Carg15341 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15341
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_085 : 430414 .. 433091 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACAGTACACTCTTTAATTACTTGTACTTTTCAATATTTTCTCTTCTTGTTTGTTGGTCAATCAATTTATCTTCTCTAAACATTGAAATTTTTTGAAGGGATGATTGGCAATTAATAACGGCAAATACAAAATGTTTCTGTGCTAGGACCATAGTGATAATATCATAACGTAAAGTACACTCTTTAATTAGGCATGTTTGGTTTTTAATAAGTTTTGGTTTATAAATTTTGAAATTAGGAATATTTGAATTTGTATTATGTATAGAGAGAGTTCAACAAATATCCTTGAAAGAGATAAACAATGTCTCATTTACTAAGCTGAGTTCAGATTTGTGTAACATTTGTATTTAAATTATTCGATTGAACAAGATATTGAACCTTGAGTGATTATAACATATTTTCATAATTTGGCAAACTAAAAAGTTTACACAGTTCATAGGATTAGTAATTCTCTAGCAAGGCAAACCATCTGCAGAACAAAAATTTGACTTGGCCTCAAATTACTCTAGTCTAACTTATAATTTGTAATACTTTCTTTAGCTTAGTTTTTCTTTAAGGTAAATTTTAAAAAACACCCTAAAGATTACCTACGTTCTAAAAAGATCAAATTTGATTACAAGAAGAAGGTCTTCTTAGGTTTTCTTTTCTTACAAAGAATAATTGAACAAAAAAATTCTTAGGGGTCTTCTTCTTTTATTTTTCAACATGATCAAAGCTGTACAACAAAAATAAGGACCCTTGCTGCAAATTCTCTTCTTGCTTTCTTCTAAGTCTGATCATCTTCTGCTATCTTAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGGTAAACTCTTGGAACTGGTGCTAATCACCAAGTTCTTCAGCTTTGCTGAATCTCCCGCACTGGCTCGCCCAGTAATCAACTCCAGATTCTTATACAAGCTCTGTTTCACCAAATTCTTCATCATTTTTCTCCCTTCCTGAACTTCTCTTTGATTTACAGGCGACCCGATCACTATTCTTCCTGTCTGTGGCCCAGAATGTGGATACATTTTTGCTTGCTTCTCATTCTTAAACCATTGTAATAGCTTTAGGGCCCTCTTTTGAGCCAGTGGACTACCTAGTAATCCCACTTCAAGAAGCACTGCAACAATCCCAGATTTCGCCATCTTCTCTCTCTGTTCTGAGCTCTGATGTGCCAATATCATTAAGATATAAGCGGATAACTCAATAGATTTTGGTTTGTCCTCCCATGTCATAATCTCTATCAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGGTAAATGCTGGTTTTGGCCAGAACGGTTCAAAACTTTAGAGGCAGATGACAAACCAAACCACAAACCCAGTAGGCATAACCTTAACCTTAAAGTAGACATCTTTTTTATTAGTATGATGCTCAACTAAACATTTGATTTATAATTTCAATTAGGACAGATCCAAAACTTAACTGCACTAACCACATGCCTATCTTGCCAGAATATAGAGTTGACCCAATATGCTTAATATTTTTCCTCTTTCTCTCTCTTAATTAATACCTTACAGCTTTTGGTTATTTATGTATACCCTTTTTCAAATTTTGGGTTATCGAGGACATCCAAACTACTGCACATCTTTCTGTAAAGTTTCTATTTTTAATTTGAATTTGGGTTCTGTCTGCCTTAACTGTTCCACTCTCTCTTTTATTTTGATACCATCTGAAGGTGAAGCTAATCTGACCCTTTAAAAATTGAGATGATCATTGATGGAAACTCTCAAATGAGAAGAAATTTCCCATCAAATGACTTCTATTTACCATTAGGGGAAGTGTTTTTCTTTTTTAACTAAGAGAACAAAGACATGGATCGATGCACGTAAAACAGAGAACACAAAATTTTGAATGATTTTAAAGTATAACTTACTCGAAGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

mRNA sequence

ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACACTTAGTTTTTCTTTAAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

Coding sequence (CDS)

