Carg17203-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17203-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BRCA1-A complex subunit BRE
Location	Cucurbita_argyrosperma_scaffold_110 : 402426 .. 404267 (-)
Sequence length	816

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGGTAAACAATTCCGCTTACTATCTCTTCCTTGAAAATTCAGGGATAACAAAATCAAATGGCGATTTCTAGTTTATTACATCGATCGGAAATGGATGATATTCGGAGTTCTTTCTTTCTTTTTTCCCTCCATTTTCCCACCCCGATGATAGTATTTACTGTCGCTATAATATGGCGATAGAAAGCGAACGGTTTGTTGAACAGATCACTTATTCTTACTGTTTTGATATTCAGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGTAAGACCTGTTTTCCATTGTTGTTATCATAATATCCTTTCAATTCTTTTCTCTTTCCCTGTAAATGGTTGACAGATTGTTTGATAGCTGTTACCTGTCGTAGGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGTTCTTCAGGGTTTTCCTTTGATTGAGCCTTCTTCTGTTTCTAATGTTTTGGGTATAATTCAGCTTGAATTCAAAGGCAACTTTACTTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGTAACGTTCTTCATTATAGTGTTTATTACACTGTCCTAACTCTGTTTTGATAATCAATTGCATGAGTTTAGGAATTTAAGGGATCGGGTATTGGACTTGGTTTCTTGATAATACATTCTTGCTGGATGCCTGTAGAAATGTATAAAACTTTATAATTTAGTTTTCATGCTTGGAAATTGAATGAGAGAACTGCTGCTAGTTAATTATTCCAGATTTTTCATGCTTGAATTATAGTAGTGTAGAAGTTAAACCATCCCTATAATGTTTTCTTTTTAAATTTTTTTTTTTTTTTGCTTATAACCATGTATTCCTTTAGTTGGGCAAGCTGCTCCTTATACAGATATCTGTGTTCTCTCCTTAAGGTTCTTTTATTTTCAATGGTAACTTAACCAAAACTACCTTTCTGCAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTAGTATTTTAAAGTTTGTGGTTGTACTTTCCTTGAATAGTAAAGAATTGATACTGAGAATTCTATTCTCTCTCTTTATTCTCATATGTGTGGCTTCTATGCCTTTGAATTTTAGCATAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTCCTTTCTGAACTTCTGGTTTTCCTGTTCCTCTATTATTTCCCATTCTCATCATTGTTTATAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

mRNA sequence

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Coding sequence (CDS)

ATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Protein sequence

MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM

Homology

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BLAST of Carg17203-RA vs. NCBI nr
Match: XP_022940533.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 496.5 bits (1277), Expect = 5.1e-137
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

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BLAST of Carg17203-RA vs. NCBI nr
Match: XP_022981789.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 1.5e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

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BLAST of Carg17203-RA vs. NCBI nr
Match: XP_023525358.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.0 bits (1273), Expect = 1.5e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

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BLAST of Carg17203-RA vs. NCBI nr
Match: XP_008466484.1 (PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo])

HSP 1 Score: 467.2 bits (1201), Expect = 3.3e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203-RA vs. NCBI nr
Match: XP_004136379.1 (PREDICTED: BRCA1-A complex subunit BRE [Cucumis sativus] >KGN60040.1 hypothetical protein Csa_3G872710 [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 6.2e-127
Identity = 220/240 (91.67%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPP+IAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSSDTVPPIIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDI+FGPEDENFHPF+SKVDEGEG H+SL NSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIVFGPEDENFHPFSSKVDEGEGDHNSLHNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLP+WIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPTWIDGM 240

[Close]

BLAST of Carg17203-RA vs. TAIR10
Match: AT5G42470.1 (Brain/reproductive organ-expressed protein (InterPro:IPR010358))

HSP 1 Score: 287.3 bits (734), Expect = 8.4e-78
Identity = 133/242 (54.96%), Postives = 188/242 (77.69%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           M+ +  PPLIA Q++YL NH P  + I N+WSG++  P I+DRFTLVIPYCLE +KWD++
Sbjct: 1   MAFEEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPF-TSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQE 120
           Y++E     PD +FGP+DE+F P   S +   +    SL+ +L +W+ +D +RL  ++Q 
Sbjct: 61  YNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQG 120

Query: 121 LRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLV-DINI 180
           LRD+Y +YQR+RV  V+D+R+KFE+ T+L+R+GIEM ++SGV+KPE+VKFAVPLV D+NI
Sbjct: 121 LRDQYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVKFAVPLVMDMNI 180

Query: 181 NKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWID 240
           NKM+ GCPW+H QKI+LQV+YP++RKY + P+APRLKLVS  +LK+L S+ED+KL  W+D
Sbjct: 181 NKMVVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFSVEDVKLSPWMD 240

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BLAST of Carg17203-RA vs. Swiss-Prot
Match: sp|Q6GPL9|BABA2_XENLA (BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A  P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L +WN  DP  L  +++EL  +Y  YQ  R+   E  RL FE  T+    + G+ M + +
Sbjct: 114 LSEWNPSDPECLLLVVKELVQQYHQYQCSRLS--ESSRLMFEYQTLQEEPQYGLNMEIYA 160

[Close]

BLAST of Carg17203-RA vs. Swiss-Prot
Match: sp|B6NXD5|BABA2_BRAFL (BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10
Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF + IP+  + +KW++++D+  P + PD +F  E+ NF P   K++           +
Sbjct: 56  DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDPDIEKLE-----------N 115

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREG---IEMHLS 160
           L  W+ K+P  L   +++L   Y  YQ++ +EG    RL+FE  ++   E    +E+H+ 
Sbjct: 116 LTHWDPKNPESLVLAIEDLMREYRCYQKQLIEGY--SRLQFEYSSLQGMEACDDVEVHMG 163

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BLAST of Carg17203-RA vs. Swiss-Prot
Match: sp|Q6SP92|BABA2_MESAU (BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  DP  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSDPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203-RA vs. Swiss-Prot
Match: sp|Q9NXR7|BABA2_HUMAN (BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203-RA vs. Swiss-Prot
Match: sp|Q8WN70|BABA2_SAGOE (BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

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BLAST of Carg17203-RA vs. TrEMBL
Match: tr|A0A1S3CSN0|A0A1S3CSN0_CUCME (BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 2.2e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203-RA vs. TrEMBL
Match: tr|A0A0A0LDL1|A0A0A0LDL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 4.1e-127
Identity = 220/240 (91.67%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPP+IAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSSDTVPPIIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDI+FGPEDENFHPF+SKVDEGEG H+SL NSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIVFGPEDENFHPFSSKVDEGEGDHNSLHNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLP+WIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPTWIDGM 240

[Close]

BLAST of Carg17203-RA vs. TrEMBL
Match: tr|A0A2P5DBV1|A0A2P5DBV1_PARAD (Brain/reproductive organ-expressed protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077460 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.8e-97
Identity = 165/240 (68.75%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS + VPPLIAAQ+NYL NHFPL + IE MWSGS++YPG +DRFTL IPYCL+F++WD++
Sbjct: 1   MSGENVPPLIAAQLNYLINHFPLTVKIEQMWSGSKYYPGTLDRFTLAIPYCLDFLRWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPD++FG EDE F PF     EG G+  S +N   DWNSKDP+RL  L+Q+L
Sbjct: 61  YDAESPFSAPDVIFGVEDERFPPFLLMGGEGGGFLKSPKNCFSDWNSKDPTRLMFLVQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y SYQ +RV  V+D+RLKFE+ T++ REGIEMH+ SG EKPE+VKFAVPL+D++INK
Sbjct: 121 RDQYKSYQNRRVGEVDDDRLKFEISTIIHREGIEMHMISGFEKPEEVKFAVPLMDMDINK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           M+PGCPWRHPQKI+LQV+YPV +KY STP+APRLKL STSELKAL SIED+KLP W+DGM
Sbjct: 181 MVPGCPWRHPQKIYLQVIYPVGKKYVSTPSAPRLKLFSTSELKALFSIEDVKLPVWVDGM 240

[Close]

BLAST of Carg17203-RA vs. TrEMBL
Match: tr|W9RNI6|W9RNI6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 3.2e-95
Identity = 169/240 (70.42%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS + VPPLIAAQ+NYL  HFP  + IE MWSGS+HYPGI+DRFTL IPYCL+F+KWD++
Sbjct: 1   MSGENVPPLIAAQLNYLLTHFPSTVKIEQMWSGSKHYPGILDRFTLAIPYCLDFLKWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YD+ESPFSAPD++FG EDE F  F     EG GY  S +N L DWNSKDP+RL  L+Q+L
Sbjct: 61  YDSESPFSAPDVIFGAEDETFDSFLLTGGEG-GYLKSPKNCLSDWNSKDPTRLMLLVQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y SYQR+RV  V+D+RL FE+ T+LSREGIEMHL SG EKPE+VKFAVPL+D++INK
Sbjct: 121 RDQYMSYQRRRVGEVDDDRLIFEISTILSREGIEMHLISGNEKPEEVKFAVPLMDMDINK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
            IP CPWRHPQKIFLQV+YPV +KYAST +APRLKL+S+SELKAL SIED+KLPSW+DGM
Sbjct: 181 KIPVCPWRHPQKIFLQVIYPVGKKYASTLSAPRLKLISSSELKALFSIEDVKLPSWVDGM 239

