Carg17896-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17896-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_114 : 146168 .. 149212 (-)
Sequence length	1269

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAATTGTTTCATGGGATGGAGAGTGGAAAATGAGAAATAAGTCTATGTTTACTTGAAACCTGAATAATTTCCTCGAAACGACGTCGTATTATGTGTGGTGGGTGAGTACCTACCTAGAAAAGCATTAAGCCCATCTCCTGGCTCTCCTCTCACCCTTTCTCCAGTCGCCCAGATTGCACATCATCTCTTTCTGGCTTTTGGCCTCTATCTCCCATGGTGTTCATGAAACCTTAATTTAGGGTTTCTTTATTGTTCCTGTGCGCGTTCTCTATCTCTGAAGAAGAAGAAGAATAAGAAGAAGAATAAGAAGAAGAATGGCTTCCGTTTCGCTAACTAACCTTGATTTGGCGACACCTTTCCTGGGTCTAAACCTGTAATTCCCTCTCTCTCGTTTTCTCAAACTTCGGAATTTATTGAGTTTTGGTTTTAGCTTATGTGTGTGGTGTGCTTCTGCTCTTTTCCAGGTCTAGTCGCCTTACCGGGGTGAAGGGAAGACCATTTCGCGCGTTGTTTAGAAGCCCCAGATTTGTTTTGGATACACCATATGAAGGTACCTTTCTATTGTCTTCTTGCATTTTCATTCTTGAAACAATTTGCAATTGTGCATACTTAGTATACATGGGGTGGGTTTCCATCGATTAATTCCAGCGGCTGCAGCAGGAGGTTGAATTACCCTATGAATTATGAGACTAATGGTAATTTCATATTGATTGATTCTTTCTGCTCCAATCGGCTTTTCTGTGGATATTTTTAAAATGGTTTGATTGGAAGAACGTGGAGTTATCCTTACCTCGAGAAACTTATGTTCTAAAGAACATTATCTGCTTTATTTCTGAAATTCTTTCCTCTTTGGTTTTAAGTATTCATAAGAAATTTTGATATAGCTAGTGGATTATATAACGTGGACAATATTAAATTTGATAGTTACGTGAGACTCGGCCTCCTGGTTGTTTCTTCGCAGTATGCTTGACTTAAAAGTTTATTAGATTTGTTTGTCTTAAAAATATCCCTACTTTTTCCTAGCTGCTATGGTGATAAATCTGTCAATCCTTAATTATTCGCAGGTAATGTCACAAAGTTCTCTCGAATTCGTGTTTGGGATCCATATAAACGCCTTGGTGTAAGTACTGCTGCTTCAGAGGAAGAAATTTGGAGTGCACGGAATTTTCTTTTGCAGCAGTATTCCGGTCATGAAAGAAGTGAGGAATCTATAGAAGCTGCTTTTGAGAAAATATTGATGGCAAGCTTCCAGCATAGGAAAAAGACAAAGATTAATTTGAAAACCAGGTTGAAGAAGCAAGTCGAGGAGTCCCCACCATGGTTTAAGAACTTGCTGAATTTTGTAGAACTTCCTCCAACTGATGTTATCTTCAGAAGATTGTTTCTTTTTGCATTTATGGGTGGCTGGAGCATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTTAGTATAATATTCCTTCAGTAAACGCATTTTTTCCCTTTATAATGTCATCTCAATATATGAATAAACATATTTTTAGTGATGTCCCGAAGGCTAGTGCTTCTGTTGGGAAGTAATCAAAAGGGTGTAAATCGGAGCTGCACGTTTTGAATGTATTAGTTAGAGTGGTAAGGGAAGAAGAGTACCTAGGAACGTGCCACAAAATGCATACTTATCCCTTGTCGCATACTCAATTTCTGATCCAAATATTTAGAATAAGTAAAAATAATGGCAATAAGGAAAAAAATAGGAAAAGCAGTGAGTTCACGGTTATAAGCCATCTACCATCCACTGTAATGCCGTAGCCTCTTCTCTTCTTTAATTTTCGTTTTTGTGGCAGTGACTGTGTGAGATCCCATATCGGTTGGAGAGGGGAACATAGTATTCCTTATATGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACAGTGAGACTGACGGCGATACGTAGTGGATTAAAACGGACATATCTGCTAGCAATGGGCTTGGGCGGTTACAAACCTTGATTTAGTGATTGAATATTCAAATTATAAATCTTGATCCAGGAAAAATAAATTATTGTGTTAGCTCTGCGTCTTGCAAGCTTTAGTAATAAAGTGCCACTTTGAGATTAAGAATAGATGGGTGCACATAAGCTTTGAAGAATCCACGGATTTAAGATAAAAGGTTGCGCTCGAGGGTTCTTATCTTGCCAATCAATTAATTATTTTGACAGAATCCAACATCTGCTTTATCTATATTCCATCATATTAATTATTAAATTAGTTACTTGGTAGGAGTTCGTGCATCATAGCTTCGGTTCTCTTCCTCTAGTTGAGCATTTTTCGATTATCCCACGTTATTTTTCTTCCTCTTATTCTTATTCATCTGTATGGTATGATATCAAGATATCTAAAATTGCACTCGGGATTGGTTATACATCTTTGGGTCTATTCCATTTAAAAGCACATTCTGTCTTTGCATCTAATTTGGATCCTGTTGGGGGTGTTTTAGGCCACTGTCATCTCTGGTTAAACTTTGTATATCGATCAATGCAGGTTGCAGTGTCCTTGGCGGCCTGCATATATTTTCTCAATGAGAAGACTAAAAGTGTGGCTCGGGCTTCTATTATTGGGTAAAACTTGCACGAACTACTGATCTCATTATATATCTCAAAACTAAAACTCAGTGACTTATATGCCGTCTTTACTGTTCTGCCTGCAGACTTGGTTCTCTTGTGGCTGGTTGGGTATGCGGTTCGTTGATTGTTCCGAGTATTCCTTCGTTTCTATTGCAACCGACGTGGTCGCTCGAACTACTTACATCTCTAGTAGTATACGTCTTCTTGTTTCTGTCCTGTACTTTTCTCAAGTAGATCTCTCTGTTTGTGCTTCTAGCTTATTATCAAGTAGTAACATGGAAAATGGATTTAATGGGGGAATTTGCAGATATTATTGATCAGAGCTATCTGTGATCTTCCCTTCTTTAATTTTCATTATGACTTGAACTTTTATCACCATTCTACTCTTGCACATCTCAAGAAATAAGCCATCGTTGGGTGCGTTTAGCTTC

