Carg16290 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16290
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	conserved peptide upstream open reading frame 25
Location	Cucurbita_argyrosperma_scaffold_077 : 552232 .. 553539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGGTGGGTCTGGCCGTAGAGAATACGAACTCCGGATGTATAAAAGGGTTTCGGTGTGGGTCATTATGGAAAATTAGGGATCATTACCTTGGTTGGCACGCAGCAAAGATCTCGTGTTTTTTTCTTCTTTTTGTGTATTTGGGAATCCGTCTGGTTTTCTTTGTGGCTTTGAGAAGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCGTTCTTGGAGGCGGAGGTTATGCTTCTTCATTTTTCGGTACCGATTCATTCCGATTTCTCTTTGATTTTGTGAATATATCTATCTAGGTCAAATTTCCCCCCCCTATATGTTTGGTGTATGGTGTTTTTCGATTGACGGATTGATTGATCGGATTTAGTGTGGGATTTCTAGGTTTCTTCGTTGTCACTCGTTTTAATTTGGTTATCTGTTTATGGTTGATTCGACGACGGAATCTTGTGCGGTTTTTATGTTTGGTCATTGATCGAAGAAATTCTAATTTGTTAGCAGTTTGTGGCGGGGTGCTGTTTGTTTCATTTGCCTTTCGTGAATTGGAAGTTTGTCTGAGTGGTCGGTTGGTGAATTAGGGTTTCGTCTTGATTCAATGCCGGAAATCTTGTGAGATTCTTTTTGCTCACTAATCGCGAAGAATCTCGTTTGTTTGGACTTTTAGCGCGTAACTGCTGCTTCGCTTGCTTATTTTTTGTGAGCAGGATTTTTTGTCGACTGGTCGGTTGGTGAATTGTTGTTTTGTATTGATGAACGCGAGATGCCTATTGTCTTACATTGGTTCTTTTTTGGGATTTTCCTTGAGCCTTTTGCGCTTACGAAATTTTTCTTCTCTAATAATTTTTGCCTCTTGATACGATTGTTGCAATAATATGTATGTTCTGATCAAATTTGGGCTGTTTATGGTCTTTAGCATATGATAAATTGCAGCCCGGTGGTTTATAACATGCCACATCTTGATAAAATCTACTGACCTGTACTCTCGTTATCATTCATGAATATTTATTCTAACTCTTTGATGTTGTTGTAAAGTATCAGATATTTGAGGGCTTGGATATAAAGGGCTTTTTATATTTTCTCAAGATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

mRNA sequence

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Coding sequence (CDS)

ATGGCGAAAGGGCACTGGATAGCTGGCAAGTGGCACCAACCAGCTGATCATTGGGTCGAAATCCGAGAGCAGATTAGAAACCGATTTGCGGGAAGAAGAAGAGCGTTTAGGGAAGCTCTGGATCCCAATTCCTCCCATATGGAGCTTGCTTCTTTTTGGACAAATTCCTTCCGGCATCAAGTTTGTTCTTTCCAGGAAGTGCTTGACTGGCGTTTCCTTGTTCTTGGAGATTTTCTTTTGGTTTCCTTTGTCAATTGCACTTAG

Protein sequence

MAKGHWIAGKWHQPADHWVEIREQIRNRFAGRRRAFREALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT

Homology

[Close]

BLAST of Carg16290 vs. NCBI nr
Match: XP_011650312.1 (PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          MELAS WTNSF+H+VCSFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MELASIWTNSFQHRVCSFQEVLDWRFLILGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. NCBI nr
Match: XP_008448598.1 (PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. NCBI nr
Match: XP_011028056.1 (PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica])

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME A FW+N F+H+V SFQEVLDWRFL+LGDFLLVSFVNCT
Sbjct: 1  MEKACFWSNCFQHRVFSFQEVLDWRFLILGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. NCBI nr
Match: XP_008350439.1 (PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432.1 PREDICTED: uncharacterized protein LOC103436776 [Malus domestica] >XP_017185825.1 PREDICTED: uncharacterized protein LOC103428160 [Malus domestica])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W+N  +++V SFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEQMRLWSNCHQYRVFSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. NCBI nr
Match: XP_017973334.1 (PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335.1 PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  +V SFQEVLDWRFLV GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRVFSFQEVLDWRFLVHGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. TAIR10
Match: AT4G19112.1 (conserved peptide upstream open reading frame 25)

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-08
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME    W + + +++ SFQE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQVFVWPSCYHYRLFSFQEALDWRFLVRSDFLVGSFVNCT 41

[Close]

BLAST of Carg16290 vs. TAIR10
Match: AT5G45428.1 (conserved peptide upstream open reading frame 24)

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME     +  ++++V S QE LDWRFLV  DFL+ SFVNCT
Sbjct: 1  MEQDYICSGCYQYRVFSLQEALDWRFLVHSDFLIGSFVNCT 41

[Close]

