Carg15281-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15281-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cell number regulator 8
Location	Cucurbita_argyrosperma_scaffold_085 : 149915 .. 151367 (-)
Sequence length	546

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACGGCGAAAACCTCGAGGAATCAAGCCCACTTCTCGGCAAGGTCGTTGAAAAAGCAGATGAGAAGGATACACATCGCATCTCCACGGGGGATAGGGCCGATGCAGTACCTCCGCCGCCTCCTGTCCGGAAATTTGCGGAGGAAGAGAACGGCGGCGATGGCTGTGATTATGGGTGGACTGCCGATGGGCTCCCGATTCATGGTAGTGTGATGGGAGAGCCGGTAGGTCGGGCCCAATGGGAAACTGGTCTCTGCGCTTGTCTTGGTCGCCACGATGAGTTCTGCAGTAGCGATCTAGAAGTTTGTAAGTCGATTCGTTTTCTTCATTTGAATTGAGTTTTTGCTGAAAGGTTAGGCTTTGGGGATACGTGATTCGTTTTCCCTGATTTTTGGGTTTGTAGCTTATTCCTACCAAAATATTCTTCTTCTTACTTTAGATAGGGTGCCTTATCCACCATGATCTTAATATGCTAGCACTTCTTTAGGCAGGAGTATTCTGTTGTTTCTTCAAATAGAGTTTCAGATAAGATCTGGGCTATGCAGAATTCTTGGATCTCTAATACCATTCTTATCACTTTTAATTGGTTTGAATAAACAAGTTCCCTAATCCTTAATCTTCCAATAAATACCCATTCTGATCCTTGGGGTCTCGATGGGGCCTGGATTACAATAAGAAAAGGAATCCTTATTTTCACGGGGAGGAGGGGCTGGAGGAATTCAACACATTTATAGGAGGGTATTGCTATAAACTTCTTTAGGGAGGGATTTCTATTGACTACTAGGGTTTTACTTCTTGCTTCAACTTGAAGAGGTAAAATTAGGGAAGAAAGTGAAATGAAATTAGGAGAAAATAAGGGAAAGCAACTTACAATGAGTGTTTGTAGGTCTTATTGGAAGTGTGGCTCCTTGTATGCTGTATGGAAGCAACGCAGAGAGACTTGGGTCTACTCCTGGGACTTTTGCAAACCATTGCATGTCATATTCTGGTCTCTACTTAATTGGAACCTCTTTCTTTGGTTGGAACTGCCTTGCTCCATGGTTTACATTTCCTACCCGCACAGCTATCCGCCGAATGTTCAATCTGGAGGCAAGTTGAACCTTCTCCTTTACCATTCTTGATTCTCAATATCTGCAAATGAATGCATGACTTGACATTCAATTCAATTGATGGGAAAGTTTATACATTACCTTGTTTCATGACGAGCAGGGTAACTGCGAGGCACTTCATAGGTCATGTGGCTGTTGCGGACTCTGTGTTGAAGACGAAGTTCAGCGTGAGCACTGTGAATCTGTCTGTGACTTTGCAACTCATGTCTTCTGTCACACCTGTGCACTTTGCCAGGAAGGTCGTGAACTTCGTCGGAGGATGCCTCACCCAGGGTTCAATGCTCGTCCTGTGTTAGTCATGATCCCACCTGCAGAACAGTCCATGGGGCGTGGAGTCTGA

mRNA sequence

ATGGCCAACGGCGAAAACCTCGAGGAATCAAGCCCACTTCTCGGCAAGGTCGTTGAAAAAGCAGATGAGAAGGATACACATCGCATCTCCACGGGGGATAGGGCCGATGCAGTACCTCCGCCGCCTCCTGTCCGGAAATTTGCGGAGGAAGAGAACGGCGGCGATGGCTGTGATTATGGGTGGACTGCCGATGGGCTCCCGATTCATGGTAGTGTGATGGGAGAGCCGGTAGGTCGGGCCCAATGGGAAACTGGTCTCTGCGCTTGTCTTGGTCGCCACGATGAGTTCTGCAGTAGCGATCTAGAAGGTAACTGCGAGGCACTTCATAGGTCATGTGGCTGTTGCGGACTCTGTGTTGAAGACGAAGTTCAGCGTGAGCACTGTGAATCTGTCTGTGACTTTGCAACTCATGTCTTCTGTCACACCTGTGCACTTTGCCAGGAAGGTCGTGAACTTCGTCGGAGGATGCCTCACCCAGGGTTCAATGCTCGTCCTGTGTTAGTCATGATCCCACCTGCAGAACAGTCCATGGGGCGTGGAGTCTGA