mRNA sequence

TTTAATTGTTTCATGGGATGGAGAGTGGAAAATGAGAAATAAGTCTATGTTTACTTGAAACCTGAATAATTTCCTCGAAACGACGTCGTATTATGTGTGGTGGGTGAGTACCTACCTAGAAAAGCATTAAGCCCATCTCCTGGCTCTCCTCTCACCCTTTCTCCAGTCGCCCAGATTGCACATCATCTCTTTCTGGCTTTTGGCCTCTATCTCCCATGGTGTTCATGAAACCTTAATTTAGGGTTTCTTTATTGTTCCTGTGCGCGTTCTCTATCTCTGAAGAAGAAGAAGAATAAGAAGAAGAATAAGAAGAAGAATGGCTTCCGTTTCGCTAACTAACCTTGATTTGGCGACACCTTTCCTGGGTCTAAACCTGTCTAGTCGCCTTACCGGGGTGAAGGGAAGACCATTTCGCGCGTTGTTTAGAAGCCCCAGATTTGTTTTGGATACACCATATGAAGGTAATGTCACAAAGTTCTCTCGAATTCGTGTTTGGGATCCATATAAACGCCTTGGTGTAAGTACTGCTGCTTCAGAGGAAGAAATTTGGAGTGCACGGAATTTTCTTTTGCAGCAGTATTCCGGTCATGAAAGAAGTGAGGAATCTATAGAAGCTGCTTTTGAGAAAATATTGATGGCAAGCTTCCAGCATAGGAAAAAGACAAAGATTAATTTGAAAACCAGGTTGAAGAAGCAAGTCGAGGAGTCCCCACCATGGTTTAAGAACTTGCTGAATTTTGTAGAACTTCCTCCAACTGATGTTATCTTCAGAAGATTGTTTCTTTTTGCATTTATGGGTGGCTGGAGCATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTTGCAGTGTCCTTGGCGGCCTGCATATATTTTCTCAATGAGAAGACTAAAAGTGTGGCTCGGGCTTCTATTATTGGACTTGGTTCTCTTGTGGCTGGTTGGGTATGCGGTTCGTTGATTGTTCCGAGTATTCCTTCGTTTCTATTGCAACCGACGTGGTCGCTCGAACTACTTACATCTCTAGTAGTATACGTCTTCTTGTTTCTGTCCTGTACTTTTCTCAAGTAGATCTCTCTGTTTGTGCTTCTAGCTTATTATCAAGTAGTAACATGGAAAATGGATTTAATGGGGGAATTTGCAGATATTATTGATCAGAGCTATCTGTGATCTTCCCTTCTTTAATTTTCATTATGACTTGAACTTTTATCACCATTCTACTCTTGCACATCTCAAGAAATAAGCCATCGTTGGGTGCGTTTAGCTTC

