunit A-1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492032 PE=4 SV=1) HSP 1 Score: 458.0 bits (1177), Expect = 1.6e-125 Identity = 244/287 (85.02%), Postives = 254/287 (88.50%), Query Frame = 0
BLAST of Carg17969-RA vs. TrEMBL
Match: tr|A0A0A0M2S3|A0A0A0M2S3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613580 PE=4 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 3.0e-124 Identity = 239/274 (87.23%), Postives = 249/274 (90.88%), Query Frame = 0
BLAST of Carg17969-RA vs. TrEMBL
Match: tr|A0A1S3BPV3|A0A1S3BPV3_CUCME (nuclear transcription factor Y subunit A-1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492032 PE=4 SV=1) HSP 1 Score: 453.4 bits (1165), Expect = 3.9e-124 Identity = 238/274 (86.86%), Postives = 248/274 (90.51%), Query Frame = 0
BLAST of Carg17969-RA vs. TrEMBL
Match: tr|A0A061GTI4|A0A061GTI4_THECC (Nuclear transcription factor Y subunit A-9, putative OS=Theobroma cacao OX=3641 GN=TCM_040712 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81 Identity = 165/240 (68.75%), Postives = 188/240 (78.33%), Query Frame = 0
BLAST of Carg17969-RA vs. TrEMBL
Match: tr|K7MQE5|K7MQE5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100808378 PE=4 SV=1) HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80 Identity = 163/254 (64.17%), Postives = 195/254 (76.77%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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