Carg17691-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17691-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Arv1-like protein
Location	Cucurbita_argyrosperma_scaffold_119 : 864168 .. 864530 (+)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGGTATACTTTCGACAGTTCTAGTTATTTTCTTTTTGTTGTAGACATTGCTGTTTAATTAATCTAAAATGCATGGAATGAATACTCGTGTATCTTTCTGATATTCGTCGTGTTTTACTGCAGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

mRNA sequence

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

Coding sequence (CDS)

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

Protein sequence

MRPFARRTSHFVSNLFVSHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIKGKEDLICP

Homology

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BLAST of Carg17691-RA vs. NCBI nr
Match: XP_022924656.1 (protein arv1 homolog [Cucurbita moschata] >XP_022924657.1 protein arv1 homolog [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691-RA vs. NCBI nr
Match: XP_023527859.1 (protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo] >XP_023527860.1 protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691-RA vs. NCBI nr
Match: XP_022979276.1 (uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima] >XP_022979277.1 uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYK FFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 94  HILSRVFLRSSAGVHKYRYKHFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 153

Query: 70  VIAIK 73
           VIAIK
Sbjct: 154 VIAIK 158

[Close]

BLAST of Carg17691-RA vs. NCBI nr
Match: XP_022979274.1 (protein arv1 homolog isoform X1 [Cucurbita maxima] >XP_022979275.1 protein arv1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYK FFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKHFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691-RA vs. NCBI nr
Match: XP_011650613.1 (PREDICTED: protein arv1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 10  HFVSNLFVSHCL--CRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F++      R+RY++FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLSSN
Sbjct: 185 HILSRVFLTSSSGDHRHRYREFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLSSN 244

Query: 70  VIAIKG 74
           V+AIKG
Sbjct: 245 VVAIKG 250

[Close]

BLAST of Carg17691-RA vs. TAIR10
Match: AT4G01510.1 (Arv1-like protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           R K+    I+ISSY KIFL  M +WEFP  VIFI+D+ VL+SN +A+K
Sbjct: 146 RGKEILLTILISSYVKIFLFAMPVWEFPVSVIFIVDMLVLTSNAVALK 193

[Close]

BLAST of Carg17691-RA vs. TAIR10
Match: AT1G01020.1 (Arv1-like protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-08
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           R ++    I ISSYFKIFL+ M++WEFP  VIF +D+ +L+SN +A+K
Sbjct: 147 RRREIMLGIFISSYFKIFLLAMLVWEFPMSVIFFVDILLLTSNSMALK 194

[Close]

BLAST of Carg17691-RA vs. Swiss-Prot
Match: sp|Q54GD9|ARV1_DICDI (Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           +Y     AII+SS+ K FLV MMIW++P     I+++FVLSSNV+AIK
Sbjct: 158 KYNYLIMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIK 205

[Close]

BLAST of Carg17691-RA vs. TrEMBL
Match: tr|A0A1S4DSU3|A0A1S4DSU3_CUCME (protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 136 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 195

Query: 68  SNVIAIKG 74
           SNV+AIKG
Sbjct: 196 SNVVAIKG 203

[Close]

BLAST of Carg17691-RA vs. TrEMBL
Match: tr|A0A1S4DTN2|A0A1S4DTN2_CUCME (protein arv1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 106 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 165

Query: 68  SNVIAIKG 74
           SNV+AIKG
Sbjct: 166 SNVVAIKG 173

[Close]

BLAST of Carg17691-RA vs. TrEMBL
Match: tr|A0A0A0L5K8|A0A0A0L5K8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 10  HFVSNLFVSHCL--CRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F++      R+RY++FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLSSN
Sbjct: 185 HILSRVFLTSSSGDHRHRYREFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLSSN 244

Query: 70  VIAIK 73
           V+AIK
Sbjct: 245 VVAIK 249

[Close]

BLAST of Carg17691-RA vs. TrEMBL
Match: tr|A0A1S3AVD2|A0A1S3AVD2_CUCME (protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 136 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 195

Query: 68  SNVIAIK 73
           SNV+AIK
Sbjct: 196 SNVVAIK 202

[Close]

BLAST of Carg17691-RA vs. TrEMBL
Match: tr|A0A2T7C052|A0A2T7C052_9POAL (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G060200 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-11
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIKGKEDLICP 81
           RY++  FA+IISSYFK+FL  MM+WEFPS VIFI+++FVLSSNV+A++GK     P
Sbjct: 158 RYREVLFAVIISSYFKLFLFTMMVWEFPSSVIFIVEMFVLSSNVVALRGKHCTFSP 213

The following BLAST results are available for this feature:

BLAST of Carg17691-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924656.1	5.1e-17	81.54	protein arv1 homolog [Cucurbita moschata] >XP_022924657.1 protein arv1 homolog [...	[more]
XP_023527859.1	5.1e-17	81.54	protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo] >XP_023527860.1 pro...	[more]
XP_022979276.1	3.3e-16	80.00	uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima] >XP_022979277...	[more]
XP_022979274.1	3.3e-16	80.00	protein arv1 homolog isoform X1 [Cucurbita maxima] >XP_022979275.1 protein arv1 ...	[more]
XP_011650613.1	4.0e-14	71.21	PREDICTED: protein arv1 homolog isoform X1 [Cucumis sativus]	[more]

BLAST of Carg17691-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01510.1	6.8e-08	56.25	Arv1-like protein	[more]
AT1G01020.1	8.9e-08	52.08	Arv1-like protein	[more]

BLAST of Carg17691-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54GD9\|ARV1_DICDI	2.0e-04	54.17	Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1	[more]

BLAST of Carg17691-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSU3\|A0A1S4DSU3_CUCME	1.7e-13	67.65	protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A1S4DTN2\|A0A1S4DTN2_CUCME	1.7e-13	67.65	protein arv1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A0A0L5K8\|A0A0A0L5K8_CUCSA	1.7e-13	70.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=4 SV=1	[more]
tr\|A0A1S3AVD2\|A0A1S3AVD2_CUCME	1.1e-12	67.16	protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A2T7C052\|A0A2T7C052_9POAL	8.0e-11	62.50	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G06020...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007290	Arv1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17691	Carg17691	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17691-RA.exon.1	Carg17691-RA.exon.1	exon
Carg17691-RA.exon.2	Carg17691-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17691-RA.CDS.1	Carg17691-RA.CDS.1	CDS
Carg17691-RA.CDS.2	Carg17691-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17691-RA	Carg17691-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007290	Arv1 protein	PFAM	PF04161	Arv1	coord: 21..71 e-value: 8.4E-10 score: 39.1