Coding sequence (CDS)

ATGGCTTCCGTTTCGCTAACTAACCTTGATTTGGCGACACCTTTCCTGGGTCTAAACCTGTCTAGTCGCCTTACCGGGGTGAAGGGAAGACCATTTCGCGCGTTGTTTAGAAGCCCCAGATTTGTTTTGGATACACCATATGAAGGTAATGTCACAAAGTTCTCTCGAATTCGTGTTTGGGATCCATATAAACGCCTTGGTGTAAGTACTGCTGCTTCAGAGGAAGAAATTTGGAGTGCACGGAATTTTCTTTTGCAGCAGTATTCCGGTCATGAAAGAAGTGAGGAATCTATAGAAGCTGCTTTTGAGAAAATATTGATGGCAAGCTTCCAGCATAGGAAAAAGACAAAGATTAATTTGAAAACCAGGTTGAAGAAGCAAGTCGAGGAGTCCCCACCATGGTTTAAGAACTTGCTGAATTTTGTAGAACTTCCTCCAACTGATGTTATCTTCAGAAGATTGTTTCTTTTTGCATTTATGGGTGGCTGGAGCATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTTGCAGTGTCCTTGGCGGCCTGCATATATTTTCTCAATGAGAAGACTAAAAGTGTGGCTCGGGCTTCTATTATTGGACTTGGTTCTCTTGTGGCTGGTTGGGTATGCGGTTCGTTGATTGTTCCGAGTATTCCTTCGTTTCTATTGCAACCGACGTGGTCGCTCGAACTACTTACATCTCTAGTAGTATACGTCTTCTTGTTTCTGTCCTGTACTTTTCTCAAGTAG

Protein sequence

MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVWDPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVYVFLFLSCTFLK

Homology

[Close]