BLAST of Carg16290 vs. TrEMBL
Match: tr|A0A1S3BKY3|A0A1S3BKY3_CUCME (uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME AS WTNSF+HQVCSFQEVLDWRFLVLGDFLLVSFVNCT
Sbjct: 1  MEPASIWTNSFQHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. TrEMBL
Match: tr|A0A1S3VQZ5|A0A1S3VQZ5_VIGRR (uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777653 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FWTN ++++  +FQEVLDWRF +LGDFL VSFVNCT
Sbjct: 1  MEGVCFWTNCYQYRFFAFQEVLDWRFFILGDFLRVSFVNCT 41

[Close]

BLAST of Carg16290 vs. TrEMBL
Match: tr|A0A0D2PZL6|A0A0D2PZL6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 38 EALDPNSSHMELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          E     +++ME   FW+N +  +V  FQEVLDWRFL  GDFLLVSFVNCT
Sbjct: 10 ERAKERANNMEQVCFWSNCYLFRVFFFQEVLDWRFLARGDFLLVSFVNCT 59

[Close]

BLAST of Carg16290 vs. TrEMBL
Match: tr|A0A1U8MUE2|A0A1U8MUE2_GOSHI (uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC107941384 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 1  MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 41

[Close]

BLAST of Carg16290 vs. TrEMBL
Match: tr|A0A0D2QN48|A0A0D2QN48_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 47 MELASFWTNSFRHQVCSFQEVLDWRFLVLGDFLLVSFVNCT 88
          ME   FW+N +  ++ SFQEVLDWRF++ GDFLLVSFVNCT
Sbjct: 57 MEQVCFWSNCYLFRMFSFQEVLDWRFIIHGDFLLVSFVNCT 97

The following BLAST results are available for this feature:

BLAST of Carg16290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650312.1	1.7e-13	90.24	PREDICTED: uncharacterized protein LOC105434773 [Cucumis sativus]	[more]
XP_008448598.1	2.8e-13	92.68	PREDICTED: uncharacterized protein LOC103490726 [Cucumis melo]	[more]
XP_011028056.1	1.3e-10	80.49	PREDICTED: uncharacterized protein LOC105128195 [Populus euphratica]	[more]
XP_008350439.1	6.1e-08	73.17	PREDICTED: uncharacterized protein LOC103413779 [Malus domestica] >XP_017188432....	[more]
XP_017973334.1	1.0e-07	73.17	PREDICTED: uncharacterized protein LOC108661394 [Theobroma cacao] >XP_017973335....	[more]

BLAST of Carg16290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19112.1	9.7e-08	56.10	conserved peptide upstream open reading frame 25	[more]
AT5G45428.1	5.3e-06	53.66	conserved peptide upstream open reading frame 24	[more]

BLAST of Carg16290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY3\|A0A1S3BKY3_CUCME	1.9e-13	92.68	uncharacterized protein LOC103490726 OS=Cucumis melo OX=3656 GN=LOC103490726 PE=...	[more]
tr\|A0A1S3VQZ5\|A0A1S3VQZ5_VIGRR	2.0e-07	65.85	uncharacterized protein LOC106777653 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|A0A0D2PZL6\|A0A0D2PZL6_GOSRA	2.0e-07	58.00	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G220600 PE=4 ...	[more]
tr\|A0A1U8MUE2\|A0A1U8MUE2_GOSHI	3.4e-07	65.85	uncharacterized protein LOC107938578 OS=Gossypium hirsutum OX=3635 GN=LOC1079413...	[more]
tr\|A0A0D2QN48\|A0A0D2QN48_GOSRA	3.4e-07	65.85	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G187000 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16290-RA	Carg16290-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16290	Silver-seed gourd	carcarB575
Carg16290	Cucumber (Gy14) v2	carcgybB0677
Carg16290	Cucumber (Gy14) v1	carcgyB0759
Carg16290	Cucurbita maxima (Rimu)	carcmaB0956
Carg16290	Cucurbita maxima (Rimu)	carcmaB0957
Carg16290	Cucurbita moschata (Rifu)	carcmoB0932
Carg16290	Cucurbita moschata (Rifu)	carcmoB0933
Carg16290	Cucurbita pepo (Zucchini)	carcpeB0955
Carg16290	Cucurbita pepo (Zucchini)	carcpeB0957
Carg16290	Wild cucumber (PI 183967)	carcpiB0713
Carg16290	Cucumber (Chinese Long) v2	carcuB0701
Carg16290	Cucumber (Chinese Long) v3	carcucB0715
Carg16290	Bottle gourd (USVL1VR-Ls)	carlsiB621
Carg16290	Melon (DHL92) v3.5.1	carmeB0681
Carg16290	Melon (DHL92) v3.6.1	carmedB0693
Carg16290	Watermelon (Charleston Gray)	carwcgB0655
Carg16290	Watermelon (97103) v1	carwmB0678
Carg16290	Watermelon (97103) v2	carwmbB0705