Carg17553-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17553-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	GPI-anchored protein-like protein
Location	Cucurbita_argyrosperma_scaffold_183 : 187339 .. 191260 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCATCGATTCTCTCGAGAGGTCACAATTACCGCAACCTTTTCTCCAGGTTCGAAATAATCCTTTGTTCCACTGTCTGGGTCTATTTACAACTAGCCAATTAAGAATTCTCATATGTACGAGTACTAGCAAGTGCATCTTTGATGCAGTCCTCGATTCTCCCAAAAGGTTACAATTACAAAGAGCAAACATATTAATGGCGAGTTACACATTTTTGCTATTCTACTAATACATGTACTTGCTCTACTATTCCGTTGAAGCCTGCCTAAGGAAGTCATCTTTCTAGGCAAATTCATCAAAGAAATCAAAGAAATATAAAGTGTGAATAAAGTCGGTCAAACTTACGATTCTTTTCATAATGATGAATGGCCTTCTTTTTCATGTCTTCTGTGATGTCCCACGTTGGTTGGAGAGGAGAACAAACCACCATTTATAAGGGTGTAGAAACCTTCCCCTAGCAGACGTGTTTTGAAGCCTTGAAGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAGCAATGGATCTGAGGCATTACAAATGGTATCAGAGCCAGACACTGGACAATGTGCCAGCCTTCTCGCTGTTCCCCAAAGGGGGTAGACACAAGCTAGCGGTGGATCTGGGGCGTTACAAATGGTATCGAGCCAGACACTGGACAATGTGTCAGCCTTTTCGCTGTTCCCTGAAGGGGGTAGACACAAGGCGGTGTGCCAGTAAAGACGCTGGCCCCAAAGAGGGGTGGATTTAGGGGCAGTCCCACATCGATTGGAGGAAGGAAAGAGTGCCAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTTTGATGTCCCACATTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATACCTGCTAGCAGTGGATCTAGGGCGTTACAAATGGTATCAGAGCAAAACACTGGACAATGTGCCAGCCTTCTCGCTGTTCCCCGAAGGTGGGTAGACACGAGGTGGTGTGCCAGTAAAGACGCTGGGTCTCGAAGGGGGGTGGTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGCGTTTTAAAGCCTTAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGATCTGGGGCGTTACACATCTTTAATACAGTGAAACTTCAATACCTGTCTACCTGCAGTTGATTTAGAAGAGCTTTTCAAAGGCTTTAACATCTACAAAAACTCACAAAGCCAGTTGTATCTCAACAAAAACTCCAAAGCACAATGTATAGCAGAACAAATCGCGAAGAAATTGTACAACCAACTGCCTTGCAGTCGAACCATCGACGGTGACGCCCTTTTGCCATCGAACCAAAGCCAACTTCCATTGTTCACTCATTACTCAAGAAAGTGCCAAGTTAACCTCAATCATACACTAGACGCTGTTATTTTACCCATATACGTGCCTAACTCAGAAGCTGAGCTTGTGCTTGCTGGCTGCAAACATTCTCATGCTTCAAAGTACTTGGGTAATGCAACTTATACAAGGGTAGGCCTTGCAAAAAATAAAGATTGTTTGGTGATTGCTTTGGGTACTGATGCACTTGGTGGAAGCTATTCTGCTGGTGTCTCTCGGATTCAAAATATCGGTCGGGTTTATTTCTTGGGATTTATTGTTTTCGGGGTCATTTCTTTGTTTTGGTGAGGATCAATAGGGCTTGTTTCCTTTCGTCTCCTACATGTTACGATTTACGTTCAATGAACGTCTCAATGAGTCATGTAATGCAGTACACCTTCACTTTATCCAATATGGAACAGCTTGAAGAATTTATTTCTTTATCTTTTTCCTTTCTATTCTATAACTGTACATCATTCGGTCAACTTACTAAATAGCCCAAGCCTACCGCTAGCAGATATTGTTCTCTTTGGGTTTTCCCTTTCGAGTTTTCCCTCAAGGTTTTAAAACATGTATGCTAAGGAGAGGTTTCCACACCCTTATAAGTAATGCTTTGTTCACCTCTCCAACCGAGGTGGATCTCACAATCCACCCCCTAGAGGGCCCAACGTCCTCCCTGGCACACCGTCTAGTGTTTGGCTCTGATACCATTTGTAATAGTCCAACCCCACCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTTCGAGTTTTCCCTCAAGGTTTTAAAACATGTCTGCTAGGAAGAGATTTCCACACCCTTATAAGTAATGCTTCATTCACCTCTCCAACCGATGTGGATCTCACAATCCCCCCTAGAGGGCCCAACGTCCTCCCTGGCACACCGTCCAGTGTTTGGCTCTGATACCATTTGTAATAGTCCAACCCAACTGCTAGTAGATATTATCCTCTTTGGGTTTTCCCTTTCGGGCTTCCCCTCAAAGTTTTAAAACGTGTCTGCTAGGGAGAAGTTTCCATACACTTATAAGGAATGTTTCGTTCCCCTCTCCAGCAGCCTAATAGGATCTGCTTTAAATCCCAAGAAAAACATCTTATGATAGAAAGCTGAACCAGTGCCCATATCGAGGAAGGAAGTAAAAAGTGAAAAAGTAAACAAAAGAAGAAACCCCAACTTCAGAAAAGAACCTGCTGAGCAGCCAAAGGGAAATAAATAAAACACATGGAAGGAAACACATGAAGAATCCTCCGGTACGATCATAAAACGATACTTTAACGAAGCTTAGATACCGATAATCCCCCAAAGAAACAACCAGGAAGATCAAAATCATCAAAAGGTAACGAAATCCGAAGCTAAAATATGAATGCCTATTGATAGAAATCAGAACTACAACATGTTTTGCTTGCTTGTGAATTGTGCATCACCTAAACTGTTTGGAATATTGTGCATAGAATAAATGAAAATGAAACATGTTGAGAAAAAGAAACTCAACACCCTTCCTTAATCAAATGAGCAAGAATATATCCTAGCAGGTCCACATCTACCCAGTTCTTTGGTAGACGAACACGACTCTCCACAATGGTACGATATTGTCCACTTTGAGCATAAACTCTCATGACTTTGCTTTGGGCTTCTCCAAAACGCCTCAAACCAATGGAGAGAGTATTCCTCACTTATAAACCCATGATCATTTCCTAAATTAGCCAATGTGGGACTTTCATCCAACACCTCCCCTCGAACAAAGAACGCCTCCCCTTAATCGAAGCTCGACTCCTTTTCTTTTGGAGTCATTTGTTCGACATTTGAGGATTCTATTGACATGACTAAGTTTAGGACATGACTCTAATACCATGTTAGATGAACACGATTCTCCACAATGGTATGATATTATCCATTTTGAGCATAAGCTCTCGTGGCTTTACTTCGGGCTTCCCCACAACGCCTCAAACCAATGGAGAGAGTATTCTTTATTTATAAACCCATGATCATTCCCTAAATTAGCTGATGTGGGACTTTCATCATCCAACATTCATAACACAGCTGTAGAGAATAGTTCAGAAATGTCTTTGCAATTCCAAATCTTGAGACAATTTTAGAACTGAGGTAGGTGGGATTTCATACCTATACGCCTTTACAGGAATGACTAATGAACACATAAAGTGTAATATGGAAAGCTTATACCCTTCACGAATAAAGCAAAGCAATATTGCTAGAACAAGCAAATTCTAAAGAGATCAGAATGGAAGAACCCAAAAAAAACGATAAAAAGAGACAAGAACCTCGTATTCTTTGTCCAAGCAAGCCTGATGCCTTCTCCTTGACCCTCCTGCAGCTGCATAATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACAGTGTTGCCCGTGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAG

mRNA sequence

ATGCATTCATCGATTCTCTCGAGAGGTCACAATTACCGCAACCTTTTCTCCAGTCGAACCATCGACGGTGACGCCCTTTTGCCATCGAACCAAAGCCAACTTCCATTGTTCACTCATTACTCAAGAAAGTGCCAAGTTAACCTCAATCATACACTAGACGCTGTTATTTTACCCATATACGTGCCTAACTCAGAAGCTGAGCTTGTGCTTGCTGGCTGCAAACATTCTCATGCTTCAAAGTACTTGGGTAATGCAACTTATACAAGGGTAGGCCTTGCAAAAAATAAAGATTGTTTGGTGATTGCTTTGGGTACTGATGCACTTGGTGGAAGCTATTCTGCTGGTGTCTCTCGGATTCAAAATATCGGTCGGCTGCATAATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACAGTGTTGCCCGTGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAG

Coding sequence (CDS)

ATGCATTCATCGATTCTCTCGAGAGGTCACAATTACCGCAACCTTTTCTCCAGTCGAACCATCGACGGTGACGCCCTTTTGCCATCGAACCAAAGCCAACTTCCATTGTTCACTCATTACTCAAGAAAGTGCCAAGTTAACCTCAATCATACACTAGACGCTGTTATTTTACCCATATACGTGCCTAACTCAGAAGCTGAGCTTGTGCTTGCTGGCTGCAAACATTCTCATGCTTCAAAGTACTTGGGTAATGCAACTTATACAAGGGTAGGCCTTGCAAAAAATAAAGATTGTTTGGTGATTGCTTTGGGTACTGATGCACTTGGTGGAAGCTATTCTGCTGGTGTCTCTCGGATTCAAAATATCGGTCGGCTGCATAATGGCCTTGCTCTCCCACAAACTTGGCTTCTTCCTCTACAGTGTTGCCCGTGGCTTGCTGCTATTGTCGTGCTCAGTACATGGCGATGGACCTAG

Protein sequence

MHSSILSRGHNYRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLHNGLALPQTWLLPLQCCPWLAAIVVLSTWRWT

Homology

[Close]

BLAST of Carg17553-RA vs. NCBI nr
Match: XP_022938135.1 (uncharacterized GPI-anchored protein At3g06035-like [Cucurbita moschata] >XP_023537309.1 uncharacterized GPI-anchored protein At3g06035-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 107/115 (93.04%), Postives = 109/115 (94.78%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  SRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA
Sbjct: 67  YNQLPCSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLH 127
           GCKHS ASKYLGN TYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGR++
Sbjct: 127 GCKHSQASKYLGNTTYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRVY 181

[Close]

BLAST of Carg17553-RA vs. NCBI nr
Match: XP_022965956.1 (uncharacterized GPI-anchored protein At3g06035-like [Cucurbita maxima] >XP_022965957.1 uncharacterized GPI-anchored protein At3g06035-like [Cucurbita maxima])

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  SRTI+GDALLPSNQSQLPLFTHYS KCQVNLNHTLDAVILPIYVPNSE  LVLA
Sbjct: 67  YNQLPCSRTINGDALLPSNQSQLPLFTHYSSKCQVNLNHTLDAVILPIYVPNSEDGLVLA 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLH 127
           GCKHS ASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVS+IQNIGR++
Sbjct: 127 GCKHSQASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSQIQNIGRVY 181

[Close]

BLAST of Carg17553-RA vs. NCBI nr
Match: KGN60893.1 (hypothetical protein Csa_2G021640 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 9.6e-36
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLP NQSQLP+ +HYSRKC+VNLNHT+D VILP+YVPNS  +L+L 
Sbjct: 67  YNKLPCSAAIEGDVLLPFNQSQLPM-SHYSRKCEVNLNHTVDGVILPVYVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIG 124
            C HS A KYL NATYTRVGLA N+DCLVIALGTDA+ GSYSAG+S + +IG
Sbjct: 127 NCTHSQAPKYLDNATYTRVGLATNEDCLVIALGTDAISGSYSAGLSLVPHIG 177

[Close]

BLAST of Carg17553-RA vs. NCBI nr
Match: XP_008454795.1 (PREDICTED: uncharacterized GPI-anchored protein At3g06035-like isoform X1 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLPSNQSQLPLFT YSRKC+VNLNHT+D VILP++VPNS  +L+L 
Sbjct: 67  YSQLPCSAAIEGDVLLPSNQSQLPLFTEYSRKCEVNLNHTVDGVILPVHVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRI 120
            C HS A KYL NATYT VGLA N+DCLVIALGTDA+ GSYSAG+S +
Sbjct: 127 NCTHSQAPKYLDNATYTSVGLATNEDCLVIALGTDAISGSYSAGLSLV 174

[Close]

BLAST of Carg17553-RA vs. NCBI nr
Match: ABR67420.1 (GPI-anchored protein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLPSNQSQLPLFT YSRKC+VNLNHT+D VILP++VPNS  +L+L 
Sbjct: 67  YSQLPCSAAIEGDVLLPSNQSQLPLFTEYSRKCEVNLNHTVDGVILPVHVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRI 120
            C HS A KYL NATYT VGLA N+DCLVIALGTDA+ GSYSAG+S +
Sbjct: 127 NCTHSQAPKYLDNATYTSVGLATNEDCLVIALGTDAISGSYSAGLSLV 174

[Close]