BLAST of Carg17896-RA vs. NCBI nr
Match: XP_023516827.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 488.0 bits (1255), Expect = 1.9e-134
Identity = 250/251 (99.60%), Postives = 250/251 (99.60%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPR VLDTPYEGNVTKFSRIRVW
Sbjct: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRCVLDTPYEGNVTKFSRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
           VFLFLSCTFLK
Sbjct: 241 VFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. NCBI nr
Match: XP_022988476.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 485.0 bits (1247), Expect = 1.6e-133
Identity = 248/251 (98.80%), Postives = 249/251 (99.20%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MASVSLTNLDLATPFLGLNLSSRL GVKGRPFRALFRSPR VLDTPYEGNVTKFSRIRVW
Sbjct: 1   MASVSLTNLDLATPFLGLNLSSRLNGVKGRPFRALFRSPRCVLDTPYEGNVTKFSRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTK+VARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKTVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
           VFLFLSCTFLK
Sbjct: 241 VFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. NCBI nr
Match: XP_022921371.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 484.2 bits (1245), Expect = 2.7e-133
Identity = 248/251 (98.80%), Postives = 249/251 (99.20%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MASVSLTNLDLATPFLGLNLSSRL GVKGRPFRALFRSPR VLDTPYEGNVTKFSRIRVW
Sbjct: 1   MASVSLTNLDLATPFLGLNLSSRLIGVKGRPFRALFRSPRCVLDTPYEGNVTKFSRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFE+ILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEEILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
           VFLFLSCTFLK
Sbjct: 241 VFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. NCBI nr
Match: XP_022931604.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 465.7 bits (1197), Expect = 1.0e-127
Identity = 236/251 (94.02%), Postives = 242/251 (96.41%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MAS SLTNLDLATPFLG NLS RL   KG+PF ALFRSP+ VLDTPYEGNVTKF RIRVW
Sbjct: 1   MASFSLTNLDLATPFLGQNLSGRLNRAKGKPFCALFRSPKCVLDTPYEGNVTKFPRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLG+STAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGISTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRR+FLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRMFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKS+ARASIIGLGSLVAGWVCGSL+VPSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKSLARASIIGLGSLVAGWVCGSLVVPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
           VFLFLSCTFLK
Sbjct: 241 VFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. NCBI nr
Match: XP_023007253.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 463.4 bits (1191), Expect = 5.0e-127
Identity = 236/251 (94.02%), Postives = 241/251 (96.02%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MAS SLTNLDLAT FLG NLS RL   KG+PF ALFRSP+ VLDTPYEGNVTKF RIRVW
Sbjct: 1   MASFSLTNLDLATSFLGQNLSGRLNRAKGKPFCALFRSPKCVLDTPYEGNVTKFPRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKS+ARASIIGLGSLVAGWVCGSL+VPSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKSLARASIIGLGSLVAGWVCGSLVVPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
           +FLFLSCTFLK
Sbjct: 241 IFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. TAIR10
Match: AT5G23040.1 (Protein of unknown function (DUF3353))

HSP 1 Score: 348.6 bits (893), Expect = 3.2e-96
Identity = 172/224 (76.79%), Postives = 197/224 (87.95%), Query Frame = 0


Query: 31  PFRAL---FRSPRFVLDTPYEGNVTKFSRIRVWDPYKRLGVSTAASEEEIWSARNFLLQQ 90
           PFR +   F++ +  +D+ Y GNV  F R RVWDPYKRLGVS  ASEEEIW++RNFLLQQ
Sbjct: 35  PFRNVSRSFKTVKCTVDSSYGGNVPTFPRTRVWDPYKRLGVSPYASEEEIWASRNFLLQQ 94

Query: 91  YSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPWFKNLLNFVELPPT 150
           Y+GHERSEESIE AFEK+LM+SF  RKKTKINLK++LKK+VEESPPW K LL+FVE+PP 
Sbjct: 95  YAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPM 154

Query: 151 DVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIGLGSLV 210
           D IFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAAC+YFLNEKTKS+ RA +IG+G+LV
Sbjct: 155 DTIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALV 214

Query: 211 AGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVYVFLFLSCTFLK 252
           AGW CGSLI+P IP+FL+QPTW+LELLTSLV YVFLFLSCTFLK
Sbjct: 215 AGWFCGSLIIPMIPTFLIQPTWTLELLTSLVAYVFLFLSCTFLK 258

[Close]

BLAST of Carg17896-RA vs. TAIR10
Match: AT3G51140.1 (Protein of unknown function (DUF3353))

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-31
Identity = 89/251 (35.46%), Postives = 142/251 (56.57%), Query Frame = 0


Query: 6   LTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVWDPYKR 65
           L N + A P L    SSRL     R    + R+         + +   F RI V DPYKR
Sbjct: 38  LNNRNSAWPVL---KSSRLALPTQRRNAMITRAMSASFGDMADDSAAIFPRINVKDPYKR 97

Query: 66  LGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLK 125
           LG+S  ASE+EI  ARNFL+QQY+GH+ S ++IE+A +KI+M  F  RK  KI++  ++ 
Sbjct: 98  LGISRMASEDEIQGARNFLIQQYAGHKPSVDAIESAHDKIIMQKFHERKNPKIDISKKV- 157

