Carg17203 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17203
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BRCA1-A complex subunit BRE
Location	Cucurbita_argyrosperma_scaffold_110 : 402426 .. 404267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGGTAAACAATTCCGCTTACTATCTCTTCCTTGAAAATTCAGGGATAACAAAATCAAATGGCGATTTCTAGTTTATTACATCGATCGGAAATGGATGATATTCGGAGTTCTTTCTTTCTTTTTTCCCTCCATTTTCCCACCCCGATGATAGTATTTACTGTCGCTATAATATGGCGATAGAAAGCGAACGGTTTGTTGAACAGATCACTTATTCTTACTGTTTTGATATTCAGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGTAAGACCTGTTTTCCATTGTTGTTATCATAATATCCTTTCAATTCTTTTCTCTTTCCCTGTAAATGGTTGACAGATTGTTTGATAGCTGTTACCTGTCGTAGGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGTTCTTCAGGGTTTTCCTTTGATTGAGCCTTCTTCTGTTTCTAATGTTTTGGGTATAATTCAGCTTGAATTCAAAGGCAACTTTACTTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGTAACGTTCTTCATTATAGTGTTTATTACACTGTCCTAACTCTGTTTTGATAATCAATTGCATGAGTTTAGGAATTTAAGGGATCGGGTATTGGACTTGGTTTCTTGATAATACATTCTTGCTGGATGCCTGTAGAAATGTATAAAACTTTATAATTTAGTTTTCATGCTTGGAAATTGAATGAGAGAACTGCTGCTAGTTAATTATTCCAGATTTTTCATGCTTGAATTATAGTAGTGTAGAAGTTAAACCATCCCTATAATGTTTTCTTTTTAAATTTTTTTTTTTTTTTGCTTATAACCATGTATTCCTTTAGTTGGGCAAGCTGCTCCTTATACAGATATCTGTGTTCTCTCCTTAAGGTTCTTTTATTTTCAATGGTAACTTAACCAAAACTACCTTTCTGCAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTAGTATTTTAAAGTTTGTGGTTGTACTTTCCTTGAATAGTAAAGAATTGATACTGAGAATTCTATTCTCTCTCTTTATTCTCATATGTGTGGCTTCTATGCCTTTGAATTTTAGCATAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTCCTTTCTGAACTTCTGGTTTTCCTGTTCCTCTATTATTTCCCATTCTCATCATTGTTTATAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

mRNA sequence

AGGTGTTCATTGCTGTTTCAGCTGACTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTTATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Coding sequence (CDS)

ATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATTATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTACGATGCTGAATCGCCATTTTCTGCACCTGATATTATGTTTGGACCAGAAGATGAAAATTTCCATCCTTTCACAAGTAAGGTTGATGAAGGAGAGGGATATCATGATTCCTTACAAAATAGTTTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACGATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCACTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTGTTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAG

Protein sequence

MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM

Homology

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_022940533.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 496.5 bits (1277), Expect = 5.1e-137
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_022981789.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 495.0 bits (1273), Expect = 1.5e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDI+FGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_023525358.1 (BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 495.0 bits (1273), Expect = 1.5e-136
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM
Sbjct: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_008466484.1 (PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo])

HSP 1 Score: 467.2 bits (1201), Expect = 3.3e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. NCBI nr
Match: XP_004136379.1 (PREDICTED: BRCA1-A complex subunit BRE [Cucumis sativus] >KGN60040.1 hypothetical protein Csa_3G872710 [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 6.2e-127
Identity = 220/240 (91.67%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPP+IAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSSDTVPPIIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDI+FGPEDENFHPF+SKVDEGEG H+SL NSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIVFGPEDENFHPFSSKVDEGEGDHNSLHNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLP+WIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPTWIDGM 240

[Close]

BLAST of Carg17203 vs. TAIR10
Match: AT5G42470.1 (Brain/reproductive organ-expressed protein (InterPro:IPR010358))

HSP 1 Score: 287.3 bits (734), Expect = 8.4e-78
Identity = 133/242 (54.96%), Postives = 188/242 (77.69%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           M+ +  PPLIA Q++YL NH P  + I N+WSG++  P I+DRFTLVIPYCLE +KWD++
Sbjct: 1   MAFEEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPF-TSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQE 120
           Y++E     PD +FGP+DE+F P   S +   +    SL+ +L +W+ +D +RL  ++Q 
Sbjct: 61  YNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQG 120

Query: 121 LRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLV-DINI 180
           LRD+Y +YQR+RV  V+D+R+KFE+ T+L+R+GIEM ++SGV+KPE+VKFAVPLV D+NI
Sbjct: 121 LRDQYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVKFAVPLVMDMNI 180

Query: 181 NKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWID 240
           NKM+ GCPW+H QKI+LQV+YP++RKY + P+APRLKLVS  +LK+L S+ED+KL  W+D
Sbjct: 181 NKMVVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFSVEDVKLSPWMD 240

[Close]

BLAST of Carg17203 vs. Swiss-Prot
Match: sp|Q6GPL9|BABA2_XENLA (BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A  P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L +WN  DP  L  +++EL  +Y  YQ  R+   E  RL FE  T+    + G+ M + +
Sbjct: 114 LSEWNPSDPECLLLVVKELVQQYHQYQCSRLS--ESSRLMFEYQTLQEEPQYGLNMEIYA 160

[Close]

BLAST of Carg17203 vs. Swiss-Prot
Match: sp|B6NXD5|BABA2_BRAFL (BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.5e-10
Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF + IP+  + +KW++++D+  P + PD +F  E+ NF P   K++           +
Sbjct: 56  DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDPDIEKLE-----------N 115

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREG---IEMHLS 160
           L  W+ K+P  L   +++L   Y  YQ++ +EG    RL+FE  ++   E    +E+H+ 
Sbjct: 116 LTHWDPKNPESLVLAIEDLMREYRCYQKQLIEGY--SRLQFEYSSLQGMEACDDVEVHMG 163

[Close]

BLAST of Carg17203 vs. Swiss-Prot
Match: sp|Q6SP92|BABA2_MESAU (BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.2e-10
Identity = 44/121 (36.36%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S +           ++
Sbjct: 54  DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPSAL-----------HN 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  DP  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSDPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. Swiss-Prot
Match: sp|Q9NXR7|BABA2_HUMAN (BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. Swiss-Prot
Match: sp|Q8WN70|BABA2_SAGOE (BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 0


Query: 42  DRFTLVIPYCLEFVKWDIMYDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNS 101
           DRF L IPY  E +KWDI+++A+ P   PD +FG ED  F P  S          +LQN 
Sbjct: 54  DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLPDPS----------ALQN- 113

Query: 102 LRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLS--REGIEMHLSS 161
           L  WN  +P  L  +++EL  +Y  +Q  R+   E  RL FE  T+L   + G  M + +
Sbjct: 114 LASWNPSNPECLLLVVKELVQQYHQFQCSRLR--ESSRLMFEYQTLLEEPQYGENMEIYA 160

[Close]

BLAST of Carg17203 vs. TrEMBL
Match: tr|A0A1S3CSN0|A0A1S3CSN0_CUCME (BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 2.2e-128
Identity = 223/240 (92.92%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS+DTVPPLIAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSADTVPPLIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDIMFGPEDENFHPF+SKVDEGEG H+SLQNSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIMFGPEDENFHPFSSKVDEGEGDHNSLQNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLPSWIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240

[Close]

BLAST of Carg17203 vs. TrEMBL
Match: tr|A0A0A0LDL1|A0A0A0LDL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 4.1e-127
Identity = 220/240 (91.67%), Postives = 234/240 (97.50%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MSSDTVPP+IAA INYL NHFPLP+ IE+MWSGSRHYPGI+DRFTLV+PYCLEFVKWDIM
Sbjct: 1   MSSDTVPPIIAAHINYLLNHFPLPVKIEHMWSGSRHYPGIMDRFTLVMPYCLEFVKWDIM 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y+AESPFSAPDI+FGPEDENFHPF+SKVDEGEG H+SL NSLRDWNSKDPSRLTSLLQEL
Sbjct: 61  YNAESPFSAPDIVFGPEDENFHPFSSKVDEGEGDHNSLHNSLRDWNSKDPSRLTSLLQEL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RDRY SYQRKRVEGV+DERLKFELCTMLSREGIEMHLSSGVEKPE+VKFAVPLVDININK
Sbjct: 121 RDRYVSYQRKRVEGVDDERLKFELCTMLSREGIEMHLSSGVEKPEEVKFAVPLVDININK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           MIPGCPWRHPQKIFLQVLYPVVRKYA+TP+APRLKLVSTSELKALLSIEDIKLP+WIDGM
Sbjct: 181 MIPGCPWRHPQKIFLQVLYPVVRKYATTPSAPRLKLVSTSELKALLSIEDIKLPTWIDGM 240

[Close]

