Carg13449-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13449-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	thylakoid lumenal 19 kDa protein, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_049 : 546931 .. 548186 (-)
Sequence length	1164

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGTATTTCAATTTCGCTGTTGAAATCTCTAAATTAAAGAGGTTTAACGGAAAATTTCGTTTCGAAAATCGATTTTATGATCTTAATTTTGCAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

mRNA sequence

CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

Coding sequence (CDS)

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

Protein sequence

MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY

Homology

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BLAST of Carg13449-RA vs. NCBI nr
Match: XP_022959905.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 479.9 bits (1234), Expect = 5.1e-132
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

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BLAST of Carg13449-RA vs. NCBI nr
Match: XP_023513479.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477.2 bits (1227), Expect = 3.3e-131
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

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BLAST of Carg13449-RA vs. NCBI nr
Match: XP_023004635.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128
Identity = 242/249 (97.19%), Postives = 243/249 (97.59%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

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BLAST of Carg13449-RA vs. NCBI nr
Match: XP_022146111.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 194/249 (77.91%), Postives = 210/249 (84.34%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLA FS                  PL +  +P LQS P   L +L A  SAIAV
Sbjct: 1   MATAISPLAVFS-XXXXXXXXXXXXXXXXXPLSRLHLPTLQSKPL--LPALAAHASAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILST  PSLAD G AFNVYYGTAASAANYGG+GGNASKKD+AEY+YDVP+GWKERLVS
Sbjct: 61  AAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDTAEYVYDVPDGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA+ 
Sbjct: 121 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADS 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            S+EEKKDENGQ+YYVYEIDG+G HSLISVTCAKNKLYAHFVNAPTPEW+RD+++LRHVH
Sbjct: 181 VSSEEKKDENGQVYYVYEIDGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRELLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKT+GSY
Sbjct: 241 ESFKTIGSY 246

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BLAST of Carg13449-RA vs. NCBI nr
Match: XP_004135924.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hypothetical protein Csa_7G428280 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 2.6e-96
Identity = 191/250 (76.40%), Postives = 200/250 (80.00%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNP-SGPLSSLTAPISAIA 60
           MATAI+PLAF +     +TG   PKP Q   LPKP IP+LQS P                
Sbjct: 1   MATAIAPLAFLT-----STGTTAPKPPQASSLPKPQIPILQSKPXXXXXXXXXXXXXXXX 60

Query: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120
                       AD G AFNVYYGTAASAANYGG GGNA+KKD+AEYIYDVPEGWKERLV
Sbjct: 61  XXXXXXXXXXXXADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 GFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240
            F AEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 250
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

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BLAST of Carg13449-RA vs. TAIR10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 231.5 bits (589), Expect = 5.7e-61
Identity = 109/140 (77.86%), Postives = 122/140 (87.14%), Query Frame = 0


Query: 109 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSD 168
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAP+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 169 VNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 228
           V LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 229 WDRDQDMLRHVHESFKTVGS 249
           W+RD D L H+ +SFKTV S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

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BLAST of Carg13449-RA vs. Swiss-Prot
Match: sp|P82658|TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-68
Identity = 131/216 (60.65%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 35  PLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTP--PSLADAGGAFNVYYGTAASAANYG 94
           P++P   ++  G     T+  +A+A  ++L+  P  P+  +    + +YYGTA       
Sbjct: 18  PIVPKAIASRLG-----TSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAXXXXXXX 77

Query: 95  GFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIR 154
               N+ +K SAEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG R
Sbjct: 78  XXXXNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFR 137

Query: 155 QLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTC 214
           QLAP+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC
Sbjct: 138 QLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTC 197

Query: 215 AKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGS 249
           +KN+LYAHFVNAP PEW+RD D L H+ +SFKTV S
Sbjct: 198 SKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

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BLAST of Carg13449-RA vs. TrEMBL
Match: tr|A0A0A0K624|A0A0A0K624_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.7e-96
Identity = 191/250 (76.40%), Postives = 200/250 (80.00%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNP-SGPLSSLTAPISAIA 60
           MATAI+PLAF +     +TG   PKP Q   LPKP IP+LQS P                
Sbjct: 1   MATAIAPLAFLT-----STGTTAPKPPQASSLPKPQIPILQSKPXXXXXXXXXXXXXXXX 60

Query: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120
                       AD G AFNVYYGTAASAANYGG GGNA+KKD+AEYIYDVPEGWKERLV
Sbjct: 61  XXXXXXXXXXXXADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 GFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240
            F AEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 250
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of Carg13449-RA vs. TrEMBL
Match: tr|A0A1S3CES2|A0A1S3CES2_CUCME (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 6.2e-94
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 64  LSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVE 123
           L+T PPSLAD G AFNVYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKERLVSKVE
Sbjct: 65  LNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLVSKVE 124

Query: 124 KGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSA 183
           KGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE F A
Sbjct: 125 KGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLA 184

Query: 184 EEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESF 243
           +EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHESF
Sbjct: 185 DEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESF 244

Query: 244 KTVGSY 250
           KTVGSY
Sbjct: 245 KTVGSY 250

[Close]

BLAST of Carg13449-RA vs. TrEMBL
Match: tr|A0A2P5AIB7|A0A2P5AIB7_PARAD (PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_329590 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 4.4e-84
Identity = 174/251 (69.32%), Postives = 200/251 (79.68%), Query Frame = 0


Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MAT  SP A FS  ++AT      +P  TP   K  +P+    P+ P  + T   S +A 
Sbjct: 1   MATIFSPSAIFSNSSSAT-----QRPPLTPXXXKTHLPI--PAPTKPPITTTLLASTLA- 60

