Carg15341-RA (mRNA) Silver-seed gourd

Overview
NameCarg15341-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_085 : 430414 .. 433091 (+)
Sequence length849
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACAGTACACTCTTTAATTACTTGTACTTTTCAATATTTTCTCTTCTTGTTTGTTGGTCAATCAATTTATCTTCTCTAAACATTGAAATTTTTTGAAGGGATGATTGGCAATTAATAACGGCAAATACAAAATGTTTCTGTGCTAGGACCATAGTGATAATATCATAACGTAAAGTACACTCTTTAATTAGGCATGTTTGGTTTTTAATAAGTTTTGGTTTATAAATTTTGAAATTAGGAATATTTGAATTTGTATTATGTATAGAGAGAGTTCAACAAATATCCTTGAAAGAGATAAACAATGTCTCATTTACTAAGCTGAGTTCAGATTTGTGTAACATTTGTATTTAAATTATTCGATTGAACAAGATATTGAACCTTGAGTGATTATAACATATTTTCATAATTTGGCAAACTAAAAAGTTTACACAGTTCATAGGATTAGTAATTCTCTAGCAAGGCAAACCATCTGCAGAACAAAAATTTGACTTGGCCTCAAATTACTCTAGTCTAACTTATAATTTGTAATACTTTCTTTAGCTTAGTTTTTCTTTAAGGTAAATTTTAAAAAACACCCTAAAGATTACCTACGTTCTAAAAAGATCAAATTTGATTACAAGAAGAAGGTCTTCTTAGGTTTTCTTTTCTTACAAAGAATAATTGAACAAAAAAATTCTTAGGGGTCTTCTTCTTTTATTTTTCAACATGATCAAAGCTGTACAACAAAAATAAGGACCCTTGCTGCAAATTCTCTTCTTGCTTTCTTCTAAGTCTGATCATCTTCTGCTATCTTAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGGTAAACTCTTGGAACTGGTGCTAATCACCAAGTTCTTCAGCTTTGCTGAATCTCCCGCACTGGCTCGCCCAGTAATCAACTCCAGATTCTTATACAAGCTCTGTTTCACCAAATTCTTCATCATTTTTCTCCCTTCCTGAACTTCTCTTTGATTTACAGGCGACCCGATCACTATTCTTCCTGTCTGTGGCCCAGAATGTGGATACATTTTTGCTTGCTTCTCATTCTTAAACCATTGTAATAGCTTTAGGGCCCTCTTTTGAGCCAGTGGACTACCTAGTAATCCCACTTCAAGAAGCACTGCAACAATCCCAGATTTCGCCATCTTCTCTCTCTGTTCTGAGCTCTGATGTGCCAATATCATTAAGATATAAGCGGATAACTCAATAGATTTTGGTTTGTCCTCCCATGTCATAATCTCTATCAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGGTAAATGCTGGTTTTGGCCAGAACGGTTCAAAACTTTAGAGGCAGATGACAAACCAAACCACAAACCCAGTAGGCATAACCTTAACCTTAAAGTAGACATCTTTTTTATTAGTATGATGCTCAACTAAACATTTGATTTATAATTTCAATTAGGACAGATCCAAAACTTAACTGCACTAACCACATGCCTATCTTGCCAGAATATAGAGTTGACCCAATATGCTTAATATTTTTCCTCTTTCTCTCTCTTAATTAATACCTTACAGCTTTTGGTTATTTATGTATACCCTTTTTCAAATTTTGGGTTATCGAGGACATCCAAACTACTGCACATCTTTCTGTAAAGTTTCTATTTTTAATTTGAATTTGGGTTCTGTCTGCCTTAACTGTTCCACTCTCTCTTTTATTTTGATACCATCTGAAGGTGAAGCTAATCTGACCCTTTAAAAATTGAGATGATCATTGATGGAAACTCTCAAATGAGAAGAAATTTCCCATCAAATGACTTCTATTTACCATTAGGGGAAGTGTTTTTCTTTTTTAACTAAGAGAACAAAGACATGGATCGATGCACGTAAAACAGAGAACACAAAATTTTGAATGATTTTAAAGTATAACTTACTCGAAGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

mRNA sequence

ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACACTTAGTTTTTCTTTAAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

Coding sequence (CDS)

ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACACTTAGTTTTTCTTTAAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

Protein sequence

MVGERALAVSKKEKEGTVSKKSSEKRGAPEIFTLSFSLRVVAEEYFRASVGKKYGAQKLRSERLSGTIGLLSIALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLWVSKFEVNSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLCKIPASTMRALFLKNGTEKSKSKSESSHMLPLASSSNASTATSGRPTASDVTIETKAGTTRSSTINFFTFTSSLAIFTITLAAISFSSQLPK
Homology
[Close]
BLAST of Carg15341-RA vs. NCBI nr
Match: PON73814.1 (hypothetical protein TorRG33x02_248660 [Trema orientalis])