Coding sequence (CDS)

ATGGCCAACGGCGAAAACCTCGAGGAATCAAGCCCACTTCTCGGCAAGGTCGTTGAAAAAGCAGATGAGAAGGATACACATCGCATCTCCACGGGGGATAGGGCCGATGCAGTACCTCCGCCGCCTCCTGTCCGGAAATTTGCGGAGGAAGAGAACGGCGGCGATGGCTGTGATTATGGGTGGACTGCCGATGGGCTCCCGATTCATGGTAGTGTGATGGGAGAGCCGGTAGGTCGGGCCCAATGGGAAACTGGTCTCTGCGCTTGTCTTGGTCGCCACGATGAGTTCTGCAGTAGCGATCTAGAAGGTAACTGCGAGGCACTTCATAGGTCATGTGGCTGTTGCGGACTCTGTGTTGAAGACGAAGTTCAGCGTGAGCACTGTGAATCTGTCTGTGACTTTGCAACTCATGTCTTCTGTCACACCTGTGCACTTTGCCAGGAAGGTCGTGAACTTCGTCGGAGGATGCCTCACCCAGGGTTCAATGCTCGTCCTGTGTTAGTCATGATCCCACCTGCAGAACAGTCCATGGGGCGTGGAGTCTGA

Protein sequence

MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPPPPPVRKFAEEENGGDGCDYGWTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSDLEGNCEALHRSCGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIPPAEQSMGRGV

Homology

[Close]

BLAST of Carg15281-RA vs. NCBI nr
Match: XP_022926040.1 (cell number regulator 8-like [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 4.3e-88
Identity = 181/250 (72.40%), Postives = 181/250 (72.40%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG
Sbjct: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD                    
Sbjct: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSDLEVCLIGSVAPCMLYGSNAE 120

Query: 121 -------------------------------------------------LEGNCEALHRS 180
                                                            LEGNCEALHRS
Sbjct: 121 RLGSTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTFPTRTAIRRMFNLEGNCEALHRS 180

Query: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 182
           CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP
Sbjct: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 240

[Close]

BLAST of Carg15281-RA vs. NCBI nr
Match: XP_022979164.1 (cell number regulator 8-like [Cucurbita maxima])

HSP 1 Score: 331.3 bits (848), Expect = 2.1e-87
Identity = 168/250 (67.20%), Postives = 168/250 (67.20%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MANGENLEESSPLLGKVVEKADEKDTHRIST DRADAVP            NGGDGCDYG
Sbjct: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTADRADAVPPPPAVRKYAEEENGGDGCDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD                    
Sbjct: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSDIEVCLIGSVAPCMLYGSNAE 120

Query: 121 -------------------------------------------------LEGNCEALHRS 180
                                                            LEGNCEALHRS
Sbjct: 121 RLGSTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTFPTRTAIRRMFNLEGNCEALHRS 180

Query: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 182
           CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP
Sbjct: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 240

[Close]

BLAST of Carg15281-RA vs. NCBI nr
Match: XP_023543087.1 (cell number regulator 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.3 bits (848), Expect = 2.1e-87
Identity = 168/250 (67.20%), Postives = 168/250 (67.20%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MAN ENLEESSPLLGKVVEKADEKDTHRISTGDRADAVP            NGGDGCDYG
Sbjct: 1   MANSENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPPPLPVRKYTEEENGGDGCDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD                    
Sbjct: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSDLEVCLVGSVAPCMLYGSNAE 120

Query: 121 -------------------------------------------------LEGNCEALHRS 180
                                                            LEGNCEALHRS
Sbjct: 121 RLGSTPGAFANHCMSYSGLYLIGTSFFGWNCLAPWFTFPTRTAIRRMFNLEGNCEALHRS 180

Query: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 182
           CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP
Sbjct: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 240

[Close]

BLAST of Carg15281-RA vs. NCBI nr
Match: XP_022963293.1 (cell number regulator 8-like [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 149/250 (59.60%), Postives = 155/250 (62.00%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MA+ ENLEESSPLLGKVVE ADEKDTHR ST  + DAVP            N G G DYG
Sbjct: 1   MASAENLEESSPLLGKVVENADEKDTHRTSTAAKPDAVPPPSPVRKDAAEENKGTGGDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLP+ GSV+GEPVGR QWETGLCACLGRHDEFCSSD                    
Sbjct: 61  WTADGLPVDGSVVGEPVGRPQWETGLCACLGRHDEFCSSDLEVCLLGSVAPCMLYGSNAE 120

