Carg14373 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14373
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_040 : 760071 .. 761022 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGGTTTAACGGGTACCCATAAACTAGAAATTCCATTCTGATTTGTTGAGATCGTCTCTTTCTCCTACTTTGCGAGTCTGAATCTTCTCTTCATCTACCCAACACGGAGTTTAATGCACCAAAACCCTAATTCCTGTTGCTGGAATGTGTTTTTGGTGTGTAATTTCTGTTATTTACTTGATTCTTATGTAATTTTTAATTACTATGGCTTGCTGTTGATTCATGTGGTGTGTGCTTTTGCTTTTTATATTTGGATCTATGTTGGTTTTGTTTCCATTTCGGGATCTGAGTTTGGCTCTTTGATTTATTAATGGAAAGTTGTGTGTCTTGCTTTCCTTCATTTTGGTTCTTGTTGCTGGGAATTTCAGGAAATGGATGATGATAATCTCGAATATTTGTGTGTGGATTTGTTGTGAGATTCATTTTTTGATGCTTGTTTGATGTGATGGATCTTTGACTCGTGTTTGCAGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGTAGAAGAACTTTTCCGCAATTGGGGTTCGACATTGCTCACAATCAGTTCTTGGCTTCTGATCCGTGATTGCGCATCCAAATACGGTGCCTTCGATCTGAAATTCCCATTTTGATCGGCTTCTGTACCACTAACTTGTGTTTCTTCTTCTAACATTCTAATCTGGCAGTACGTTATGTGACATATTCGTTTATAATTGGAAGCATAAGTAGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTAGGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

mRNA sequence

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Coding sequence (CDS)

ATGGAAAGGGGGGCATATAATGCCATAAATACACATGCTCCGATTGATCCCGCTAGTGGCTCTTTGGAAACTGAATTTCTAACCATTGATCGAGCTGGATTGGTCGCATTTAAGTTCGGGACTTCAATGATTGTTTTGATTGCTCGTATTCATACCAATCTATATAGAAGAATACGCAACGTAGTTATGCTTTATGCTCTGCTTCGAGATTTAAACCAAAGGCGCTCCCCATTTAGAGTGGTTCTGAGCTGGATTATTGAGGGGACTTGA

Protein sequence

MERGAYNAINTHAPIDPASGSLETEFLTIDRAGLVAFKFGTSMIVLIARIHTNLYRRIRNVVMLYALLRDLNQRRSPFRVVLSWIIEGT

Homology

[Close]

BLAST of Carg14373 vs. NCBI nr
Match: XP_022945429.1 (probable methyltransferase PMT5 [Cucurbita moschata] >XP_022945430.1 probable methyltransferase PMT5 [Cucurbita moschata])

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 63 MLYALLRDLNQRRSPFRVVLSWIIEGT 90
          MLYALLRDLN+RR PFRVVL+WIIEGT
Sbjct: 1  MLYALLRDLNRRRFPFRVVLNWIIEGT 27

[Close]

BLAST of Carg14373 vs. NCBI nr
Match: XP_023541770.1 (probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo] >XP_023541771.1 probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 52.4 bits (124), Expect = 9.3e-04
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 63 MLYALLRDLNQRRSPFRVVLSWIIEGT 90
          MLYALLRDLN+RR PFRVVL+WIIEGT
Sbjct: 1  MLYALLRDLNRRRFPFRVVLNWIIEGT 27

The following BLAST results are available for this feature:

BLAST of Carg14373 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945429.1	9.3e-04	88.89	probable methyltransferase PMT5 [Cucurbita moschata] >XP_022945430.1 probable me...	[more]
XP_023541770.1	9.3e-04	88.89	probable methyltransferase PMT5 [Cucurbita pepo subsp. pepo] >XP_023541771.1 pro...	[more]

BLAST of Carg14373 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14373 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14373 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14373-RA	Carg14373-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14373	CmoCh04G017800	Cucurbita moschata (Rifu)	carcmoB0343

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14373	Silver-seed gourd	carcarB110
Carg14373	Silver-seed gourd	carcarB282
Carg14373	Cucumber (Gy14) v2	carcgybB0256
Carg14373	Cucumber (Gy14) v2	carcgybB0259
Carg14373	Cucumber (Gy14) v1	carcgyB0287
Carg14373	Cucurbita maxima (Rimu)	carcmaB0338
Carg14373	Cucurbita maxima (Rimu)	carcmaB0339
Carg14373	Cucurbita moschata (Rifu)	carcmoB0340
Carg14373	Cucurbita pepo (Zucchini)	carcpeB0342
Carg14373	Cucurbita pepo (Zucchini)	carcpeB0344
Carg14373	Wild cucumber (PI 183967)	carcpiB0273
Carg14373	Wild cucumber (PI 183967)	carcpiB0276
Carg14373	Cucumber (Chinese Long) v2	carcuB0269
Carg14373	Cucumber (Chinese Long) v2	carcuB0272
Carg14373	Cucumber (Chinese Long) v3	carcucB0272
Carg14373	Cucumber (Chinese Long) v3	carcucB0275
Carg14373	Bottle gourd (USVL1VR-Ls)	carlsiB217
Carg14373	Melon (DHL92) v3.5.1	carmeB0244
Carg14373	Melon (DHL92) v3.5.1	carmeB0247
Carg14373	Melon (DHL92) v3.6.1	carmedB0253
Carg14373	Melon (DHL92) v3.6.1	carmedB0256
Carg14373	Watermelon (Charleston Gray)	carwcgB0234
Carg14373	Watermelon (Charleston Gray)	carwcgB0235
Carg14373	Watermelon (97103) v1	carwmB0231
Carg14373	Watermelon (97103) v2	carwmbB0246
Carg14373	Watermelon (97103) v2	carwmbB0247
Carg14373	Watermelon (97103) v2	carwmbB0249
Carg14373	Wax gourd	carwgoB0309
Carg14373	Wax gourd	carwgoB0310