Carg17691 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17691
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Arv1-like protein
Location	Cucurbita_argyrosperma_scaffold_119 : 864168 .. 864530 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGGTATACTTTCGACAGTTCTAGTTATTTTCTTTTTGTTGTAGACATTGCTGTTTAATTAATCTAAAATGCATGGAATGAATACTCGTGTATCTTTCTGATATTCGTCGTGTTTTACTGCAGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

mRNA sequence

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

Coding sequence (CDS)

ATGCGTCCATTTGCCCGTAGGACGTCTCATTTTGTTTCTAATTTGTTTGTTTCTCATTGCTTGTGCAGGTACAGGTACAAAGACTTTTTCTTTGCCATCATTATTTCAAGTTACTTCAAGATCTTTCTTGTTTGCATGATGATCTGGGAATTTCCATCTCCAGTGATCTTCATTATAGATTTATTTGTTTTATCATCCAATGTAATAGCAATTAAAGGCAAGGAAGACTTAATTTGTCCGTAG

Protein sequence

MRPFARRTSHFVSNLFVSHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIKGKEDLICP

Homology

[Close]

BLAST of Carg17691 vs. NCBI nr
Match: XP_022924656.1 (protein arv1 homolog [Cucurbita moschata] >XP_022924657.1 protein arv1 homolog [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691 vs. NCBI nr
Match: XP_023527859.1 (protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo] >XP_023527860.1 protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691 vs. NCBI nr
Match: XP_022979276.1 (uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima] >XP_022979277.1 uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYK FFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 94  HILSRVFLRSSAGVHKYRYKHFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 153

Query: 70  VIAIK 73
           VIAIK
Sbjct: 154 VIAIK 158

[Close]

BLAST of Carg17691 vs. NCBI nr
Match: XP_022979274.1 (protein arv1 homolog isoform X1 [Cucurbita maxima] >XP_022979275.1 protein arv1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 10  HFVSNLFV--SHCLCRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F+  S  + +YRYK FFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN
Sbjct: 138 HILSRVFLRSSAGVHKYRYKHFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 197

Query: 70  VIAIK 73
           VIAIK
Sbjct: 198 VIAIK 202

[Close]

BLAST of Carg17691 vs. NCBI nr
Match: XP_011650613.1 (PREDICTED: protein arv1 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 10  HFVSNLFVSHCL--CRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F++      R+RY++FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLSSN
Sbjct: 185 HILSRVFLTSSSGDHRHRYREFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLSSN 244

Query: 70  VIAIKG 74
           V+AIKG
Sbjct: 245 VVAIKG 250

[Close]

BLAST of Carg17691 vs. TAIR10
Match: AT4G01510.1 (Arv1-like protein)

HSP 1 Score: 53.5 bits (127), Expect = 6.8e-08
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           R K+    I+ISSY KIFL  M +WEFP  VIFI+D+ VL+SN +A+K
Sbjct: 146 RGKEILLTILISSYVKIFLFAMPVWEFPVSVIFIVDMLVLTSNAVALK 193

[Close]

BLAST of Carg17691 vs. TAIR10
Match: AT1G01020.1 (Arv1-like protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-08
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           R ++    I ISSYFKIFL+ M++WEFP  VIF +D+ +L+SN +A+K
Sbjct: 147 RRREIMLGIFISSYFKIFLLAMLVWEFPMSVIFFVDILLLTSNSMALK 194

[Close]

BLAST of Carg17691 vs. Swiss-Prot
Match: sp|Q54GD9|ARV1_DICDI (Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-04
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIK 73
           +Y     AII+SS+ K FLV MMIW++P     I+++FVLSSNV+AIK
Sbjct: 158 KYNYLIMAIILSSFGKGFLVLMMIWDYPFSFGSILNIFVLSSNVVAIK 205

[Close]

BLAST of Carg17691 vs. TrEMBL
Match: tr|A0A1S4DSU3|A0A1S4DSU3_CUCME (protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 136 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 195

Query: 68  SNVIAIKG 74
           SNV+AIKG
Sbjct: 196 SNVVAIKG 203

[Close]

BLAST of Carg17691 vs. TrEMBL
Match: tr|A0A1S4DTN2|A0A1S4DTN2_CUCME (protein arv1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 106 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 165

Query: 68  SNVIAIKG 74
           SNV+AIKG
Sbjct: 166 SNVVAIKG 173

[Close]

BLAST of Carg17691 vs. TrEMBL
Match: tr|A0A0A0L5K8|A0A0A0L5K8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 10  HFVSNLFVSHCL--CRYRYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSN 69
           H +S +F++      R+RY++FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLSSN
Sbjct: 185 HILSRVFLTSSSGDHRHRYREFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLSSN 244