Query: 126 KQVEESPPWFKNLLNFV----ELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSL 185
           +QV +S      ++NFV    + PP  V+ +    FA +G  +++   E GP  QV +SL
Sbjct: 158 RQVRQS-----KVVNFVFERFQTPPNAVLVKTAVTFAVLGVLTVLFPTEEGPTLQVLLSL 217

Query: 186 AACIYFLNEKTKSVARASIIGLGSLVAGWVCGS-LIVPSIPSFLLQPTWSLELLTSLVVY 245
            A  YF++++ +      + G G+ +  W+ G+ L+V  IP F+  P    E+++SL+ Y
Sbjct: 218 IATFYFIHQRLQKKLWTFLYGAGAFIFSWLVGTFLMVSVIPPFIKGPR-GFEVMSSLLSY 277

Query: 246 VFLFLSCTFLK 252
           V L+++ ++L+
Sbjct: 278 VLLWVASSYLR 278

[Close]

BLAST of Carg17896-RA vs. TAIR10
Match: AT2G20920.1 (Protein of unknown function (DUF3353))

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-08
Identity = 48/172 (27.91%), Postives = 75/172 (43.60%), Query Frame = 0


Query: 64  KRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTR 123
           K LGVS  AS +EI  A+  +L        +    EAA++ +LM S   R+  K+     
Sbjct: 79  KVLGVSEGASFDEILRAKKSILASRKDDPNAISQAEAAYDMLLMQSLNQRRAGKVVSNNI 138

Query: 124 LKKQVEESPP--------WFKNLLNFVELPPTD------VIFRRLFLFAFMGGWSIMNS- 183
               V+ S P        W KN    V++P T        ++  + +  ++ G S  +S 
Sbjct: 139 RYADVKSSNPLGTSTVTQWMKNPPVSVDMPSTSDLGIQAGVYGAMMVLTYVNGSSFESSG 198

Query: 184 ----AEGGPAFQVAVSLAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLI 217
                   P   +A S  A +YF+ +K   + +A+ +  G LVAG V GS I
Sbjct: 199 MPYAGADVPGLILASSFGASLYFMTKKKVKLGKAAALTAGGLVAGAVVGSAI 250

[Close]

BLAST of Carg17896-RA vs. Swiss-Prot
Match: sp|Q9FN50|CPP1_ARATH (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPP1 PE=1 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.8e-95
Identity = 172/224 (76.79%), Postives = 197/224 (87.95%), Query Frame = 0


Query: 31  PFRAL---FRSPRFVLDTPYEGNVTKFSRIRVWDPYKRLGVSTAASEEEIWSARNFLLQQ 90
           PFR +   F++ +  +D+ Y GNV  F R RVWDPYKRLGVS  ASEEEIW++RNFLLQQ
Sbjct: 35  PFRNVSRSFKTVKCTVDSSYGGNVPTFPRTRVWDPYKRLGVSPYASEEEIWASRNFLLQQ 94

Query: 91  YSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPWFKNLLNFVELPPT 150
           Y+GHERSEESIE AFEK+LM+SF  RKKTKINLK++LKK+VEESPPW K LL+FVE+PP 
Sbjct: 95  YAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKKKVEESPPWLKALLDFVEMPPM 154

Query: 151 DVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIGLGSLV 210
           D IFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAAC+YFLNEKTKS+ RA +IG+G+LV
Sbjct: 155 DTIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACVYFLNEKTKSLGRACLIGIGALV 214

Query: 211 AGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVYVFLFLSCTFLK 252
           AGW CGSLI+P IP+FL+QPTW+LELLTSLV YVFLFLSCTFLK
Sbjct: 215 AGWFCGSLIIPMIPTFLIQPTWTLELLTSLVAYVFLFLSCTFLK 258

[Close]

BLAST of Carg17896-RA vs. Swiss-Prot
Match: sp|G5DBJ0|CPP1_NICBE (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CPP1 PE=1 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.8e-91
Identity = 169/252 (67.06%), Postives = 197/252 (78.17%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPR-FVLDTPYEGNVTKFSRIRV 60
           MA+  ++ L L++ FLG   SSR   ++  P     R PR    DTPY GN+ +F R+ V
Sbjct: 1   MATTLISKLTLSSAFLGQQFSSRGNSMRSAPAGLFLRGPRCAATDTPYGGNIPQFPRVNV 60

