Carg17591-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCCGCATCTGCAACCGCCATTCATCGGAATCAGGTGAGTGATGCAGGTTTTTGAGGTGTTTGATTCACAAATTCTTGTTTAAGTTTCGAGAAATGATGAAAGATGATGTTAATACTTGAATCTAGCGAATGAGTTTTGAGTACAGGAGTATCAGGATTTTATTGCTTTAAGCTTAGTTTTCTTTCATACTGATGCTTCGTTTTTAACCAGGTTGATCTGTCCGACTTCATTAACTGGTCTGGTATCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAGCCAGGTGCTGTTTGTTATATTTTGACCAGAGATGTTTATCAGTTGCATGTACTTCGTTGTAGTTTCTTGAATTTCTTTACATGGCTGAATAATTCGTTTCTCGATTCAATGAAGTTAAAGATGGTGCTGAGTTAGACTAGCTTTCTTGCAGAATATAATTTCCTTCTCTCTTTTCTTCTAATTGTAAATCTTTCGAGTTTAATATCTTCTTGAGACTTTATGTGGGAATGGTGTATACTTAATGAGTTCTCAATATGTGTCTAATAAATATTGGAAGTGTATTGACTTTGTACCGCTCGTATTTTTTAACACATATTTATTGTGCTAACAAGTGTCCAATATATGTTCAATAAGTGTTAGTGTCAAAGTATCCAACACTTGTCGGGCACGGACGGACACTCTTGCCACATTAAAATGTCTGTGCTTCTTAAGGGTATATGGAAGTTGGTGAATATGAACTTAGCTCTCTTAGGCCAAGTGGCTATGCCGCTTTCTTTTAGAGTCTTATTCTTTATGGCGTATGATTATTGTTAGCATGACTGTCACTTCAGGGGTGGGACACATATGTGGTCTCTGAACTAAAGACATATTAAAAGTCCTTGGAAAACCATTTTCTATTGCATACCGAGCTTTATCAACTACATTAAATTCTCTGTGGGGAGCAGGGCTTGCATTCGTTTATGGGAAGAATTTTGGGCTGGTATCAACGTCTTTCAAAATTCTCTTCTCGTCTTTATAATATTACCCTGTGAAAGAGATGTTGGTCAATTCATTGATAATTCGTACTTCCTTCCACTTGATTTAGAATATGAAGTCGGGTTTTCTATTGCATACTTCCTTCCACTTGATTTTCATTTTCATTTTCATTTTCATTTTAGAAGATATCTTTGTGATATTGAGTCGAGATTTATCCAAATATTATCTCCATTTTTAGTAATACGCATAGTTAGGTTCTTCAGCCATCTGGTATCTTTTGTTTTTTTACCCATCTCCCCACCCCCCTCTTTCACTCTGGATTTTGAAGGCTAAAATCTAAAAAAAGATCAGGTTTTTCACCTGGCTGGTTTCTTTGGGAAGATTAGACACACCATAGACTTTGTCTAGAAGCCTTCATCTTTGTCTGGAAAAAGATCATTTGCTATAGAGATGTCACCTTGTCGTGAAACTTTAGAGTTGAAGCAATTTTCTCACTATTTTGTTGAATCTATGGCTTGCGAGAAATAAAGTATTTTGAGGGTACCGAAGTCTTGGAAGAGGTTTGGAGTTTGGAAAATTTTAATCTCTTGTGGCGTTCTCTTTATCTTTTTATTCTTAACCATTGAACCAACCTACTGTAATTTTGTTTCAAGTTTTTGTTTATAGACTGCTCATCTGTTTGGGTCTATTTTTTAGGCCACTCCTTTTGTGTATTCATTCAGCTTATTAAAAGTTGATGTATCATATGAAGCAAGAGGCTAAAATACCATTTTTGGTCCTTGTAATTTGACACTTGTTCCATTTTAGTTCCTATACTTTCGAATGTAGAATTAATTTAGTCATTATTAATTTGAATGGTACAATAATAATTTTTATTAGAGGAAAGACATTGTGAGTATCTTTTCAACATTTATAGAGGTAGGGCTAATAGATACAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAGTTAATCATGAACAATATAGGGACTAATTTTAAGATTACTAGAAGACGGAGACTACATTTTTTACATTTGAAAGTACATAAGACCAAAATAAAACAAGTATCAAAGTCTGGGGTCAAAATGGTATTTTTGACCTAAAAGAAAATTTTCATGATAAAATAGGCATCTCTTTTTCCCTGTAATTTCTTCCCAACAGCCAATGGAAATTATTATACCGAGGGTTTGAAGCAACTTTTATCTTAAAATAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCGGATGAGCAGATTTTGATGTACATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATCAAGGGACCTGAAGAGGAAGGCAAGTATTCTATTACACCTTTTATTAGTTCTAATTGGTTTATTTTTCTTCTGGATATTTCTATTTCAGTATTGCTTTTCATGTATAACTATAGTTCATCTAATCTATTGGCATATTTTTTTTAACATGTCTTACATGTCCAACGTGGCCAATGAGGGGTATGATCATTCCATTTTGAAGTCTTACTATTGTGATTTTTTTATTATTTTTTTTTTTTTTTATTTTTTATTTGTTCTTGATGTCGTCTTTTTTTTTTTGTTTAGTGTTTTTATTTATTTCTTATTGAGTGCTTTTGTGTACACTAGAGAAGTTGGCATGCTTTTTGAAAGAAGAATAGACTGTTTTTCGAATGATAGATTTCGGTTAGACTATTTCGGATTTATATAATATCCACCATTAAGTTGTTGTTATTTGTATTGGTGGGTTTTTATTTTCAGAGTGGGTGGCGCTTTATTTGGGAGTCGTCGCAAGCTTCTTTTGTGATGCAGGAATGTTTTGAGGGTGGCTTGTGGTTTGGTCAGTGGGGATTATGCTGTGGGGGGGTTTTTTTTTTTAGCAAGGCTGGGTGCTGGATTGTAGTTACGGGCGAGATGAGCGTGAGGTTTTGTCATTAAGTCCTTGCCTTGCTGGTATTGTTCAACCGCCGGCGCGCAGTTGGTTAGTTGCTAGGGAGATCTGGCTACGAATTGCTCGCTTTTGTTCTGCATTGACATATTAG