Query: 121 -------------------------------------------------LEGNCEALHRS 180
                                                            LEGNCEA HRS
Sbjct: 121 RLGTTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTFPTRIRIRRTFNLEGNCEAFHRS 180

Query: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 182
           CGCCGLCVEDEVQREHCESVCDFATHV CHTCALCQEGRELRRR+PHPGFNARPVLVMIP
Sbjct: 181 CGCCGLCVEDEVQREHCESVCDFATHVLCHTCALCQEGRELRRRIPHPGFNARPVLVMIP 240

[Close]

BLAST of Carg15281-RA vs. NCBI nr
Match: XP_023518870.1 (cell number regulator 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 149/250 (59.60%), Postives = 155/250 (62.00%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MA+ ENLEESSPLLGKVVE ADEKDTHR ST  + DAVP            N G G DYG
Sbjct: 1   MASAENLEESSPLLGKVVENADEKDTHRTSTAAKPDAVPPPSPVRKDAAEENKGTGGDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLP+ GSV+GEPVGR QWETGLCACLGRHDEFCSSD                    
Sbjct: 61  WTADGLPVDGSVVGEPVGRPQWETGLCACLGRHDEFCSSDLEVCLLGSVAPCLLYGSNAE 120

Query: 121 -------------------------------------------------LEGNCEALHRS 180
                                                            LEGNCEA HRS
Sbjct: 121 RLGTTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTFPTRIRIRRTFNLEGNCEAFHRS 180

Query: 181 CGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMIP 182
           CGCCGLCVEDEVQREHCESVCDFATHV CHTCALCQEGRELRRR+PHPGFNARPVLVMIP
Sbjct: 181 CGCCGLCVEDEVQREHCESVCDFATHVLCHTCALCQEGRELRRRIPHPGFNARPVLVMIP 240

[Close]

BLAST of Carg15281-RA vs. TAIR10
Match: AT2G37110.1 (PLAC8 family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.4e-45
Identity = 104/246 (42.28%), Postives = 125/246 (50.81%), Query Frame = 0


Query: 4   GENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYGWTA 63
           G+  EESSPLL     K +E D    S  D A A P                  +YGWTA
Sbjct: 12  GDEYEESSPLL-----KVNENDGKICSKRD-AKAAPLVPPPAAE----------EYGWTA 71

Query: 64  DGLPI-HGSVMGEPVGRAQWETGLCACLGRHDEFCSSD---------------------- 123
           DGLP+ HGSV+GEP+ R QW +GL  CLGR+DEFCSSD                      
Sbjct: 72  DGLPVSHGSVIGEPIRRNQWNSGLFTCLGRNDEFCSSDLEVCLLGSVAPCVLYGTNAERL 131

Query: 124 -----------------------------------------------LEGNCEALHRSCG 180
                                                          LEG+ EA++RSCG
Sbjct: 132 GSAPGTFSNHCLTYLGLYFVGNSLFGWNCLAPWFSYSSRSAIRRKFNLEGSFEAMNRSCG 191

[Close]

BLAST of Carg15281-RA vs. TAIR10
Match: AT3G18470.1 (PLAC8 family protein)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-05
Identity = 37/128 (28.91%), Postives = 47/128 (36.72%), Query Frame = 0


Query: 81  QWETGLCACLGRHDE-----FCSSDLEGNCEAL----HRSCGCCGL------------CV 140
           QW +GL +C+   +      FC     G    +       CG CG+            C+
Sbjct: 4   QWTSGLFSCMEDSETACLTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCL 63

Query: 141 EDEVQREHCES--------VCDFATHVFCHTCALCQEGRELRRR--MPHPGFNARPVLVM 178
                R    S          D  TH FC  CALCQE REL+ R   P  G++      M
Sbjct: 64  FSCTYRTKIRSKFGLPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQRTM 123

[Close]

BLAST of Carg15281-RA vs. TAIR10
Match: AT2G40935.1 (PLAC8 family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 21/46 (45.65%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 111 SCGCCGLCVEDEVQREHCESVC-DFATHVFCHTCALCQEGRELRRR 156
           SC  CG       +    E+ C DF TH FCH CA+CQE RE+R +
Sbjct: 119 SCYACGYRKSLRAKYNLQEAPCGDFVTHFFCHLCAICQEYREIREQ 164