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 65/135 (48.15%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 73  IALFPCEVTTKFPNAARALSEWPL-DEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHL 132
           +A FP +VTTK PN  RA SE  L D D  KRV TTPFET GP  S  VE L++V +   
Sbjct: 1   MAFFPIKVTTKLPNTPRAFSESSLFDGDNFKRVSTTPFETNGPALSKMVERLHKVPKHDS 60

Query: 133 WVSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSL 192
           +VS   V +SRIP RNG T+S   K   K     +D+  SN A      SS   +  GS 
Sbjct: 61  FVSMLVVLDSRIPMRNG-TISDEAKG--KGVFANEDNVKSNSANPSLVGSSRRLVFFGSF 120

Query: 193 CKIPASTMRALFLKN 206
            +IPAST+ ALFLKN
Sbjct: 121 DRIPASTISALFLKN 132

[Close]
BLAST of Carg15341-RA vs. NCBI nr
Match: PON41347.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_290160 [Parasponia andersonii])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 73  IALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLW 132
           +A FP +VTTK PN ARA SE   D +  KRV TTPFET  P  S  VE L++V +   +
Sbjct: 1   MAFFPIKVTTKLPNTARAFSESSFDGNNFKRVSTTPFETNAPALSKMVERLHKVPKHDSF 60

Query: 133 VSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLC 192
           VS   V +SRIP RNG T+S   K  V      +D+  SN A      SS   +  GS  
Sbjct: 61  VSMLVVLDSRIPMRNG-TISDEAKGDV---FANEDNVKSNSANPSLVGSSRRLVFFGSFD 120

Query: 193 KIPASTMRALFLKN 206
           +IPAST+ ALFL+N
Sbjct: 121 RIPASTISALFLRN 130

[Close]
BLAST of Carg15341-RA vs. TrEMBL
Match: tr|A0A2P5DKI6|A0A2P5DKI6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_248660 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 65/135 (48.15%), Postives = 78/135 (57.78%), Query Frame = 0 

Query: 73  IALFPCEVTTKFPNAARALSEWPL-DEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHL 132
           +A FP +VTTK PN  RA SE  L D D  KRV TTPFET GP  S  VE L++V +   
Sbjct: 1   MAFFPIKVTTKLPNTPRAFSESSLFDGDNFKRVSTTPFETNGPALSKMVERLHKVPKHDS 60

Query: 133 WVSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSL 192
           +VS   V +SRIP RNG T+S   K   K     +D+  SN A      SS   +  GS 
Sbjct: 61  FVSMLVVLDSRIPMRNG-TISDEAKG--KGVFANEDNVKSNSANPSLVGSSRRLVFFGSF 120

Query: 193 CKIPASTMRALFLKN 206
            +IPAST+ ALFLKN
Sbjct: 121 DRIPASTISALFLKN 132

[Close]
BLAST of Carg15341-RA vs. TrEMBL
Match: tr|A0A2P5AXU0|A0A2P5AXU0_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290160 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 73  IALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLW 132
           +A FP +VTTK PN ARA SE   D +  KRV TTPFET  P  S  VE L++V +   +
Sbjct: 1   MAFFPIKVTTKLPNTARAFSESSFDGNNFKRVSTTPFETNAPALSKMVERLHKVPKHDSF 60

Query: 133 VSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLC 192
           VS   V +SRIP RNG T+S   K  V      +D+  SN A      SS   +  GS  
Sbjct: 61  VSMLVVLDSRIPMRNG-TISDEAKGDV---FANEDNVKSNSANPSLVGSSRRLVFFGSFD 120

Query: 193 KIPASTMRALFLKN 206
           +IPAST+ ALFL+N
Sbjct: 121 RIPASTISALFLRN 130

The following BLAST results are available for this feature:
BLAST of Carg15341-RA vs. NCBI nr
Match NameE-valueIdentityDescription
PON73814.11.6e-1748.15hypothetical protein TorRG33x02_248660 [Trema orientalis][more]
PON41347.13.6e-1746.27LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_290160 [Parasponia anderson... [more]
BLAST of Carg15341-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg15341-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg15341-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2P5DKI6|A0A2P5DKI6_9ROSA1.1e-1748.15Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_248660 PE=4 S... [more]
tr|A0A2P5AXU0|A0A2P5AXU0_PARAD2.4e-1746.27Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290160 PE... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15341Carg15341gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15341-RACarg15341-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15341-RA.exon.1Carg15341-RA.exon.1exon
Carg15341-RA.exon.2Carg15341-RA.exon.2exon
Carg15341-RA.exon.3Carg15341-RA.exon.3exon
Carg15341-RA.exon.4Carg15341-RA.exon.4exon
Carg15341-RA.exon.5Carg15341-RA.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15341-RA.CDS.1Carg15341-RA.CDS.1CDS
Carg15341-RA.CDS.2Carg15341-RA.CDS.2CDS
Carg15341-RA.CDS.3Carg15341-RA.CDS.3CDS
Carg15341-RA.CDS.4Carg15341-RA.CDS.4CDS
Carg15341-RA.CDS.5Carg15341-RA.CDS.5CDS


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..245