Carg16431-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16431-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Upf0057 membrane protein
Location	Cucurbita_argyrosperma_scaffold_130 : 423948 .. 424359 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTAATCTTAATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGTCTCTCTCTGTAATTTCCTCCGCTAATCTGAACTTACGATGACCTAAAACAGCCGACGAGACGATCTGATCTAAAACAGACGAAATTAGGTTTCAGTTTCGGTCTAATTTTGTGTGTAATTGCAGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG

mRNA sequence

ATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG

Coding sequence (CDS)

ATGGCGAACGGATGTGAGATCTTCTGCGAAATTCTCATCGCCATTCTTATTCCTCCTCTCGGAGTCTGCCTCAAACACGGCTGTTGCACGGTGGAATTTTGTCTCTGTTTGATTTTGACTCTGCTCGGTTACATTCCGGGGATCATATACGCTCTCTACTCCATCGTGTTTGTCGATCGCGATCATTTCTTCGACGAGTACAGGCGTCCGCTCTATTCGCCGGTGCCGACGGTGTAG

Protein sequence

MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDRDHFFDEYRRPLYSPVPTV

Homology

[Close]

BLAST of Carg16431-RA vs. NCBI nr
Match: XP_022938010.1 (UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF0057 membrane protein At4g30660-like [Cucurbita moschata])

HSP 1 Score: 165.2 bits (417), Expect = 8.7e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR
Sbjct: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          DHFFDEYRRPLYSPVPTV
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Carg16431-RA vs. NCBI nr
Match: XP_022969587.1 (UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_022969588.1 UPF0057 membrane protein At4g30660-like [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 7.3e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MAN CEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR
Sbjct: 1  MANRCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          DHFFDEYRRPLYSPVPTV
Sbjct: 61 DHFFDEYRRPLYSPVPTV 78

[Close]

BLAST of Carg16431-RA vs. NCBI nr
Match: XP_022158160.1 (UPF0057 membrane protein At2g24040-like [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-33
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGY+PGIIYALY+IVFVDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYVPGIIYALYAIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          D FFDEYRRPLY+PV  V
Sbjct: 61 DQFFDEYRRPLYAPVSAV 78

[Close]

BLAST of Carg16431-RA vs. NCBI nr
Match: XP_022946545.1 (UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF0057 membrane protein At2g24040-like [Cucurbita maxima] >XP_023523032.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo] >XP_023546587.1 UPF0057 membrane protein At2g24040-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLYSPVPTV 79
          D FFDEYRRPLYS    V
Sbjct: 61 DQFFDEYRRPLYSQASAV 78

[Close]

BLAST of Carg16431-RA vs. NCBI nr
Match: XP_011648896.1 (PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN61055.1 hypothetical protein Csa_2G036040 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 3.0e-30
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M NGCEI CEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+Y+I FVDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DHFFDEYRRPLYSPV 76
          D FFDEYRRPLYS V
Sbjct: 61 DQFFDEYRRPLYSSV 75

[Close]

BLAST of Carg16431-RA vs. TAIR10
Match: AT4G28088.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 134.4 bits (337), Expect = 3.0e-32
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MANGCEI CEI+IAILIPPLGVCL+HGCCT EF +CLILTLLGY+PGIIYALY+IV+VDR
Sbjct: 1  MANGCEICCEIMIAILIPPLGVCLRHGCCTTEFMICLILTLLGYVPGIIYALYAIVYVDR 60

Query: 61 DHFFDEYRRPLY 73
          D FFDEYRRPL+
Sbjct: 61 DQFFDEYRRPLF 72

[Close]

BLAST of Carg16431-RA vs. TAIR10
Match: AT2G24040.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-28
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Carg16431-RA vs. TAIR10
Match: AT4G30660.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Carg16431-RA vs. TAIR10
Match: AT4G30650.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-22
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of Carg16431-RA vs. TAIR10
Match: AT2G38905.1 (Low temperature and salt responsive protein family)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-12
Identity = 34/53 (64.15%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 4  GCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIV 57
          G E F EI++AIL+PP+GV L++G C VEF +CL+LT+LGYIPGIIYA+Y +V
Sbjct: 2  GSETFLEIILAILLPPVGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 53

[Close]

BLAST of Carg16431-RA vs. Swiss-Prot
Match: sp|O82232|RC22_ARATH (UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-26
Identity = 52/72 (72.22%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+ CE+ CEI IAIL+PP+GVCL+HGCCTVEF +CLILT LGY+PGIIYA+Y+I F+ R
Sbjct: 1  MASSCELCCEIFIAILLPPVGVCLRHGCCTVEFFICLILTCLGYLPGIIYAIYAICFLHR 60