Query: 61  WDPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKIN 120
           WDPYKRLG+S  ASEEE+WS+RNFLL QY  HERS ESIEAAFEKILMASF +RKKTKIN
Sbjct: 61  WDPYKRLGISRDASEEEVWSSRNFLLNQYYNHERSAESIEAAFEKILMASFINRKKTKIN 120

Query: 121 LKTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAV 180
           LKTRLKK+VEESPPW +NLL+FVELPP  +I RRLFLF FM  WS+MNS E GPAFQVA+
Sbjct: 121 LKTRLKKKVEESPPWVQNLLSFVELPPPVIILRRLFLFGFMACWSVMNSTEAGPAFQVAI 180

Query: 181 SLAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVV 240
           S  AC+YFLN+KTKS+ RA++IG G+LVAGW CGSL+VP IP  LL PTWSLELLTSL +
Sbjct: 181 SFGACVYFLNDKTKSLGRAALIGFGALVAGWFCGSLLVPMIPPNLLHPTWSLELLTSLFI 240

Query: 241 YVFLFLSCTFLK 252
           YV LFL CTFLK
Sbjct: 241 YVSLFLGCTFLK 252

[Close]

BLAST of Carg17896-RA vs. TrEMBL
Match: tr|A0A1S3BVF6|A0A1S3BVF6_CUCME (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494090 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 2.9e-123
Identity = 228/251 (90.84%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           MASVS+T LDLATPFL  NL  RL  + G+PFRALFRSP+ VLDTPYEGNVTKF RIRVW
Sbjct: 1   MASVSITKLDLATPFLAQNLPGRLNRLNGKPFRALFRSPKCVLDTPYEGNVTKFPRIRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLGVS+AASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGVSSAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQV+ESPPW KNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS
Sbjct: 121 KTRLKKQVDESPPWIKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKS+ARASIIG GSLV GWVCGSL+ PSIPSFLLQPTWSLELLTSLVVY
Sbjct: 181 LAACIYFLNEKTKSLARASIIGFGSLVVGWVCGSLVGPSIPSFLLQPTWSLELLTSLVVY 240

Query: 241 VFLFLSCTFLK 252
            FLFLSCTFLK
Sbjct: 241 FFLFLSCTFLK 251

[Close]

BLAST of Carg17896-RA vs. TrEMBL
Match: tr|A0A0A0LUP3|A0A0A0LUP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014380 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 1.7e-115
Identity = 213/229 (93.01%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 23  RLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVWDPYKRLGVSTAASEEEIWSARN 82
           RL  + G+PFRALFRSPR VLDTPYEGNVTKF R+RVWDPYKRLGVS+ ASEEEIW ARN
Sbjct: 5   RLNRLNGKPFRALFRSPRCVLDTPYEGNVTKFPRVRVWDPYKRLGVSSDASEEEIWGARN 64

Query: 83  FLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPWFKNLLNFV 142
           FLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPW KNLLNFV
Sbjct: 65  FLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINLKTRLKKQVEESPPWIKNLLNFV 124

Query: 143 ELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIG 202
           ELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIG
Sbjct: 125 ELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSVARASIIG 184

Query: 203 LGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVYVFLFLSCTFLK 252
            GSLV GWVCGSL+VPSIPSFLLQPTWSLELLTSLVVY FLFLSCTFLK
Sbjct: 185 FGSLVVGWVCGSLVVPSIPSFLLQPTWSLELLTSLVVYFFLFLSCTFLK 233

[Close]

BLAST of Carg17896-RA vs. TrEMBL
Match: tr|A0A2I4DGM9|A0A2I4DGM9_9ROSI (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Juglans regia OX=51240 GN=LOC108979952 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 3.6e-102
Identity = 194/252 (76.98%), Postives = 216/252 (85.71%), Query Frame = 0


Query: 1   MASVSLTN-LDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRV 60
           MAS+ L+    L+T FL             + + A F+ PR  +DTP+EGNV KFSR+RV
Sbjct: 39  MASLLLSKPSSLSTSFLPTKTFFHGNAKNRKTYCANFKGPRCAVDTPHEGNVQKFSRLRV 98

