Carg16290-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16290-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	conserved peptide upstream open reading frame 25
Location	Cucurbita_argyrosperma_scaffold_077 : 552232 .. 553539 (+)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGGTGGGTCTGGCCGTAGAGAATACGAACTCCGGATGTATAAAAGGGTTTCGGTGTGGGTCATTATGGAAAATTAGGGATCATTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTTTTTTCTTCTTTTTGTGTATTTGGGAATCCGTCTGGTTTTCTTTGTGGCTTTGAGAAGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCGTTCTTGGAGGCGGAGGTTATGCTTCTTCATTTTTCGGTACCGATTCATTCCGATTTCTCTTTGATTTTGTGAATATATCTATCTAGGTCAAATTTCCCCCCCCTATATGTTTGGTGTATGGTGTTTTTCGATTGACGGATTGATTGATCGGATTTAGTGTGGGATTTCTAGGTTTCTTCGTTGTCACTCGTTTTAATTTGGTTATCTGTTTATGGTTGATTCGACGACGGAATCTTGTGCGGTTTTTATGTTTGGTCATTGATCGAAGAAATTCTAATTTGTTAGCAGTTTGTGGCGGGGTGCTGTTTGTTTCATTTGCCTTTCGTGAATTGGAAGTTTGTCTGAGTGGTCGGTTGGTGAATTAGGGTTTCGTCTTGATTCAATGCCGGAAATCTTGTGAGATTCTTTTTGCTCACTAATCGCGAAGAATCTCGTTTGTTTGGACTTTTAGCGCGTAACTGCTGCTTCGCTTGCTTATTTTTTGTGAGCAGGATTTTTTGTCGACTGGTCGGTTGGTGAATTGTTGTTTTGTATTGATGAACGCGAGATGCCTATTGTCTTACATTGGTTCTTTTTTGGGATTTTCCTTGAGCCTTTTGCGCTTACGAAATTTTTCTTCTCTAATAATTTTTGCCTCTTGATACGATTGTTGCAATAATATGTATGTTCTGATCAAATTTGGGCTGTTTATGGTCTTTAGCATATGATAAATTGCAGCCCGGTGGTTTATAACATGCCACATCTTGATAAAATCTACTGACCTGTACTCTCGTTATCATTCATGAATATTTATTCTAACTCTTTGATGTTGTTGTAAAGTATCAGATATTTGAGGGCTTGGATATAAAGGGCTTTTTATATTTTCTCAAGATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

mRNA sequence

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Coding sequence (CDS)

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Protein sequence

MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT

Homology

[Close]

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_011650312.1 (PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          MELAS WTNSF+H+VCSFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MELASIWTNSFQHRVCSFQEVLDWRFLILGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_008448598.1 (PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_011028056.1 (PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME A FW+N F+H+V SFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MEKACFWSNCFQHRVFSFQEVLDWRFLILGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_008350439.1 (PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432.1 PREDICTED: uncharacterized protein LOC103436776 [Malus domestica] >XP_017185825.1 PREDICTED: uncharacterized protein LOC103428160 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W+N  +++V SFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEQMRLWSNCHQYRVFSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. NCBI nr
Match: XP_017973334.1 (PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335.1 PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  +V SFQEVLDWRFLV GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRVFSFQEVLDWRFLVHGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TAIR10
Match: AT4G19112.1 (conserved peptide upstream open reading frame 25)

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-08
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W + + +++ SFQE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQVFVWPSCYHYRLFSFQEALDWRFLVRSDFLVGSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TAIR10
Match: AT5G45428.1 (conserved peptide upstream open reading frame 24)

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME     +  ++++V S QE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQDYICSGCYQYRVFSLQEALDWRFLVHSDFLIGSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1S3BKY3|A0A1S3BKY3_CUCME (uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1S3VQZ5|A0A1S3VQZ5_VIGRR (uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777653 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FWTN ++++  +FQEVLDWRF +LGDFL VSFVNCT
Sbjct: 1  MEGVCFWTNCYQYRFFAFQEVLDWRFFILGDFLRVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A0D2PZL6|A0A0D2PZL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 38 EALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          E     +++ME   FW+N +  +V  FQEVLDWRFL  GDFLLVSFVNCT
Sbjct: 10 ERAKERANNMEQVCFWSNCYLFRVFFFQEVLDWRFLARGDFLLVSFVNCT 59

[Close]

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A1U8MUE2|A0A1U8MUE2_GOSHI (uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC107941384 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290-RA vs. TrEMBL
Match: tr|A0A0D2QN48|A0A0D2QN48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 57 MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 97

The following BLAST results are available for this feature:

BLAST of Carg16290-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650312.1	1.7e-13	90.24	PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus]	[more]
XP_008448598.1	2.8e-13	92.68	PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo]	[more]
XP_011028056.1	1.3e-10	80.49	PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica]	[more]
XP_008350439.1	6.1e-08	73.17	PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432....	[more]
XP_017973334.1	1.0e-07	73.17	PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335....	[more]

BLAST of Carg16290-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19112.1	9.7e-08	56.10	conserved peptide upstream open reading frame 25	[more]
AT5G45428.1	5.3e-06	53.66	conserved peptide upstream open reading frame 24	[more]

BLAST of Carg16290-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16290-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY3\|A0A1S3BKY3_CUCME	1.9e-13	92.68	uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=...	[more]
tr\|A0A1S3VQZ5\|A0A1S3VQZ5_VIGRR	2.0e-07	65.85	uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|A0A0D2PZL6\|A0A0D2PZL6_GOSRA	2.0e-07	58.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 ...	[more]
tr\|A0A1U8MUE2\|A0A1U8MUE2_GOSHI	3.4e-07	65.85	uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC1079413...	[more]
tr\|A0A0D2QN48\|A0A0D2QN48_GOSRA	3.4e-07	65.85	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 ...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16290	Carg16290	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16290-RA	Carg16290-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16290-RA.exon.1	Carg16290-RA.exon.1	exon
Carg16290-RA.exon.2	Carg16290-RA.exon.2	exon
Carg16290-RA.exon.3	Carg16290-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16290-RA.CDS.1	Carg16290-RA.CDS.1	CDS
Carg16290-RA.CDS.2	Carg16290-RA.CDS.2	CDS
Carg16290-RA.CDS.3	Carg16290-RA.CDS.3	CDS