Query: 61 DHFFDEYRRPLY 73
          D +FDEYRRP+Y
Sbjct: 61 DEYFDEYRRPIY 72

[Close]

BLAST of Carg16431-RA vs. Swiss-Prot
Match: sp|Q9SUI0|RC24_ARATH (UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 6.8e-26
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEI CEI+IAIL+PPLGVC + GCCTVEF +CL+LT+LGY+PGIIYA+Y IVF  R
Sbjct: 1  MPSNCEILCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIVFQHR 60

Query: 61 DHFFDEYRRPLYS 74
          + +FDEYRRP+YS
Sbjct: 61 EEYFDEYRRPIYS 73

[Close]

BLAST of Carg16431-RA vs. Swiss-Prot
Match: sp|Q9M095|RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-21
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MA+  E+FCEILIAIL+PPLGVCLK GCCTVEF +CL+LT+LGYIPGIIYALY IVF +R
Sbjct: 1  MASNMEVFCEILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVIVFQNR 60

Query: 61 D 62
          +
Sbjct: 61 E 61

[Close]

BLAST of Carg16431-RA vs. Swiss-Prot
Match: sp|Q9LRI7|OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-17
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MANG-CEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVD 60
          MA+G C  F EIL+AI++PPLGV L+ GCC++EFC+CL+LT+LGY+PGIIYA+Y +V +D
Sbjct: 1  MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVLVALD 60

Query: 61 RDHFFDEY 68
           D +  EY
Sbjct: 61 SDQYQREY 68

[Close]

BLAST of Carg16431-RA vs. Swiss-Prot
Match: sp|Q9ZNQ7|RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-10
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 0


Query: 8  FCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALY 54
          F +I+IAIL+PPLGV L+ G C VEF +CL+LTLLGYIPGIIYA+Y
Sbjct: 6  FVDIIIAILLPPLGVFLRFG-CGVEFWICLVLTLLGYIPGIIYAIY 50

[Close]

BLAST of Carg16431-RA vs. TrEMBL
Match: tr|A0A0A0LGN1|A0A0A0LGN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036040 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M NGCEI CEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+Y+I FVDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DHFFDEYRRPLYSPV 76
          D FFDEYRRPLYS V
Sbjct: 61 DQFFDEYRRPLYSSV 75

[Close]

BLAST of Carg16431-RA vs. TrEMBL
Match: tr|A0A1S3BTY7|A0A1S3BTY7_CUCME (UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-30
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M NGCEI CEILIAILIPPLGVCLK GCCTVEFCLCLILTLLGY+PGIIYA+Y+I FVDR
Sbjct: 1  MVNGCEICCEILIAILIPPLGVCLKFGCCTVEFCLCLILTLLGYVPGIIYAVYAIAFVDR 60

Query: 61 DHFFDEYRRPLYS 74
          D FFDEYRRPLYS
Sbjct: 61 DQFFDEYRRPLYS 73

[Close]

BLAST of Carg16431-RA vs. TrEMBL
Match: tr|A0A1S3B9R0|A0A1S3B9R0_CUCME (UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103487341 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-30
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M + CEIFCEILIAILIPPLGVCL+HGCCTVEFC+CL+LT LGY+PGIIYALY+IVF+DR
Sbjct: 1  MPSRCEIFCEILIAILIPPLGVCLRHGCCTVEFCICLLLTFLGYVPGIIYALYAIVFIDR 60

Query: 61 DHFFDEYRRPLYSP 75
          D +FDEYRRPLY+P
Sbjct: 61 DEYFDEYRRPLYAP 74

[Close]

BLAST of Carg16431-RA vs. TrEMBL
Match: tr|A0A2N9FWW4|A0A2N9FWW4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19620 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.5e-30
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          MAN CEIFCEILIAIL+PPLGVCL+HGCC+VEF LCL+LT+LGYIPGIIYALY+IVFVDR
Sbjct: 1  MANRCEIFCEILIAILLPPLGVCLRHGCCSVEFWLCLLLTILGYIPGIIYALYAIVFVDR 60

Query: 61 DHFFDEYRRPLYSP 75
          D +FDEYRRPLY+P
Sbjct: 61 DQYFDEYRRPLYAP 74

[Close]