ATGGTGGGAGAGAGAGCTTTGGCAGTGTCCAAAAAGGAGAAGGAAGGGACGGTGTCCAAAAAGAGTTCTGAGAAGAGAGGGGCCCCTGAAATATTTACACTTAGTTTTTCTTTAAGGGTCGTTGCTGAAGAATATTTTCGTGCATCCGTTGGAAAAAAATATGGAGCACAGAAATTAAGATCAGAAAGACTATCCGGGACCATTGGGCTGCTCTCCATTGCCCTTTTTCCCTGTGAAGTCACCACCAAGTTCCCCAATGCTGCGAGGGCTCTATCCGAATGGCCTTTGGATGAGGACATTCTCAAGAGGGTTTGCACCACACCATTTGAGACCAGAGGCCCTACATTCTCTAGCACTGTGGAGATATTATACAGAGTTTCAAGGCAGCATCTTTGGGTCTCGAAATTTGAGGTTAATTCTAGAATCCCCAAAAGGAATGGGATAACACTTTCATTCGCCTGTAAGGCAATTGTGAAATGGGAATTGATCAGAGATGACAGTGACAGCAGCAATCTTGCAAAATCATGTTTTGCTGATTCATCCATGGCTTGGATGTTACTTGGAAGTTTGTGTAAGATTCCTGCTTCCACCATGAGGGCCTTGTTCCTAAAGAATGGTACAGAGAAAAGTAAGTCCAAGTCAGAGTCGAGCCACATGCTTCCTTTGGCAAGCTCAAGCAACGCTTCCACAGCCACTTCCGGTCGCCCCACGGCGTCGGACGTCACCATCGAAACCAAGGCCGGTACAACCCGGAGCTCCACCATTAACTTTTTCACCTTCACGTCCTCTTTAGCCATATTCACAATCACCTTGGCTGCCATCTCCTTCTCTTCCCAGCTCCCAAAGTGA

Protein sequence

MVGERALAVSKKEKEGTVSKKSSEKRGAPEIFTLSFSLRVVAEEYFRASVGKKYGAQKLRSERLSGTIGLLSIALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLWVSKFEVNSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLCKIPASTMRALFLKNGTEKSKSKSESSHMLPLASSSNASTATSGRPTASDVTIETKAGTTRSSTINFFTFTSSLAIFTITLAAISFSSQLPK

Homology

[Close]

BLAST of Carg15341 vs. NCBI nr
Match: PON73814.1 (hypothetical protein TorRG33x02_248660 [Trema orientalis])

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 65/135 (48.15%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 73  IALFPCEVTTKFPNAARALSEWPL-DEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHL 132
           +A FP +VTTK PN  RA SE  L D D  KRV TTPFET GP  S  VE L++V +   
Sbjct: 1   MAFFPIKVTTKLPNTPRAFSESSLFDGDNFKRVSTTPFETNGPALSKMVERLHKVPKHDS 60

Query: 133 WVSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSL 192
           +VS   V +SRIP RNG T+S   K   K     +D+  SN A      SS   +  GS 
Sbjct: 61  FVSMLVVLDSRIPMRNG-TISDEAKG--KGVFANEDNVKSNSANPSLVGSSRRLVFFGSF 120

Query: 193 CKIPASTMRALFLKN 206
            +IPAST+ ALFLKN
Sbjct: 121 DRIPASTISALFLKN 132

[Close]

BLAST of Carg15341 vs. NCBI nr
Match: PON41347.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_290160 [Parasponia andersonii])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 73  IALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLW 132
           +A FP +VTTK PN ARA SE   D +  KRV TTPFET  P  S  VE L++V +   +
Sbjct: 1   MAFFPIKVTTKLPNTARAFSESSFDGNNFKRVSTTPFETNAPALSKMVERLHKVPKHDSF 60

Query: 133 VSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLC 192
           VS   V +SRIP RNG T+S   K  V      +D+  SN A      SS   +  GS  
Sbjct: 61  VSMLVVLDSRIPMRNG-TISDEAKGDV---FANEDNVKSNSANPSLVGSSRRLVFFGSFD 120

Query: 193 KIPASTMRALFLKN 206
           +IPAST+ ALFL+N
Sbjct: 121 RIPASTISALFLRN 130

[Close]

BLAST of Carg15341 vs. TrEMBL
Match: tr|A0A2P5DKI6|A0A2P5DKI6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_248660 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 65/135 (48.15%), Postives = 78/135 (57.78%), Query Frame = 0


Query: 73  IALFPCEVTTKFPNAARALSEWPL-DEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHL 132
           +A FP +VTTK PN  RA SE  L D D  KRV TTPFET GP  S  VE L++V +   
Sbjct: 1   MAFFPIKVTTKLPNTPRAFSESSLFDGDNFKRVSTTPFETNGPALSKMVERLHKVPKHDS 60

Query: 133 WVSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSL 192
           +VS   V +SRIP RNG T+S   K   K     +D+  SN A      SS   +  GS 
Sbjct: 61  FVSMLVVLDSRIPMRNG-TISDEAKG--KGVFANEDNVKSNSANPSLVGSSRRLVFFGSF 120