Query: 61  AAILSTTP--PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERL 120
           A ILS+ P  PSLA A   + +YYGTAASAANYGG+GGN+SKKDSAEY+YDVP+GWKERL
Sbjct: 61  ATILSSAPTVPSLA-ADYPYQIYYGTAASAANYGGYGGNSSKKDSAEYVYDVPQGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKR EKEYLTFL+G RQLAP+DV+LNNLALSDV+LQD IASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLSGFRQLAPRDVVLNNLALSDVDLQDLIASA 180

Query: 181 EGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRH 240
           +  S+EEKKD+ GQ+YYVYEIDG   HSLISVTCAKNKLYAHFVNAPTPEW+ D+DMLRH
Sbjct: 181 DNVSSEEKKDDKGQLYYVYEIDGVAAHSLISVTCAKNKLYAHFVNAPTPEWNMDKDMLRH 240

Query: 241 VHESFKTVGSY 250
           VHESFKTVGS+
Sbjct: 241 VHESFKTVGSF 242

[Close]

BLAST of Carg13449-RA vs. TrEMBL
Match: tr|A0A0L9UII1|A0A0L9UII1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g009000 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 8.4e-83
Identity = 160/204 (78.43%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 47  PLSSLTAPISAIAVAAILSTTP-PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAE 106
           PL++LTA   A  +AAIL+T P PSLA    ++ VYYGTAASAANYG    N++KKDSAE
Sbjct: 38  PLTNLTA---AATIAAILTTAPLPSLAQESPSYQVYYGTAASAANYGXXXXNSNKKDSAE 97

Query: 107 YIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLA 166
           Y+YDVP GWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAPKDVILNNLA
Sbjct: 98  YVYDVPVGWKERLVSKVEKGTNGTDSEFYNPKKKAEKEYLTFLAGFRQLAPKDVILNNLA 157

Query: 167 LSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAP 226
           LSDV+LQD IA+A+  S+EE KD+ GQ+YYVYEIDG GTHSLISVTCAKNKLYAHFVNAP
Sbjct: 158 LSDVDLQDLIANADSLSSEEVKDDKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAP 217

Query: 227 TPEWDRDQDMLRHVHESFKTVGSY 250
           TPEW+RD+DMLRHVHESFKTVGS+
Sbjct: 218 TPEWNRDKDMLRHVHESFKTVGSF 238

[Close]

BLAST of Carg13449-RA vs. TrEMBL
Match: tr|A0A0S3SKD8|A0A0S3SKD8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G226700 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 8.4e-83
Identity = 160/204 (78.43%), Postives = 179/204 (87.75%), Query Frame = 0


Query: 47  PLSSLTAPISAIAVAAILSTTP-PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAE 106
           PL++LTA   A  +AAIL+T P PSLA    ++ VYYGTAASAANYG    N++KKDSAE
Sbjct: 38  PLTNLTA---AATIAAILTTAPLPSLAQESPSYQVYYGTAASAANYGXXXXNSNKKDSAE 97

Query: 107 YIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLA 166
           Y+YDVP GWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAPKDVILNNLA
Sbjct: 98  YVYDVPVGWKERLVSKVEKGTNGTDSEFYNPKKKAEKEYLTFLAGFRQLAPKDVILNNLA 157

Query: 167 LSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAP 226
           LSDV+LQD IA+A+  S+EE KD+ GQ+YYVYEIDG GTHSLISVTCAKNKLYAHFVNAP
Sbjct: 158 LSDVDLQDLIANADSLSSEEVKDDKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAP 217

Query: 227 TPEWDRDQDMLRHVHESFKTVGSY 250
           TPEW+RD+DMLRHVHESFKTVGS+
Sbjct: 218 TPEWNRDKDMLRHVHESFKTVGSF 238

The following BLAST results are available for this feature:

BLAST of Carg13449-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959905.1	5.1e-132	99.20	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata]	[more]
XP_023513479.1	3.3e-131	98.80	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_023004635.1	1.2e-128	97.19	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
XP_022146111.1	1.1e-97	77.91	thylakoid lumenal 19 kDa protein, chloroplastic [Momordica charantia]	[more]
XP_004135924.1	2.6e-96	76.40	PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KG...	[more]

BLAST of Carg13449-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G63540.1	5.7e-61	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

BLAST of Carg13449-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82658\|TL19_ARATH	2.1e-68	60.65	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg13449-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K624\|A0A0A0K624_CUCSA	1.7e-96	76.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1	[more]
tr\|A0A1S3CES2\|A0A1S3CES2_CUCME	6.2e-94	91.94	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P5AIB7\|A0A2P5AIB7_PARAD	4.4e-84	69.32	PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_329590 PE=4 SV=1	[more]
tr\|A0A0L9UII1\|A0A0L9UII1_PHAAN	8.4e-83	78.43	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g009000 PE...	[more]
tr\|A0A0S3SKD8\|A0A0S3SKD8_PHAAN	8.4e-83	78.43	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0019898	extrinsic component of membrane
GO:0009654	photosystem II oxygen evolving complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR016123	Mog1/PsbP_a/b/a-sand
IPR002683	PsbP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13449	Carg13449	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13449-RA	Carg13449-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13449-RA.three_prime_UTR.1	Carg13449-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13449-RA.CDS.2	Carg13449-RA.CDS.2	CDS
Carg13449-RA.CDS.1	Carg13449-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13449-RA.five_prime_UTR.1	Carg13449-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13449-RA.exon.2	Carg13449-RA.exon.2	exon
Carg13449-RA.exon.1	Carg13449-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 104..244 e-value: 9.8E-11 score: 41.9
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	G3DSA:3.40.1000.10		coord: 85..246 e-value: 1.7E-9 score: 39.4
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	SSF55724	Mog1p/PsbP-like	coord: 103..245
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 16..248
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 16..248