BLAST of Carg16431-RA vs. TrEMBL
Match: tr|A0A2H5P874|A0A2H5P874_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_112610 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 59/76 (77.63%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 1  MANGCEIFCEILIAILIPPLGVCLKHGCCTVEFCLCLILTLLGYIPGIIYALYSIVFVDR 60
          M   CEIFCEILIA+L+PP+GVCL+HGCC+VEFC+CL+LT+LGY+PGIIYALY+IVFVDR
Sbjct: 1  MPTRCEIFCEILIAVLLPPVGVCLRHGCCSVEFCICLLLTILGYVPGIIYALYAIVFVDR 60

Query: 61 DHFFDEYRRPLYSPVP 77
          D +FDEYRRPLY+P P
Sbjct: 61 DEYFDEYRRPLYAPGP 76

The following BLAST results are available for this feature:

BLAST of Carg16431-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938010.1	8.7e-38	100.00	UPF0057 membrane protein At4g30660-like [Cucurbita moschata] >XP_022938011.1 UPF...	[more]
XP_022969587.1	7.3e-37	98.72	UPF0057 membrane protein At4g30660-like [Cucurbita maxima] >XP_022969588.1 UPF00...	[more]
XP_022158160.1	1.3e-33	91.03	UPF0057 membrane protein At2g24040-like [Momordica charantia]	[more]
XP_022946545.1	2.4e-32	89.74	UPF0057 membrane protein At2g24040-like [Cucurbita moschata] >XP_022999789.1 UPF...	[more]
XP_011648896.1	3.0e-30	88.00	PREDICTED: UPF0057 membrane protein At4g30660-like [Cucumis sativus] >KGN61055.1...	[more]

BLAST of Carg16431-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28088.1	3.0e-32	84.72	Low temperature and salt responsive protein family	[more]
AT2G24040.1	7.6e-28	72.22	Low temperature and salt responsive protein family	[more]
AT4G30660.1	3.8e-27	69.86	Low temperature and salt responsive protein family	[more]
AT4G30650.1	2.8e-22	77.05	Low temperature and salt responsive protein family	[more]
AT2G38905.1	1.5e-12	64.15	Low temperature and salt responsive protein family	[more]

BLAST of Carg16431-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82232\|RC22_ARATH	1.4e-26	72.22	UPF0057 membrane protein At2g24040 OS=Arabidopsis thaliana OX=3702 GN=At2g24040 ...	[more]
sp\|Q9SUI0\|RC24_ARATH	6.8e-26	69.86	UPF0057 membrane protein At4g30660 OS=Arabidopsis thaliana OX=3702 GN=At4g30660 ...	[more]
sp\|Q9M095\|RC23_ARATH	5.0e-21	77.05	UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana OX=3702 GN=At4g30650 ...	[more]
sp\|Q9LRI7\|OSR8_ORYSJ	5.8e-17	60.29	Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSR8 PE=3 S...	[more]
sp\|Q9ZNQ7\|RCI2A_ARATH	5.2e-10	71.74	Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1	[more]

BLAST of Carg16431-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LGN1\|A0A0A0LGN1_CUCSA	2.0e-30	88.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036040 PE=4 SV=1	[more]
tr\|A0A1S3BTY7\|A0A1S3BTY7_CUCME	4.4e-30	89.04	UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103493660 PE=4 ...	[more]
tr\|A0A1S3B9R0\|A0A1S3B9R0_CUCME	5.7e-30	82.43	UPF0057 membrane protein At4g30660 OS=Cucumis melo OX=3656 GN=LOC103487341 PE=4 ...	[more]
tr\|A0A2N9FWW4\|A0A2N9FWW4_FAGSY	7.5e-30	85.14	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19620 PE=4 SV=1	[more]
tr\|A0A2H5P874\|A0A2H5P874_CITUN	1.7e-29	77.63	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_112610 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR000612	PMP3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16431	Carg16431	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16431-RA.CDS.2	Carg16431-RA.CDS.2	CDS
Carg16431-RA.CDS.1	Carg16431-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16431-RA.exon.2	Carg16431-RA.exon.2	exon
Carg16431-RA.exon.1	Carg16431-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16431-RA	Carg16431-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PFAM	PF01679	Pmp3	coord: 9..56 e-value: 8.9E-17 score: 60.9
IPR000612	Proteolipid membrane potential modulator	PANTHER	PTHR21659	HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED	coord: 1..72
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 12..27
None	No IPR available	PANTHER	PTHR21659:SF34	LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN	coord: 1..72