Query: 193 CKIPASTMRALFLKN 206
            +IPAST+ ALFLKN
Sbjct: 121 DRIPASTISALFLKN 132

[Close]

BLAST of Carg15341 vs. TrEMBL
Match: tr|A0A2P5AXU0|A0A2P5AXU0_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290160 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-17
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 0


Query: 73  IALFPCEVTTKFPNAARALSEWPLDEDILKRVCTTPFETRGPTFSSTVEILYRVSRQHLW 132
           +A FP +VTTK PN ARA SE   D +  KRV TTPFET  P  S  VE L++V +   +
Sbjct: 1   MAFFPIKVTTKLPNTARAFSESSFDGNNFKRVSTTPFETNAPALSKMVERLHKVPKHDSF 60

Query: 133 VSKFEV-NSRIPKRNGITLSFACKAIVKWELIRDDSDSSNLAKSCFADSSMAWMLLGSLC 192
           VS   V +SRIP RNG T+S   K  V      +D+  SN A      SS   +  GS  
Sbjct: 61  VSMLVVLDSRIPMRNG-TISDEAKGDV---FANEDNVKSNSANPSLVGSSRRLVFFGSFD 120

Query: 193 KIPASTMRALFLKN 206
           +IPAST+ ALFL+N
Sbjct: 121 RIPASTISALFLRN 130

The following BLAST results are available for this feature:

BLAST of Carg15341 vs. NCBI nr


Match Name	E-value	Identity	Description
PON73814.1	1.6e-17	48.15	hypothetical protein TorRG33x02_248660 [Trema orientalis]	[more]
PON41347.1	3.6e-17	46.27	LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_290160 [Parasponia anderson...	[more]

BLAST of Carg15341 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg15341 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15341 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5DKI6\|A0A2P5DKI6_9ROSA	1.1e-17	48.15	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_248660 PE=4 S...	[more]
tr\|A0A2P5AXU0\|A0A2P5AXU0_PARAD	2.4e-17	46.27	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_290160 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15341-RA	Carg15341-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..245

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15341	CmoCh03G013200	Cucurbita moschata (Rifu)	carcmoB0742

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15341	Silver-seed gourd	carcarB174
Carg15341	Silver-seed gourd	carcarB499
Carg15341	Silver-seed gourd	carcarB508
Carg15341	Cucumber (Gy14) v2	carcgybB0552
Carg15341	Cucumber (Gy14) v2	carcgybB0554
Carg15341	Cucumber (Gy14) v1	carcgyB0623
Carg15341	Cucumber (Gy14) v1	carcgyB0626
Carg15341	Cucurbita maxima (Rimu)	carcmaB0761
Carg15341	Cucurbita maxima (Rimu)	carcmaB0762
Carg15341	Cucurbita maxima (Rimu)	carcmaB0763
Carg15341	Cucurbita maxima (Rimu)	carcmaB0766
Carg15341	Cucurbita moschata (Rifu)	carcmoB0739
Carg15341	Cucurbita moschata (Rifu)	carcmoB0741
Carg15341	Cucurbita moschata (Rifu)	carcmoB0745
Carg15341	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15341	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15341	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15341	Cucurbita pepo (Zucchini)	carcpeB0775
Carg15341	Wild cucumber (PI 183967)	carcpiB0582
Carg15341	Wild cucumber (PI 183967)	carcpiB0584
Carg15341	Cucumber (Chinese Long) v2	carcuB0576
Carg15341	Cucumber (Chinese Long) v2	carcuB0578
Carg15341	Cucumber (Chinese Long) v3	carcucB0583
Carg15341	Cucumber (Chinese Long) v3	carcucB0585
Carg15341	Bottle gourd (USVL1VR-Ls)	carlsiB496
Carg15341	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15341	Melon (DHL92) v3.5.1	carmeB0551
Carg15341	Melon (DHL92) v3.5.1	carmeB0554
Carg15341	Melon (DHL92) v3.6.1	carmedB0557
Carg15341	Melon (DHL92) v3.6.1	carmedB0560
Carg15341	Watermelon (Charleston Gray)	carwcgB0531
Carg15341	Watermelon (Charleston Gray)	carwcgB0532
Carg15341	Watermelon (97103) v1	carwmB0544
Carg15341	Watermelon (97103) v1	carwmB0545
Carg15341	Watermelon (97103) v2	carwmbB0571
Carg15341	Watermelon (97103) v2	carwmbB0573
Carg15341	Wax gourd	carwgoB0657
Carg15341	Wax gourd	carwgoB0659