Query: 61  WDPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKIN 120
           WDPYKRLGVS  ASEEEIW +RNFLL+QY+GHERSEESIEAAFEKILMAS+QHRKKTKIN
Sbjct: 99  WDPYKRLGVSRDASEEEIWGSRNFLLEQYAGHERSEESIEAAFEKILMASYQHRKKTKIN 158

Query: 121 LKTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAV 180
           LK+RLKK+VEESPPW KNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAV
Sbjct: 159 LKSRLKKKVEESPPWVKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAV 218

Query: 181 SLAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVV 240
           SLAACIYFLNEKTKS+ARA IIG G+LV GW+CGSL+VP+IPS +L PTW+LELLTSLVV
Sbjct: 219 SLAACIYFLNEKTKSLARAFIIGFGALVTGWICGSLLVPNIPSVILHPTWTLELLTSLVV 278

Query: 241 YVFLFLSCTFLK 252
           Y FLFLSCTFLK
Sbjct: 279 YFFLFLSCTFLK 290

[Close]

BLAST of Carg17896-RA vs. TrEMBL
Match: tr|W9ST27|W9ST27_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004310 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 4.5e-100
Identity = 191/251 (76.10%), Postives = 208/251 (82.87%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNLSSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRIRVW 60
           M S+ L+  + ATPFLG  LS      K      +   PR  +DTPY GNV KF R+RVW
Sbjct: 1   MVSLCLSKPNFATPFLGQKLSFHGNTTKD---CVVLGGPRCAVDTPYGGNVPKFPRLRVW 60

Query: 61  DPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTKINL 120
           DPYKRLG+S  ASEEEIW +RNFLLQQY+GHERSEESIEAAFEKILMASFQHRKKTKINL
Sbjct: 61  DPYKRLGISRDASEEEIWGSRNFLLQQYTGHERSEESIEAAFEKILMASFQHRKKTKINL 120

Query: 121 KTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVS 180
           KTRLKKQVEESPPW KNLL+FVELPP D+  RRLFLFAFMGGWSI+NSAE GPAFQVAVS
Sbjct: 121 KTRLKKQVEESPPWIKNLLSFVELPPVDITLRRLFLFAFMGGWSIINSAESGPAFQVAVS 180

Query: 181 LAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSLVVY 240
           LAACIYFLNEKTKS+ RA IIG G+LV GWVCGSL+VP+IPS LL PTW+LEL TSLVVY
Sbjct: 181 LAACIYFLNEKTKSLGRAFIIGFGALVTGWVCGSLLVPNIPSVLLHPTWTLELATSLVVY 240

Query: 241 VFLFLSCTFLK 252
           VFLFL CTFLK
Sbjct: 241 VFLFLGCTFLK 248

[Close]

BLAST of Carg17896-RA vs. TrEMBL
Match: tr|A0A1U8NM96|A0A1U8NM96_GOSHI (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Gossypium hirsutum OX=3635 GN=LOC107949750 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 2.2e-99
Identity = 187/254 (73.62%), Postives = 211/254 (83.07%), Query Frame = 0


Query: 1   MASVSLTNLDLATPFLGLNL---SSRLTGVKGRPFRALFRSPRFVLDTPYEGNVTKFSRI 60
           M+S SL+N  L+TPF+G NL    +   G+   P       PR  +D PY GN   F RI
Sbjct: 1   MSSSSLSNPTLSTPFIGHNLRLNQNTKDGINCFPSLRRHGVPRCAVDMPYGGNAPTFPRI 60

Query: 61  RVWDPYKRLGVSTAASEEEIWSARNFLLQQYSGHERSEESIEAAFEKILMASFQHRKKTK 120
           RVWDPYKRLG+S  ASEEEIWSARNFLL+QY+GHERSEESIEAAFEK+LMASFQHRKKTK
Sbjct: 61  RVWDPYKRLGISPYASEEEIWSARNFLLEQYAGHERSEESIEAAFEKLLMASFQHRKKTK 120