ATGGCTGCCGCATCTGCAACCGCCATTCATCGGAATCAGGTTGATCTGTCCGACTTCATTAACTGGTCTGGTATCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAGCCAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCGGATGAGCAGATTTTGATGTACATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATCAAGGGACCTGAAGAGGAAGGCAAGTATTCTATTACACCTTTTATTAGTTCTAATTGGTTTATTTTTCTTCTGGATATTTCTATTTCAAGTGGGTGGCGCTTTATTTGGGAGTCGTCGCAAGCTTCTTTTGTGATGCAGGAATGTTTTGAGGGTGGCTTGTGGTTTGGTCAGTGGGGATTATGCTGTGGGGGGCAAGGCTGGGTGCTGGATTGTAGTTACGGGCGAGATGAGCGTGAGGTTTTGTCATTAAGTCCTTGCCTTGCTGGTATTGTTCAACCGCCGGCGCGCAGTTGGTTAGTTGCTAGGGAGATCTGGCTACGAATTGCTCGCTTTTGTTCTGCATTGACATATTAG ATGGCTGCCGCATCTGCAACCGCCATTCATCGGAATCAGGTTGATCTGTCCGACTTCATTAACTGGTCTGGTATCGAGTGCCTTAACCAGAATTTCAGCCACACTTTTACAAATGCTCTTAGCCAGACTTGTAGGGATAATGATAGCTTGCTTTTGGAGAGTGATGCGGATGAGCAGATTTTGATGTACATACCTTTTAACCAAGTCATTAAATTGCATTCCTTGGTCATCAAGGGACCTGAAGAGGAAGGCAAGTATTCTATTACACCTTTTATTAGTTCTAATTGGTTTATTTTTCTTCTGGATATTTCTATTTCAAGTGGGTGGCGCTTTATTTGGGAGTCGTCGCAAGCTTCTTTTGTGATGCAGGAATGTTTTGAGGGTGGCTTGTGGTTTGGTCAGTGGGGATTATGCTGTGGGGGGCAAGGCTGGGTGCTGGATTGTAGTTACGGGCGAGATGAGCGTGAGGTTTTGTCATTAAGTCCTTGCCTTGCTGGTATTGTTCAACCGCCGGCGCGCAGTTGGTTAGTTGCTAGGGAGATCTGGCTACGAATTGCTCGCTTTTGTTCTGCATTGACATATTAG MAAASATAIHRNQVDLSDFINWSGIECLNQNFSHTFTNALSQTCRDNDSLLLESDADEQILMYIPFNQVIKLHSLVIKGPEEEGKYSITPFISSNWFIFLLDISISSGWRFIWESSQASFVMQECFEGGLWFGQWGLCCGGQGWVLDCSYGRDEREVLSLSPCLAGIVQPPARSWLVAREIWLRIARFCSALTY
BLAST of Carg17591-RA vs. NCBI nr
Match: XP_022937687.1 (PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_023521129.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023537940.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 173.3 bits (438), Expect = 7.9e-40 Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Carg17591-RA vs. NCBI nr
Match: XP_022965977.1 (PITH domain-containing protein At3g04780-like [Cucurbita maxima]) HSP 1 Score: 169.9 bits (429), Expect = 8.8e-39 Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0
BLAST of Carg17591-RA vs. NCBI nr
Match: XP_022946891.1 (PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022946892.1 PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022946893.1 PITH domain-containing protein At3g04780-like [Cucurbita moschata] >XP_022999328.1 PITH domain-containing protein At3g04780-like [Cucurbita maxima] >XP_022999329.1 PITH domain-containing protein At3g04780-like [Cucurbita maxima] >XP_023521729.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023521946.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545536.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545537.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo] >XP_023545538.1 PITH domain-containing protein At3g04780-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38 Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Carg17591-RA vs. NCBI nr
Match: XP_008455826.1 (PREDICTED: PITH domain-containing protein At3g04780 [Cucumis melo]) HSP 1 Score: 166.4 bits (420), Expect = 9.7e-38 Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Carg17591-RA vs. NCBI nr