BLAST of Carg17203 vs. TrEMBL
Match: tr|A0A2P5DBV1|A0A2P5DBV1_PARAD (Brain/reproductive organ-expressed protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_077460 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.8e-97
Identity = 165/240 (68.75%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS + VPPLIAAQ+NYL NHFPL + IE MWSGS++YPG +DRFTL IPYCL+F++WD++
Sbjct: 1   MSGENVPPLIAAQLNYLINHFPLTVKIEQMWSGSKYYPGTLDRFTLAIPYCLDFLRWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YDAESPFSAPD++FG EDE F PF     EG G+  S +N   DWNSKDP+RL  L+Q+L
Sbjct: 61  YDAESPFSAPDVIFGVEDERFPPFLLMGGEGGGFLKSPKNCFSDWNSKDPTRLMFLVQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y SYQ +RV  V+D+RLKFE+ T++ REGIEMH+ SG EKPE+VKFAVPL+D++INK
Sbjct: 121 RDQYKSYQNRRVGEVDDDRLKFEISTIIHREGIEMHMISGFEKPEEVKFAVPLMDMDINK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           M+PGCPWRHPQKI+LQV+YPV +KY STP+APRLKL STSELKAL SIED+KLP W+DGM
Sbjct: 181 MVPGCPWRHPQKIYLQVIYPVGKKYVSTPSAPRLKLFSTSELKALFSIEDVKLPVWVDGM 240

[Close]

BLAST of Carg17203 vs. TrEMBL
Match: tr|W9RNI6|W9RNI6_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 3.2e-95
Identity = 169/240 (70.42%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           MS + VPPLIAAQ+NYL  HFP  + IE MWSGS+HYPGI+DRFTL IPYCL+F+KWD++
Sbjct: 1   MSGENVPPLIAAQLNYLLTHFPSTVKIEQMWSGSKHYPGILDRFTLAIPYCLDFLKWDVI 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           YD+ESPFSAPD++FG EDE F  F     EG GY  S +N L DWNSKDP+RL  L+Q+L
Sbjct: 61  YDSESPFSAPDVIFGAEDETFDSFLLTGGEG-GYLKSPKNCLSDWNSKDPTRLMLLVQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y SYQR+RV  V+D+RL FE+ T+LSREGIEMHL SG EKPE+VKFAVPL+D++INK
Sbjct: 121 RDQYMSYQRRRVGEVDDDRLIFEISTILSREGIEMHLISGNEKPEEVKFAVPLMDMDINK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
            IP CPWRHPQKIFLQV+YPV +KYAST +APRLKL+S+SELKAL SIED+KLPSW+DGM
Sbjct: 181 KIPVCPWRHPQKIFLQVIYPVGKKYASTLSAPRLKLISSSELKALFSIEDVKLPSWVDGM 239

[Close]

BLAST of Carg17203 vs. TrEMBL
Match: tr|A0A2N9FFD0|A0A2N9FFD0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.7e-94
Identity = 161/240 (67.08%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIM 60
           M SD VPPLIAAQ+NYL NHFPL + IE MWSGS++ PG++DRFT+VIPYCL+F+KWDI+
Sbjct: 1   MGSDGVPPLIAAQLNYLLNHFPLTVKIEQMWSGSKYNPGVLDRFTIVIPYCLDFIKWDII 60

Query: 61  YDAESPFSAPDIMFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQEL 120
           Y++E P SAPD++FG +DENF PF ++  EGEG  +S +NSL DWN +DP+RL  L+Q+L
Sbjct: 61  YNSELPMSAPDVIFGADDENFLPFLARNGEGEGNANSPKNSLSDWNGRDPTRLMVLIQQL 120

Query: 121 RDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININK 180
           RD+Y +YQRKRV+GV+D+RLKFE+ T+  REGIEMHLSSG EKPE+VKFAVPL ++NI+K
Sbjct: 121 RDQYVNYQRKRVDGVDDDRLKFEVSTIAFREGIEMHLSSGAEKPEEVKFAVPLTEMNIDK 180

Query: 181 MIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGM 240
           M+PGCPWR   KI+LQV YPV RKY S  +APRLKL+STS+LKA+ SIED KLP W+DGM
Sbjct: 181 MVPGCPWRSSPKIYLQVQYPVGRKYVSASSAPRLKLLSTSDLKAIFSIEDFKLPPWLDGM 240

The following BLAST results are available for this feature:

BLAST of Carg17203 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940533.1	5.1e-137	100.00	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita moschata]	[more]
XP_022981789.1	1.5e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita maxima]	[more]
XP_023525358.1	1.5e-136	99.58	BRISC and BRCA1-A complex member 2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_008466484.1	3.3e-128	92.92	PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo]	[more]
XP_004136379.1	6.2e-127	91.67	PREDICTED: BRCA1-A complex subunit BRE [Cucumis sativus] >KGN60040.1 hypothetica...	[more]

BLAST of Carg17203 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42470.1	8.4e-78	54.96	Brain/reproductive organ-expressed protein (InterPro:IPR010358)	[more]

