Carg14373-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14373-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_040 : 760071 .. 761022 (-)
Sequence length	270

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGGTTTAACGGGTACCCATAAACTAGAAATTCCATTCTGATTTGTTGAGATCGTCTCTTTCTCCTACTTTGCGAGTCTGAATCTTCTCTTCATCTACCCAACACGGAGTTTAATGCACCAAAACCCTAATTCCTGTTGCTGGAATGTGTTTTTGGTGTGTAATTTCTGTTATTTACTTGATTCTTATGTAATTTTTAATTACTATGGCTTGCTGTTGATTCATGTGGTGTGTGCTTTTGCTTTTTATATTTGGATCTATGTTGGTTTTGTTTCCATTTCGGGATCTGAGTTTGGCTCTTTGATTTATTAATGGAAAGTTGTGTGTCTTGCTTTCCTTCATTTTGGTTCTTGTTGCTGGGAATTTCAGGAAATGGATGATGATAATCTCGAATATTTGTGTGTGGATTTGTTGTGAGATTCATTTTTTGATGCTTGTTTGATGTGATGGATCTTTGACTCGTGTTTGCAGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGTAGAAGAACTTTTCCGCAATTGGGGTTCGACATTGCTCACAATCAGTTCTTGGCTTCTGATCCGTGATTGCGCATCCAAATACGGTGCCTTCGATCTGAAATTCCCATTTTGATCGGCTTCTGTACCACTAACTTGTGTTTCTTCTTCTAACATTCTAATCTGGCAGTACGTTATGTGACATATTCGTTTATAATTGGAAGCATAAGTAGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTAGGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

mRNA sequence

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Coding sequence (CDS)

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Protein sequence

MERGAYNAINTHAPIDPASGSLETEFLTIDRAGLVAFKFGTSMIVLIARIHTNLYRRIRNVVMLYALLRDLNQRRSPFRVVLSWIIEGT

Homology

[Close]

BLAST of Carg14373-RA vs. NCBI nr
Match: XP_022945429.1 (probable methyltransferase PMT5 [Cucurbita moschata] >XP_022945430.1 probable methyltransferase PMT5 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 63 MLYALLRDLNQRRSPFRVVLSWIIEGT 90
          MLYALLRDLN+RR PFRVVL+WIIEGT
Sbjct: 1  MLYALLRDLNRRRFPFRVVLNWIIEGT 27

[Close]

BLAST of Carg14373-RA vs. NCBI nr
Match: XP_023541770.1 (probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo] >XP_023541771.1 probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 63 MLYALLRDLNQRRSPFRVVLSWIIEGT 90
          MLYALLRDLN+RR PFRVVL+WIIEGT
Sbjct: 1  MLYALLRDLNRRRFPFRVVLNWIIEGT 27

The following BLAST results are available for this feature:

BLAST of Carg14373-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945429.1	9.3e-04	88.89	probable methyltransferase PMT5 [Cucurbita moschata] >XP_022945430.1 probable me...	[more]
XP_023541770.1	9.3e-04	88.89	probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo] >XP_023541771.1 pro...	[more]

BLAST of Carg14373-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14373-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14373-RA vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg14373	Carg14373	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg14373-RA	Carg14373-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14373-RA.CDS.4	Carg14373-RA.CDS.4	CDS
Carg14373-RA.CDS.3	Carg14373-RA.CDS.3	CDS
Carg14373-RA.CDS.2	Carg14373-RA.CDS.2	CDS
Carg14373-RA.CDS.1	Carg14373-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg14373-RA.exon.4	Carg14373-RA.exon.4	exon
Carg14373-RA.exon.3	Carg14373-RA.exon.3	exon
Carg14373-RA.exon.2	Carg14373-RA.exon.2	exon
Carg14373-RA.exon.1	Carg14373-RA.exon.1	exon