Carg16290-RA (mRNA) Silver-seed gourd

NameCarg16290-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionconserved peptide upstream open reading frame 25
LocationCucurbita_argyrosperma_scaffold_077 : 552232 .. 553539 (+)
Sequence length264
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGGTGGGTCTGGCCGTAGAGAATACGAACTCCGGATGTATAAAAGGGTTTCGGTGTGGGTCATTATGGAAAATTAGGGATCATTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTTTTTTCTTCTTTTTGTGTATTTGGGAATCCGTCTGGTTTTCTTTGTGGCTTTGAGAAGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCGTTCTTGGAGGCGGAGGTTATGCTTCTTCATTTTTCGGTACCGATTCATTCCGATTTCTCTTTGATTTTGTGAATATATCTATCTAGGTCAAATTTCCCCCCCCTATATGTTTGGTGTATGGTGTTTTTCGATTGACGGATTGATTGATCGGATTTAGTGTGGGATTTCTAGGTTTCTTCGTTGTCACTCGTTTTAATTTGGTTATCTGTTTATGGTTGATTCGACGACGGAATCTTGTGCGGTTTTTATGTTTGGTCATTGATCGAAGAAATTCTAATTTGTTAGCAGTTTGTGGCGGGGTGCTGTTTGTTTCATTTGCCTTTCGTGAATTGGAAGTTTGTCTGAGTGGTCGGTTGGTGAATTAGGGTTTCGTCTTGATTCAATGCCGGAAATCTTGTGAGATTCTTTTTGCTCACTAATCGCGAAGAATCTCGTTTGTTTGGACTTTTAGCGCGTAACTGCTGCTTCGCTTGCTTATTTTTTGTGAGCAGGATTTTTTGTCGACTGGTCGGTTGGTGAATTGTTGTTTTGTATTGATGAACGCGAGATGCCTATTGTCTTACATTGGTTCTTTTTTGGGATTTTCCTTGAGCCTTTTGCGCTTACGAAATTTTTCTTCTCTAATAATTTTTGCCTCTTGATACGATTGTTGCAATAATATGTATGTTCTGATCAAATTTGGGCTGTTTATGGTCTTTAGCATATGATAAATTGCAGCCCGGTGGTTTATAACATGCCACATCTTGATAAAATCTACTGACCTGTACTCTCGTTATCATTCATGAATATTTATTCTAACTCTTTGATGTTGTTGTAAAGTATCAGATATTTGAGGGCTTGGATATAAAGGGCTTTTTATATTTTCTCAAGATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

mRNA sequence

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Coding sequence (CDS)

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Protein sequence

MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT
BLAST of Carg16290-RA vs. NCBI nr
Match: XP_011650312.1 (PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          MELAS WTNSF+H+VCSFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MELASIWTNSFQHRVCSFQEVLDWRFLILGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_008448598.1 (PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_011028056.1 (PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME A FW+N F+H+V SFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MEKACFWSNCFQHRVFSFQEVLDWRFLILGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_008350439.1 (PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432.1 PREDICTED: uncharacterized protein LOC103436776 [Malus domestica] >XP_017185825.1 PREDICTED: uncharacterized protein LOC103428160 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W+N  +++V SFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEQMRLWSNCHQYRVFSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_017973334.1 (PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335.1 PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  +V SFQEVLDWRFLV GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRVFSFQEVLDWRFLVHGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. TAIR10
Match: AT4G19112.1 (conserved peptide upstream open reading frame 25)

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-08
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W + + +++ SFQE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQVFVWPSCYHYRLFSFQEALDWRFLVRSDFLVGSFVNCT 41

BLAST of Carg16290-RA vs. TAIR10
Match: AT5G45428.1 (conserved peptide upstream open reading frame 24)

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME     +  ++++V S QE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQDYICSGCYQYRVFSLQEALDWRFLVHSDFLIGSFVNCT 41

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1S3BKY3|A0A1S3BKY3_CUCME (uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1S3VQZ5|A0A1S3VQZ5_VIGRR (uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777653 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FWTN ++++  +FQEVLDWRF +LGDFL VSFVNCT
Sbjct: 1  MEGVCFWTNCYQYRFFAFQEVLDWRFFILGDFLRVSFVNCT 41

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A0D2PZL6|A0A0D2PZL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 38 EALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          E     +++ME   FW+N +  +V  FQEVLDWRFL  GDFLLVSFVNCT
Sbjct: 10 ERAKERANNMEQVCFWSNCYLFRVFFFQEVLDWRFLARGDFLLVSFVNCT 59

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1U8MUE2|A0A1U8MUE2_GOSHI (uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC107941384 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A0D2QN48|A0A0D2QN48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 57 MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011650312.11.7e-1390.24PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus][more]
XP_008448598.12.8e-1392.68PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo][more]
XP_011028056.11.3e-1080.49PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica][more]
XP_008350439.16.1e-0873.17PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432.... [more]
XP_017973334.11.0e-0773.17PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335.... [more]
Match NameE-valueIdentityDescription
AT4G19112.19.7e-0856.10conserved peptide upstream open reading frame 25[more]
AT5G45428.15.3e-0653.66conserved peptide upstream open reading frame 24[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3BKY3|A0A1S3BKY3_CUCME1.9e-1392.68uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=... [more]
tr|A0A1S3VQZ5|A0A1S3VQZ5_VIGRR2.0e-0765.85uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
tr|A0A0D2PZL6|A0A0D2PZL6_GOSRA2.0e-0758.00Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 ... [more]
tr|A0A1U8MUE2|A0A1U8MUE2_GOSHI3.4e-0765.85uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC1079413... [more]
tr|A0A0D2QN48|A0A0D2QN48_GOSRA3.4e-0765.85Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 ... [more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg16290Carg16290gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg16290-RACarg16290-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16290-RA.exon.1Carg16290-RA.exon.1exon
Carg16290-RA.exon.2Carg16290-RA.exon.2exon
Carg16290-RA.exon.3Carg16290-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg16290-RA.CDS.1Carg16290-RA.CDS.1CDS
Carg16290-RA.CDS.2Carg16290-RA.CDS.2CDS
Carg16290-RA.CDS.3Carg16290-RA.CDS.3CDS