[Close]

BLAST of Carg15281-RA vs. Swiss-Prot
Match: sp|B4FUS3|CNR8_MAIZE (Cell number regulator 8 OS=Zea mays OX=4577 GN=CNR8 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-31
Identity = 80/197 (40.61%), Postives = 93/197 (47.21%), Query Frame = 0


Query: 63  ADGLPIHGSVMGEPVG--------RAQWETGLCACLGRHDEFCSSD-------------- 122
           ADG+P+   VMGEPV         R  W +G+ +CLGR+DEFCSSD              
Sbjct: 40  ADGVPV---VMGEPVSAHAFGGVPRESWNSGILSCLGRNDEFCSSDVEVCLLGTVAPCVL 99

Query: 123 -------------------------------------------------------LEGNC 182
                                                                  LEG+ 
Sbjct: 100 YGSNVERLAAGQGTFANSCLPYTGLYLLGNSLFGWNCLAPWFSHPTRTAIRQRYNLEGSF 159

[Close]

BLAST of Carg15281-RA vs. Swiss-Prot
Match: sp|D9HP26|CNR10_MAIZE (Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 38/146 (26.03%), Postives = 51/146 (34.93%), Query Frame = 0


Query: 63  ADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSS------DLEGNCEALHR---SCG 122
           A   P+ G  +G P   +QW +GL  C       C +            E + R   SCG
Sbjct: 12  AGAAPVTGFPVGGPAASSQWSSGLLDCFDDCGLCCLTCWCPCITFGRVAEIVDRGATSCG 71

Query: 123 CCGLCVEDEVQREHCESV--------------------CDFATHVFCHTCALCQEGRELR 180
             G           C+ +                    CD   H  C  CALCQ+ +EL+
Sbjct: 72  TAGALYAVLAYFTGCQWIYSCTYRAKMRAQLGLPETPCCDCLVHFCCEPCALCQQYKELK 131

[Close]

BLAST of Carg15281-RA vs. Swiss-Prot
Match: sp|B4FF80|CNR5_MAIZE (Cell number regulator 5 OS=Zea mays OX=4577 GN=CNR5 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-04
Identity = 26/68 (38.24%), Postives = 35/68 (51.47%), Query Frame = 0


Query: 111 SCGCCGLCVEDEVQREHCESVC-DFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVM 170
           +C  CG       +    E+ C D  TH+FCH CA+CQE RE+R R    G  + P   +
Sbjct: 117 ACYACGYRSALRTKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER---TGSGSSPAPNV 176

Query: 171 IPPAEQSM 178
            PP  Q+M
Sbjct: 177 TPPPVQTM 181

[Close]

BLAST of Carg15281-RA vs. Swiss-Prot
Match: sp|D9HP19|CNR3_MAIZE (Cell number regulator 3 OS=Zea mays OX=4577 GN=CNR3 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-04
Identity = 28/59 (47.46%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 129 ESVC-DFATHVFCHTCALCQEGRELRRRMPHP----GFNARPV---LVMIPPAEQSMGR 180
           E+ C DF  H+ C  CALCQE REL+ R   P     FNA+     + M PPA Q MGR
Sbjct: 109 EAPCADFLVHLCCLHCALCQEYRELKARGYEPVLGWEFNAQRAAAGVAMCPPASQGMGR 167

[Close]

BLAST of Carg15281-RA vs. TrEMBL
Match: tr|A0A1S3BLN1|A0A1S3BLN1_CUCME (cell number regulator 8 OS=Cucumis melo OX=3656 GN=LOC103491200 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.8e-73
Identity = 158/251 (62.95%), Postives = 163/251 (64.94%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDYG 60
           MANG+NLEESSPLLGKVVE ADEKDT R ST        XXXXXXXXXXXX    G DYG
Sbjct: 1   MANGDNLEESSPLLGKVVENADEKDTLRSSTXXXXXXXXXXXXXXXXXXXXXRDGGSDYG 60

Query: 61  WTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD-------------------- 120
           WTADGLP+HGSV+GEPVGRAQWET LCAC+GRHDEFCSSD                    
Sbjct: 61  WTADGLPVHGSVVGEPVGRAQWETDLCACIGRHDEFCSSDLEVCLLGSVAPCILYGTNAE 120

Query: 121 --------------------------------------------------LEGNCEALHR 180
                                                             LEGNCEALHR
Sbjct: 121 RLGSSTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTYPTRTAIRRMFNLEGNCEALHR 180