Match: XP_004139228.2 (PREDICTED: PITH domain-containing protein At3g04780 [Cucumis sativus] >KGN60819.1 hypothetical protein Csa_2G011520 [Cucumis sativus]) HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33 Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg17591-RA vs. TAIR10
Match: AT3G04780.1 (Protein of unknown function (DUF1000)) HSP 1 Score: 120.9 bits (302), Expect = 8.5e-28 Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0
BLAST of Carg17591-RA vs. Swiss-Prot
Match: sp|Q9SQZ9|PITH1_ARATH (PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana OX=3702 GN=At3g04780 PE=1 SV=2) HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26 Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0
BLAST of Carg17591-RA vs. Swiss-Prot
Match: sp|O43396|TXNL1_HUMAN (Thioredoxin-like protein 1 OS=Homo sapiens OX=9606 GN=TXNL1 PE=1 SV=3) HSP 1 Score: 67.4 bits (163), Expect = 2.0e-10 Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 0
BLAST of Carg17591-RA vs. Swiss-Prot
Match: sp|Q920J4|TXNL1_RAT (Thioredoxin-like protein 1 OS=Rattus norvegicus OX=10116 GN=Txnl1 PE=1 SV=3) HSP 1 Score: 65.9 bits (159), Expect = 5.8e-10 Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 0
BLAST of Carg17591-RA vs. Swiss-Prot
Match: sp|Q8CDN6|TXNL1_MOUSE (Thioredoxin-like protein 1 OS=Mus musculus OX=10090 GN=Txnl1 PE=1 SV=3) HSP 1 Score: 65.1 bits (157), Expect = 9.9e-10 Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 0
BLAST of Carg17591-RA vs. Swiss-Prot
Match: sp|Q9USR1|TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=txl1 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.0e-07 Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 0
BLAST of Carg17591-RA vs. TrEMBL
Match: tr|A0A1S3C1X8|A0A1S3C1X8_CUCME (PITH domain-containing protein At3g04780 OS=Cucumis melo OX=3656 GN=LOC103495923 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 6.4e-38 Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of Carg17591-RA vs. TrEMBL
Match: tr|A0A0A0LIE3|A0A0A0LIE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011520 PE=4 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.2e-33 Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0
BLAST of Carg17591-RA vs. TrEMBL
Match: tr|A0A059D3U4|A0A059D3U4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02113 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27 Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of Carg17591-RA vs. TrEMBL
Match: tr|A0A059D3D9|A0A059D3D9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B02113 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27 Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of Carg17591-RA vs. TrEMBL
Match: tr|B9REQ3|B9REQ3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1427670 PE=4 SV=1) HSP 1 Score: 129.4 bits (324), Expect = 8.7e-27 Identity = 62/91 (68.13%), Postives = 76/91 (83.52%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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