BLAST of Carg17203 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6GPL9\|BABA2_XENLA	3.2e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Xenopus laevis OX=8355 GN=babam2 PE=2 SV=1	[more]
sp\|B6NXD5\|BABA2_BRAFL	5.5e-10	28.93	BRISC and BRCA1-A complex member 2 OS=Branchiostoma floridae OX=7739 GN=BABAM2 P...	[more]
sp\|Q6SP92\|BABA2_MESAU	7.2e-10	36.36	BRISC and BRCA1-A complex member 2 OS=Mesocricetus auratus OX=10036 GN=Babam2 PE...	[more]
sp\|Q9NXR7\|BABA2_HUMAN	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Homo sapiens OX=9606 GN=BABAM2 PE=1 SV=2	[more]
sp\|Q8WN70\|BABA2_SAGOE	1.6e-09	38.02	BRISC and BRCA1-A complex member 2 OS=Saguinus oedipus OX=9490 GN=BABAM2 PE=2 SV...	[more]

BLAST of Carg17203 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CSN0\|A0A1S3CSN0_CUCME	2.2e-128	92.92	BRCA1-A complex subunit BRE OS=Cucumis melo OX=3656 GN=LOC103503876 PE=4 SV=1	[more]
tr\|A0A0A0LDL1\|A0A0A0LDL1_CUCSA	4.1e-127	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872710 PE=4 SV=1	[more]
tr\|A0A2P5DBV1\|A0A2P5DBV1_PARAD	5.8e-97	68.75	Brain/reproductive organ-expressed protein OS=Parasponia andersonii OX=3476 GN=P...	[more]
tr\|W9RNI6\|W9RNI6_9ROSA	3.2e-95	70.42	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016058 PE=4 SV=1	[more]
tr\|A0A2N9FFD0\|A0A2N9FFD0_FAGSY	2.7e-94	67.08	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17448 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0070552	BRISC complex
GO:0070531	BRCA1-A complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010358	BRE

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0070531	BRCA1-A complex
cellular_component	GO:0070552	BRISC complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17203-RA	Carg17203-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010358	BRCA1-A complex subunit BRE	PFAM	PF06113	BRE	coord: 27..173 e-value: 1.4E-19 score: 70.0
IPR010358	BRCA1-A complex subunit BRE	PANTHER	PTHR15189	FAMILY NOT NAMED	coord: 4..240

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17203	Carg08675	Silver-seed gourd	carcarB125

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17203	Silver-seed gourd	carcarB167
Carg17203	Silver-seed gourd	carcarB647
Carg17203	Cucumber (Gy14) v2	carcgybB0933
Carg17203	Cucumber (Gy14) v2	carcgybB0934
Carg17203	Cucumber (Gy14) v1	carcgyB1064
Carg17203	Cucumber (Gy14) v1	carcgyB1066
Carg17203	Cucurbita maxima (Rimu)	carcmaB1291
Carg17203	Cucurbita maxima (Rimu)	carcmaB1292
Carg17203	Cucurbita maxima (Rimu)	carcmaB1293
Carg17203	Cucurbita maxima (Rimu)	carcmaB1294
Carg17203	Cucurbita moschata (Rifu)	carcmoB1261
Carg17203	Cucurbita moschata (Rifu)	carcmoB1263
Carg17203	Cucurbita moschata (Rifu)	carcmoB1265
Carg17203	Cucurbita pepo (Zucchini)	carcpeB1307
Carg17203	Cucurbita pepo (Zucchini)	carcpeB1309
Carg17203	Cucurbita pepo (Zucchini)	carcpeB1310
Carg17203	Cucurbita pepo (Zucchini)	carcpeB1311
Carg17203	Wild cucumber (PI 183967)	carcpiB0983
Carg17203	Wild cucumber (PI 183967)	carcpiB0984
Carg17203	Cucumber (Chinese Long) v2	carcuB0960
Carg17203	Cucumber (Chinese Long) v2	carcuB0961
Carg17203	Cucumber (Chinese Long) v3	carcucB0988
Carg17203	Cucumber (Chinese Long) v3	carcucB0989
Carg17203	Bottle gourd (USVL1VR-Ls)	carlsiB864
Carg17203	Bottle gourd (USVL1VR-Ls)	carlsiB863
Carg17203	Melon (DHL92) v3.5.1	carmeB0927
Carg17203	Melon (DHL92) v3.5.1	carmeB0928
Carg17203	Melon (DHL92) v3.6.1	carmedB0933
Carg17203	Melon (DHL92) v3.6.1	carmedB0934
Carg17203	Watermelon (Charleston Gray)	carwcgB0920
Carg17203	Watermelon (Charleston Gray)	carwcgB0922
Carg17203	Watermelon (97103) v1	carwmB0944
Carg17203	Watermelon (97103) v1	carwmB0945
Carg17203	Watermelon (97103) v2	carwmbB0994
Carg17203	Watermelon (97103) v2	carwmbB0996
Carg17203	Wax gourd	carwgoB1097
Carg17203	Wax gourd	carwgoB1092