Query: 121 INLKTRLKKQVEESPPWFKNLLNFVELPPTDVIFRRLFLFAFMGGWSIMNSAEGGPAFQV 180
           INLK+RLKK+VEESPPW KNLLNFVELPP +VIFRRLFLFAFMGGWSIMNS+EGGPAFQV
Sbjct: 121 INLKSRLKKKVEESPPWIKNLLNFVELPPMEVIFRRLFLFAFMGGWSIMNSSEGGPAFQV 180

Query: 181 AVSLAACIYFLNEKTKSVARASIIGLGSLVAGWVCGSLIVPSIPSFLLQPTWSLELLTSL 240
           AVSLAACIYFLNEKTKS+ RA +IGLG+L  GW+CGS+ VP IP+ L+ PTW+LELLTSL
Sbjct: 181 AVSLAACIYFLNEKTKSLGRAFVIGLGALATGWICGSIFVPMIPTVLIHPTWTLELLTSL 240

Query: 241 VVYVFLFLSCTFLK 252
           V Y FLFL+CTFLK
Sbjct: 241 VAYAFLFLACTFLK 254

The following BLAST results are available for this feature:

BLAST of Carg17896-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516827.1	1.9e-134	99.60	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita pepo subsp...	[more]
XP_022988476.1	1.6e-133	98.80	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022921371.1	2.7e-133	98.80	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022931604.1	1.0e-127	94.02	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic [Cucurbita moschata]	[more]
XP_023007253.1	5.0e-127	94.02	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Carg17896-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G23040.1	3.2e-96	76.79	Protein of unknown function (DUF3353)	[more]
AT3G51140.1	3.6e-31	35.46	Protein of unknown function (DUF3353)	[more]
AT2G20920.1	2.5e-08	27.91	Protein of unknown function (DUF3353)	[more]

BLAST of Carg17896-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FN50\|CPP1_ARATH	5.8e-95	76.79	Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
sp\|G5DBJ0\|CPP1_NICBE	1.8e-91	67.06	Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana O...	[more]

BLAST of Carg17896-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVF6\|A0A1S3BVF6_CUCME	2.9e-123	90.84	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LUP3\|A0A0A0LUP3_CUCSA	1.7e-115	93.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014380 PE=4 SV=1	[more]
tr\|A0A2I4DGM9\|A0A2I4DGM9_9ROSI	3.6e-102	76.98	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Juglans regia OX=51240 ...	[more]
tr\|W9ST27\|W9ST27_9ROSA	4.5e-100	76.10	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004310 PE=4 SV=1	[more]
tr\|A0A1U8NM96\|A0A1U8NM96_GOSHI	2.2e-99	73.62	protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Gossypium hirsutum...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021788	CPP1-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17896	Carg17896	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17896-RA	Carg17896-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17896-RA.three_prime_UTR.1	Carg17896-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17896-RA.CDS.5	Carg17896-RA.CDS.5	CDS
Carg17896-RA.CDS.4	Carg17896-RA.CDS.4	CDS
Carg17896-RA.CDS.3	Carg17896-RA.CDS.3	CDS
Carg17896-RA.CDS.2	Carg17896-RA.CDS.2	CDS
Carg17896-RA.CDS.1	Carg17896-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17896-RA.five_prime_UTR.1	Carg17896-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17896-RA.exon.5	Carg17896-RA.exon.5	exon
Carg17896-RA.exon.4	Carg17896-RA.exon.4	exon
Carg17896-RA.exon.3	Carg17896-RA.exon.3	exon
Carg17896-RA.exon.2	Carg17896-RA.exon.2	exon
Carg17896-RA.exon.1	Carg17896-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021788	Protein CHAPERONE-LIKE PROTEIN OF POR1-like	PFAM	PF11833	CPP1-like	coord: 72..250 e-value: 1.5E-59 score: 200.9
IPR021788	Protein CHAPERONE-LIKE PROTEIN OF POR1-like	PANTHER	PTHR33372	FAMILY NOT NAMED	coord: 33..251
None	No IPR available	PANTHER	PTHR33372:SF3	PROTEIN CHAPERONE-LIKE PROTEIN OF POR1, CHLOROPLASTIC	coord: 33..251