[Close]

BLAST of Carg17203-RA vs. TrEMBL
Match: tr|A0A2N9FFD0|A0A2N9FFD0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.7e-94
Identity = 161/240 (67.08%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           M SD VPPLIAAQ+NYL NHFPL + IE MWSGS++ PG++DRFT+VIPYCL+F+KWDI+
Sbjct: 1   MGSDGVPPLIAAQLNYLLNHFPLTVKIEQMWSGSKYNPGVLDRFTIVIPYCLDFIKWDII 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y++E P SAPD++FG +DENF PF ++  EGEG  +S +NSL DWN +DP+RL  L+Q+L
Sbjct: 61  YNSELPMSAPDVIFGADDENFLPFLARNGEGEGNANSPKNSLSDWNGRDPTRLMVLIQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y +YQRKRV+GV+D+RLKFE+ T+  REGIEMHLSSG EKPE+VKFAVPL ++NI+K
Sbjct: 121 RDQYVNYQRKRVDGVDDDRLKFEVSTIAFREGIEMHLSSGAEKPEEVKFAVPLTEMNIDK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           M+PGCPWR   KI+LQV YPV RKY S  +APRLKL+STS+LKA+ SIED KLP W+DGM
Sbjct: 181 MVPGCPWRSSPKIYLQVQYPVGRKYVSASSAPRLKLLSTSDLKAIFSIEDFKLPPWLDGM 240

The following BLAST results are available for this feature:

BLAST of Carg17203-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940533.1	5.1e-137	100.00	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022981789.1	1.5e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima]	[more]
XP_023525358.1	1.5e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_008466484.1	3.3e-128	92.92	PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo]	[more]
XP_004136379.1	6.2e-127	91.67	PREDICTED: BRCA1-A complex subunit BRE [Cucumis sativus] >KGN60040.1 hypothetica...	[more]

BLAST of Carg17203-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42470.1	8.4e-78	54.96	Brain/reproductive organ-expressed protein (InterPro:IPR010358)	[more]

BLAST of Carg17203-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6GPL9\|BABA2_XENLA	3.2e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1	[more]
sp\|B6NXD5\|BABA2_BRAFL	5.5e-10	28.93	BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 P...	[more]
sp\|Q6SP92\|BABA2_MESAU	7.2e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE...	[more]
sp\|Q9NXR7\|BABA2_HUMAN	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2	[more]
sp\|Q8WN70\|BABA2_SAGOE	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV...	[more]

BLAST of Carg17203-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSN0\|A0A1S3CSN0_CUCME	2.2e-128	92.92	BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1	[more]
tr\|A0A0A0LDL1\|A0A0A0LDL1_CUCSA	4.1e-127	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1	[more]
tr\|A0A2P5DBV1\|A0A2P5DBV1_PARAD	5.8e-97	68.75	Brain/reproductive organ-expressed protein OS=Parasponia andersonii OX=3476 GN=P...	[more]
tr\|W9RNI6\|W9RNI6_9ROSA	3.2e-95	70.42	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1	[more]
tr\|A0A2N9FFD0\|A0A2N9FFD0_FAGSY	2.7e-94	67.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0070552	BRISC complex
GO:0070531	BRCA1-A complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010358	BRE

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg17203	Carg17203	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17203-RA.CDS.7	Carg17203-RA.CDS.7	CDS
Carg17203-RA.CDS.6	Carg17203-RA.CDS.6	CDS
Carg17203-RA.CDS.5	Carg17203-RA.CDS.5	CDS
Carg17203-RA.CDS.4	Carg17203-RA.CDS.4	CDS
Carg17203-RA.CDS.3	Carg17203-RA.CDS.3	CDS
Carg17203-RA.CDS.2	Carg17203-RA.CDS.2	CDS
Carg17203-RA.CDS.1	Carg17203-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17203-RA.five_prime_UTR.1	Carg17203-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg17203-RA.exon.7	Carg17203-RA.exon.7	exon
Carg17203-RA.exon.6	Carg17203-RA.exon.6	exon
Carg17203-RA.exon.5	Carg17203-RA.exon.5	exon
Carg17203-RA.exon.4	Carg17203-RA.exon.4	exon
Carg17203-RA.exon.3	Carg17203-RA.exon.3	exon
Carg17203-RA.exon.2	Carg17203-RA.exon.2	exon
Carg17203-RA.exon.1	Carg17203-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg17203-RA	Carg17203-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 27..173 e-value: 1.4E-19 score: 70.0
IPR010358	BRCA1-A complex subunit BRE	PANTHER	PTHR15189	FAMILY NOT NAMED	coord: 4..240