Query: 181 SCGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVLVMI 182
           SCGCCGLCVEDEVQREHCESVCDFATH+FCHTCALCQEGRELRRRMPHPGFNARPVLVMI
Sbjct: 181 SCGCCGLCVEDEVQREHCESVCDFATHIFCHTCALCQEGRELRRRMPHPGFNARPVLVMI 240

[Close]

BLAST of Carg15281-RA vs. TrEMBL
Match: tr|A0A0A0KH41|A0A0A0KH41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444990 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.9e-68
Identity = 148/254 (58.27%), Postives = 153/254 (60.24%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVEKADEKDTHRISTG---DRADAVPXXXXXXXXXXXXNGGDGC 60
           MANGENLEESSPLLGKVV  AD KD+   ST           XXXXXX      N     
Sbjct: 1   MANGENLEESSPLLGKVVANADHKDSLPTSTAPXXXXXXXXXXXXXXXKHMDEDNRDGRS 60

Query: 61  DYGWTADGLPIHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD----------------- 120
           DY WTADGLP+HGSV+GEP+GRAQWET LCAC+GRHDEFCSSD                 
Sbjct: 61  DYAWTADGLPVHGSVLGEPIGRAQWETDLCACIGRHDEFCSSDLEVCLLGSVAPCILYGT 120

Query: 121 -----------------------------------------------------LEGNCEA 180
                                                                LEGNCEA
Sbjct: 121 NAERVVSSTPGTFANHCMSYSGLYLIGTSFFGWNCLAPWFTYPTRTAIRRMFNLEGNCEA 180

Query: 181 LHRSCGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVL 182
           LHRSCGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVL
Sbjct: 181 LHRSCGCCGLCVEDEVQREHCESVCDFATHVFCHTCALCQEGRELRRRMPHPGFNARPVL 240

[Close]

BLAST of Carg15281-RA vs. TrEMBL
Match: tr|A0A0D2QX05|A0A0D2QX05_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G419400 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-52
Identity = 119/251 (47.41%), Postives = 135/251 (53.78%), Query Frame = 0


Query: 1   MANGENLEESSPLLGKVVE-KADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDY 60
           MAN  NLEESSPLL K V  + DEK    ++      A P                G  +
Sbjct: 1   MANNNNLEESSPLLSKQVSVEEDEKKNLNVNNSTDVAASPA------------ARTGAGF 60

Query: 61  GWTADGLP-IHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD------------------ 120
           GWTADGLP +HGSV+GEP+GR+QW++ L ACLGR+DEFCSSD                  
Sbjct: 61  GWTADGLPLVHGSVVGEPMGRSQWDSSLLACLGRNDEFCSSDVEVCLLGSVAPCVLYGSN 120

Query: 121 ---------------------------------------------------LEGNCEALH 180
                                                              LEG CEAL+
Sbjct: 121 VERLGSAPGTFANHCLPYSGLYLIGNSFFGWNCLAPWFSYPTRTAIRRKFNLEGTCEALN 180

[Close]

BLAST of Carg15281-RA vs. TrEMBL
Match: tr|A0A1Q3BLY0|A0A1Q3BLY0_CEPFO (PLAC8 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12367 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-52
Identity = 121/251 (48.21%), Postives = 137/251 (54.58%), Query Frame = 0


Query: 1   MANG--ENLEESSPLLGKVVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCD 60
           MAN   +  EESSPLL K VE+A+ K  +   T  R+   P              G GC 
Sbjct: 1   MANNSDKKYEESSPLLNKPVEEAENKSNNVSDT--RSTVSPKIQEAPV------AGAGC- 60

Query: 61  YGWTADGLPI-HGSVMGEPVGRAQWETGLCACLGRHDEFCSSD----------------- 120
            GWTADGLP+ HGSVMGEP+GRA W++ L ACLGR+DEFCSSD                 
Sbjct: 61  -GWTADGLPLGHGSVMGEPMGRAHWDSNLFACLGRNDEFCSSDLEVCLLGSVAPCVLYGS 120

Query: 121 ----------------------------------------------------LEGNCEAL 180
                                                               LEG CE+L
Sbjct: 121 NVERLGSTPGTFANHCLSYSGLYLIGNSFFGWNCLAPWFSYPSRSAIRRRFNLEGTCESL 180

[Close]

BLAST of Carg15281-RA vs. TrEMBL
Match: tr|A0A1U8M3Y6|A0A1U8M3Y6_GOSHI (cell number regulator 8-like OS=Gossypium hirsutum OX=3635 GN=LOC107933735 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 118/251 (47.01%), Postives = 134/251 (53.39%), Query Frame = 0