BLAST of Carg17553-RA vs. TAIR10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 34/109 (31.19%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 23  GDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYL 82
           G A +P  + Q   +     KC +N++ T D  I+P  VP  E+ LVL     S  S  L
Sbjct: 75  GSATVPGTEPQFANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSL 134

Query: 83  GNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLHNGLAL 132
            ++ +T +G+ K  D +V+ L T+   GSYS      Q       G+ L
Sbjct: 135 NDSKFTGIGIGKEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGL 183

[Close]

BLAST of Carg17553-RA vs. TAIR10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-09
Identity = 28/86 (32.56%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 35  PLFTHYS---RKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYLGNATYTRVG 94
           P  T+Y     +C+++ N T D +ILP+ +PN    L L     +  ++YL ++ Y   G
Sbjct: 89  PRLTNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAG 148

Query: 95  LAKNKDCLVIALGTDALGGSYSAGVS 118
           +   K+ +V+ L T   GGS++AGV+
Sbjct: 149 VGSEKEWMVVVLTTSTPGGSFTAGVA 174

[Close]

BLAST of Carg17553-RA vs. TAIR10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored)

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 29/93 (31.18%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 23  GDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYL 82
           G A +P     +P F +   KC++N N T D +IL +  P   +   L+   +   +K L
Sbjct: 76  GSASVPGTDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFANV-LTKNL 135

Query: 83  GNATYTRVGLAKNKD--CLVIALGTDALGGSYS 114
            ++ +T  G+  + D   LV  L T+  GGSYS
Sbjct: 136 NDSKFTGAGVGIDSDGIWLVTVLTTNTPGGSYS 167

[Close]

BLAST of Carg17553-RA vs. Swiss-Prot
Match: sp|Q84MC0|UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-09
Identity = 34/109 (31.19%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 23  GDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYL 82
           G A +P  + Q   +     KC +N++ T D  I+P  VP  E+ LVL     S  S  L
Sbjct: 75  GSATVPGTEPQFANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSL 134

Query: 83  GNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLHNGLAL 132
            ++ +T +G+ K  D +V+ L T+   GSYS      Q       G+ L
Sbjct: 135 NDSKFTGIGIGKEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGL 183

[Close]

BLAST of Carg17553-RA vs. TrEMBL
Match: tr|A0A0A0LGC0|A0A0A0LGC0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021640 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.3e-36
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLP NQSQLP+ +HYSRKC+VNLNHT+D VILP+YVPNS  +L+L 
Sbjct: 67  YNKLPCSAAIEGDVLLPFNQSQLPM-SHYSRKCEVNLNHTVDGVILPVYVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIG 124
            C HS A KYL NATYTRVGLA N+DCLVIALGTDA+ GSYSAG+S + +IG
Sbjct: 127 NCTHSQAPKYLDNATYTRVGLATNEDCLVIALGTDAISGSYSAGLSLVPHIG 177

[Close]

BLAST of Carg17553-RA vs. TrEMBL
Match: tr|A0A1S3BZI4|A0A1S3BZI4_CUCME (uncharacterized GPI-anchored protein At3g06035-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495110 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.3e-36
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLPSNQSQLPLFT YSRKC+VNLNHT+D VILP++VPNS  +L+L 
Sbjct: 67  YSQLPCSAAIEGDVLLPSNQSQLPLFTEYSRKCEVNLNHTVDGVILPVHVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRI 120
            C HS A KYL NATYT VGLA N+DCLVIALGTDA+ GSYSAG+S +
Sbjct: 127 NCTHSQAPKYLDNATYTSVGLATNEDCLVIALGTDAISGSYSAGLSLV 174

[Close]

BLAST of Carg17553-RA vs. TrEMBL
Match: tr|A6YTC6|A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.3e-36
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 12  YRNLFSSRTIDGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLA 71
           Y  L  S  I+GD LLPSNQSQLPLFT YSRKC+VNLNHT+D VILP++VPNS  +L+L 
Sbjct: 67  YSQLPCSAAIEGDVLLPSNQSQLPLFTEYSRKCEVNLNHTVDGVILPVHVPNSADKLMLT 126

Query: 72  GCKHSHASKYLGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRI 120
            C HS A KYL NATYT VGLA N+DCLVIALGTDA+ GSYSAG+S +
Sbjct: 127 NCTHSQAPKYLDNATYTSVGLATNEDCLVIALGTDAISGSYSAGLSLV 174

[Close]