Query: 70  VIAIK 73
           V+AIK
Sbjct: 245 VVAIK 249

[Close]

BLAST of Carg17691 vs. TrEMBL
Match: tr|A0A1S3AVD2|A0A1S3AVD2_CUCME (protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 8   TSHFVSNLFVSHCLCRYRYK--DFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLS 67
           T H +S +F++     +R++  +FFFAIIISSYFKIFLV MMIWEFPS VIFI+DLFVLS
Sbjct: 136 TLHILSRVFLTSSTGDHRHRGTEFFFAIIISSYFKIFLVSMMIWEFPSTVIFIVDLFVLS 195

Query: 68  SNVIAIK 73
           SNV+AIK
Sbjct: 196 SNVVAIK 202

[Close]

BLAST of Carg17691 vs. TrEMBL
Match: tr|A0A2T7C052|A0A2T7C052_9POAL (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G060200 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-11
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 25  RYKDFFFAIIISSYFKIFLVCMMIWEFPSPVIFIIDLFVLSSNVIAIKGKEDLICP 81
           RY++  FA+IISSYFK+FL  MM+WEFPS VIFI+++FVLSSNV+A++GK     P
Sbjct: 158 RYREVLFAVIISSYFKLFLFTMMVWEFPSSVIFIVEMFVLSSNVVALRGKHCTFSP 213

The following BLAST results are available for this feature:

BLAST of Carg17691 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924656.1	5.1e-17	81.54	protein arv1 homolog [Cucurbita moschata] >XP_022924657.1 protein arv1 homolog [...	[more]
XP_023527859.1	5.1e-17	81.54	protein arv1 homolog isoform X5 [Cucurbita pepo subsp. pepo] >XP_023527860.1 pro...	[more]
XP_022979276.1	3.3e-16	80.00	uncharacterized protein LOC111479047 isoform X2 [Cucurbita maxima] >XP_022979277...	[more]
XP_022979274.1	3.3e-16	80.00	protein arv1 homolog isoform X1 [Cucurbita maxima] >XP_022979275.1 protein arv1 ...	[more]
XP_011650613.1	4.0e-14	71.21	PREDICTED: protein arv1 homolog isoform X1 [Cucumis sativus]	[more]

BLAST of Carg17691 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G01510.1	6.8e-08	56.25	Arv1-like protein	[more]
AT1G01020.1	8.9e-08	52.08	Arv1-like protein	[more]

BLAST of Carg17691 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q54GD9\|ARV1_DICDI	2.0e-04	54.17	Protein arv1 homolog OS=Dictyostelium discoideum OX=44689 GN=arv1 PE=3 SV=1	[more]

BLAST of Carg17691 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSU3\|A0A1S4DSU3_CUCME	1.7e-13	67.65	protein arv1 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A1S4DTN2\|A0A1S4DTN2_CUCME	1.7e-13	67.65	protein arv1 homolog isoform X4 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A0A0L5K8\|A0A0A0L5K8_CUCSA	1.7e-13	70.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116660 PE=4 SV=1	[more]
tr\|A0A1S3AVD2\|A0A1S3AVD2_CUCME	1.1e-12	67.16	protein arv1 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483093 PE=4 SV=...	[more]
tr\|A0A2T7C052\|A0A2T7C052_9POAL	8.0e-11	62.50	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G06020...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007290	Arv1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17691-RA	Carg17691-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007290	Arv1 protein	PFAM	PF04161	Arv1	coord: 21..71 e-value: 8.4E-10 score: 39.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17691	Watermelon (97103) v2	carwmbB0138
Carg17691	Wax gourd	carwgoB0166
Carg17691	Cucumber (Gy14) v2	carcgybB0143
Carg17691	Cucumber (Gy14) v1	carcgyB0165
Carg17691	Cucurbita maxima (Rimu)	carcmaB0173
Carg17691	Cucurbita maxima (Rimu)	carcmaB0177
Carg17691	Cucurbita moschata (Rifu)	carcmoB0182
Carg17691	Cucurbita moschata (Rifu)	carcmoB0185
Carg17691	Cucurbita pepo (Zucchini)	carcpeB0192
Carg17691	Cucurbita pepo (Zucchini)	carcpeB0194
Carg17691	Wild cucumber (PI 183967)	carcpiB0149
Carg17691	Cucumber (Chinese Long) v2	carcuB0145
Carg17691	Cucumber (Chinese Long) v3	carcucB0153
Carg17691	Bottle gourd (USVL1VR-Ls)	carlsiB119
Carg17691	Melon (DHL92) v3.5.1	carmeB0138
Carg17691	Melon (DHL92) v3.6.1	carmedB0142
Carg17691	Watermelon (Charleston Gray)	carwcgB0128
Carg17691	Watermelon (97103) v1	carwmB0130