Query: 1   MANGENLEESSPLLGK-VVEKADEKDTHRISTGDRADAVPXXXXXXXXXXXXNGGDGCDY 60
           MAN  NLEESSPLL K V  + DEK    ++      A P                G  +
Sbjct: 1   MANNNNLEESSPLLSKHVGVEEDEKKNLNVNNSTDVAASP------------EARTGAGF 60

Query: 61  GWTADGLP-IHGSVMGEPVGRAQWETGLCACLGRHDEFCSSD------------------ 120
           GWTADGLP +HGSV+GEP+GR+QW++ L ACLGR+DEFCSSD                  
Sbjct: 61  GWTADGLPLVHGSVVGEPMGRSQWDSSLLACLGRNDEFCSSDVEVCLLGSVAPCVLYGSN 120

Query: 121 ---------------------------------------------------LEGNCEALH 180
                                                              LEG CEAL+
Sbjct: 121 VERLGSAPGTFANHCLPYSGLYLIGNSFFGWNCLAPWFSYSTRTAIRRKFNLEGTCEALN 180

The following BLAST results are available for this feature:

BLAST of Carg15281-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926040.1	4.3e-88	72.40	cell number regulator 8-like [Cucurbita moschata]	[more]
XP_022979164.1	2.1e-87	67.20	cell number regulator 8-like [Cucurbita maxima]	[more]
XP_023543087.1	2.1e-87	67.20	cell number regulator 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963293.1	2.4e-75	59.60	cell number regulator 8-like [Cucurbita moschata]	[more]
XP_023518870.1	2.4e-75	59.60	cell number regulator 8-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg15281-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT2G37110.1	1.4e-45	42.28	PLAC8 family protein	[more]
AT3G18470.1	7.2e-05	28.91	PLAC8 family protein	[more]
AT2G40935.1	1.2e-04	45.65	PLAC8 family protein	[more]

BLAST of Carg15281-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B4FUS3\|CNR8_MAIZE	1.1e-31	40.61	Cell number regulator 8 OS=Zea mays OX=4577 GN=CNR8 PE=2 SV=1	[more]
sp\|D9HP26\|CNR10_MAIZE	1.5e-04	26.03	Cell number regulator 10 OS=Zea mays OX=4577 GN=CNR10 PE=2 SV=1	[more]
sp\|B4FF80\|CNR5_MAIZE	1.5e-04	38.24	Cell number regulator 5 OS=Zea mays OX=4577 GN=CNR5 PE=2 SV=1	[more]
sp\|D9HP19\|CNR3_MAIZE	4.5e-04	47.46	Cell number regulator 3 OS=Zea mays OX=4577 GN=CNR3 PE=2 SV=1	[more]

BLAST of Carg15281-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLN1\|A0A1S3BLN1_CUCME	9.8e-73	62.95	cell number regulator 8 OS=Cucumis melo OX=3656 GN=LOC103491200 PE=4 SV=1	[more]
tr\|A0A0A0KH41\|A0A0A0KH41_CUCSA	1.9e-68	58.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444990 PE=4 SV=1	[more]
tr\|A0A0D2QX05\|A0A0D2QX05_GOSRA	2.5e-52	47.41	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G419400 PE=4 ...	[more]
tr\|A0A1Q3BLY0\|A0A1Q3BLY0_CEPFO	4.3e-52	48.21	PLAC8 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12...	[more]
tr\|A0A1U8M3Y6\|A0A1U8M3Y6_GOSHI	1.4e-50	47.01	cell number regulator 8-like OS=Gossypium hirsutum OX=3635 GN=LOC107933735 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006461	PLAC_motif_containing

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg15281	Carg15281	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15281-RA.CDS.2	Carg15281-RA.CDS.2	CDS
Carg15281-RA.CDS.1	Carg15281-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg15281-RA.exon.2	Carg15281-RA.exon.2	exon
Carg15281-RA.exon.1	Carg15281-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg15281-RA	Carg15281-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..32
None	No IPR available	PANTHER	PTHR15907:SF91	SUBFAMILY NOT NAMED	coord: 49..102
None	No IPR available	PANTHER	PTHR15907:SF91	SUBFAMILY NOT NAMED	coord: 101..180
IPR006461	PLAC8 motif-containing protein	PANTHER	PTHR15907	FAMILY NOT NAMED	coord: 101..180 coord: 49..102