BLAST of Carg17553-RA vs. TrEMBL
Match: tr|M5W0Y4|M5W0Y4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G327200 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 22  DGDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKY 81
           D  A+ P N  + P F    +KC +++N T D +ILP+ VPN + +LV+    H+  +KY
Sbjct: 70  DDYAIEPGNGPKFPKFDKLIKKCHIDINTTTDGIILPVCVPNWDPDLVIKNYTHTQYAKY 129

Query: 82  LGNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIGRLHNGLALPQTWLLPLQC 141
           L  + YT  G+    D +V+ L TD   GS+S G   +  IG +H  +A+     L L C
Sbjct: 130 LNGSKYTGAGVGTEDDWVVVVLSTDTESGSFS-GAPSLAAIGMVHYMMAMLLGLFLILLC 188

[Close]

BLAST of Carg17553-RA vs. TrEMBL
Match: tr|A0A2P5DSY2|A0A2P5DSY2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_034360 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.2e-12
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 23  GDALLPSNQSQLPLFTHYSRKCQVNLNHTLDAVILPIYVPNSEAELVLAGCKHSHASKYL 82
           G  ++PS Q+QL  +    +KC +N+N T D VILP+ VP     LVL    H+  +KYL
Sbjct: 76  GPNIVPSTQTQLSDYPKLLKKCGINVNTTTDGVILPVCVPKLVPTLVLTNYTHTSYAKYL 135

Query: 83  GNATYTRVGLAKNKDCLVIALGTDALGGSYSAGVSRIQNIG 124
            N+ YT  G+    D +V+ L T    GS+S  VS +  +G
Sbjct: 136 NNSKYTGAGVGSEDDWMVVVLSTSTTAGSFSRAVSLVSQMG 176

The following BLAST results are available for this feature:

BLAST of Carg17553-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938135.1	2.3e-53	93.04	uncharacterized GPI-anchored protein At3g06035-like [Cucurbita moschata] >XP_023...	[more]
XP_022965956.1	1.4e-50	89.57	uncharacterized GPI-anchored protein At3g06035-like [Cucurbita maxima] >XP_02296...	[more]
KGN60893.1	9.6e-36	68.75	hypothetical protein Csa_2G021640 [Cucumis sativus]	[more]
XP_008454795.1	1.3e-35	70.37	PREDICTED: uncharacterized GPI-anchored protein At3g06035-like isoform X1 [Cucum...	[more]
ABR67420.1	1.3e-35	70.37	GPI-anchored protein-like protein [Cucumis melo subsp. melo]	[more]

BLAST of Carg17553-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06035.1	1.7e-10	31.19	Glycoprotein membrane precursor GPI-anchored	[more]
AT1G54860.1	5.4e-09	32.56	Glycoprotein membrane precursor GPI-anchored	[more]
AT5G19240.1	6.2e-05	31.18	Glycoprotein membrane precursor GPI-anchored	[more]

BLAST of Carg17553-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84MC0\|UGPI4_ARATH	3.1e-09	31.19	Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg17553-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGC0\|A0A0A0LGC0_CUCSA	6.3e-36	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021640 PE=4 SV=1	[more]
tr\|A0A1S3BZI4\|A0A1S3BZI4_CUCME	8.3e-36	70.37	uncharacterized GPI-anchored protein At3g06035-like isoform X1 OS=Cucumis melo O...	[more]
tr\|A6YTC6\|A6YTC6_CUCME	8.3e-36	70.37	GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=...	[more]
tr\|M5W0Y4\|M5W0Y4_PRUPE	2.2e-12	35.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G327200 PE=4 SV=1	[more]
tr\|A0A2P5DSY2\|A0A2P5DSY2_PARAD	2.2e-12	38.61	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_034360 PE...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17553	Carg17553	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17553-RA	Carg17553-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17553-RA.CDS.3	Carg17553-RA.CDS.3	CDS
Carg17553-RA.CDS.2	Carg17553-RA.CDS.2	CDS
Carg17553-RA.CDS.1	Carg17553-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17553-RA.exon.3	Carg17553-RA.exon.3	exon
Carg17553-RA.exon.2	Carg17553-RA.exon.2	exon
Carg17553-RA.exon.1	Carg17553-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33976:SF2	SUBFAMILY NOT NAMED	coord: 24..119
None	No IPR available	PANTHER	PTHR33976	FAMILY NOT NAMED	coord: 24..119
None	No IPR available	PRODOM	PD208950		coord: 23..131 e-value: 9.0E-10 score: 149.0