Carg13449 (gene) Silver-seed gourd

Overview
NameCarg13449
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionthylakoid lumenal 19 kDa protein, chloroplastic
LocationCucurbita_argyrosperma_scaffold_049 : 546931 .. 548186 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGTATTTCAATTTCGCTGTTGAAATCTCTAAATTAAAGAGGTTTAACGGAAAATTTCGTTTCGAAAATCGATTTTATGATCTTAATTTTGCAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

mRNA sequence

CAAGATAAACCAGAAACCCAATTCCACGAAAATCAATCGCTATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAGCTTTTGTGGTGTGGTTGGAGATTTGATCGGAGAGAGGTCTGTTGCTGTGTATGAATTGGTTGTTACATTCTTATTCTTGAATGCAGGAAATCTACTGGTTTTTCACCATAATTTCATCACCAATTTTGATCTTAGAAACCGAAAGTTTTCAGAGGATGATTAAATGGTTTGAATTGATGAACATTTCTAAGCTGATCAGGAGGATTGTTATGTTGGATGAAATTAGGTGATCACTAGTTTATAATCCTATAGTGGTACGAGGTCTTTTGGGAAGTCCAAAACAAAGGTACGGCACGATAGCTTATACTCGAGTAGACAATATCATATCATTGTAGAGAGTCGTGTTCAACTAAGTCTATTTTCTTTGCAATCA

Coding sequence (CDS)

ATGGCCACAGCAATCTCACCACTGGCGTTCTTCTCCGCCGGCGCCGCGGCAACGACCGGCGCGATCGTCCCAAAGCCGTCGCAAACTCCGCCGCTACCAAAGCCCCTGATTCCCGTTCTTCAATCTAATCCCTCTGGCCCACTTTCCTCGTTAACTGCCCCCATCTCCGCCATCGCCGTAGCCGCGATCTTGAGCACCACTCCACCGTCACTGGCTGACGCCGGCGGCGCTTTCAATGTCTATTATGGAACCGCCGCCAGTGCGGCCAATTACGGCGGCTTCGGCGGCAACGCAAGCAAGAAAGACTCGGCAGAATACATCTACGACGTGCCGGAAGGCTGGAAGGAGCGATTAGTGTCCAAGGTCGAAAAAGGCACGAATGGAACCGACAGCGAATTTTACAATCCGAAGAAACGGAAGGAGAAAGAATACCTAACTTTCCTGGCTGGAATCCGGCAATTAGCGCCGAAGGATGTGATTCTGAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCTGAGGGCTTCTCGGCGGAGGAAAAGAAGGATGAGAATGGACAGATTTATTACGTGTATGAGATCGACGGCGCTGGAACTCACAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCGCCGACGCCGGAGTGGGATCGGGACCAGGATATGCTCCGGCATGTTCATGAGTCGTTCAAGACGGTCGGATCGTATTAG

Protein sequence

MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGSY
Homology
[Close]
BLAST of Carg13449 vs. NCBI nr
Match: XP_022959905.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 479.9 bits (1234), Expect = 5.1e-132
Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSL+APISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            SAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]
BLAST of Carg13449 vs. NCBI nr
Match: XP_023513479.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 477.2 bits (1227), Expect = 3.3e-131
Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSG LSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGSLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPPSLAD GGAF+VYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPSLADTGGAFSVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]
BLAST of Carg13449 vs. NCBI nr
Match: XP_023004635.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-128
Identity = 242/249 (97.19%), Postives = 243/249 (97.59%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIP LQSN  GPLSSLTAPISAIAV
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPFLQSNTPGPLSSLTAPISAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILSTTPP LA  GGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS
Sbjct: 61  AAILSTTPPLLAATGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
           FSAEE+KDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH
Sbjct: 181 FSAEERKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKTVGSY
Sbjct: 241 ESFKTVGSY 249

[Close]
BLAST of Carg13449 vs. NCBI nr
Match: XP_022146111.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 194/249 (77.91%), Postives = 210/249 (84.34%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MATAISPLA FS                  PL +  +P LQS P   L +L A  SAIAV
Sbjct: 1   MATAISPLAVFS-XXXXXXXXXXXXXXXXXPLSRLHLPTLQSKPL--LPALAAHASAIAV 60

Query: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
           AAILST  PSLAD G AFNVYYGTAASAANYGG+GGNASKKD+AEY+YDVP+GWKERLVS
Sbjct: 61  AAILSTASPSLADTGAAFNVYYGTAASAANYGGYGGNASKKDTAEYVYDVPDGWKERLVS 120

Query: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA+ 
Sbjct: 121 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASADS 180

Query: 181 FSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
            S+EEKKDENGQ+YYVYEIDG+G HSLISVTCAKNKLYAHFVNAPTPEW+RD+++LRHVH
Sbjct: 181 VSSEEKKDENGQVYYVYEIDGSGAHSLISVTCAKNKLYAHFVNAPTPEWNRDRELLRHVH 240

Query: 241 ESFKTVGSY 250
           ESFKT+GSY
Sbjct: 241 ESFKTIGSY 246

[Close]
BLAST of Carg13449 vs. NCBI nr
Match: XP_004135924.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hypothetical protein Csa_7G428280 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 2.6e-96
Identity = 191/250 (76.40%), Postives = 200/250 (80.00%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNP-SGPLSSLTAPISAIA 60
           MATAI+PLAF +     +TG   PKP Q   LPKP IP+LQS P                
Sbjct: 1   MATAIAPLAFLT-----STGTTAPKPPQASSLPKPQIPILQSKPXXXXXXXXXXXXXXXX 60

Query: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120
                       AD G AFNVYYGTAASAANYGG GGNA+KKD+AEYIYDVPEGWKERLV
Sbjct: 61  XXXXXXXXXXXXADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 GFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240
            F AEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 250
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

[Close]
BLAST of Carg13449 vs. TAIR10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 231.5 bits (589), Expect = 5.7e-61
Identity = 109/140 (77.86%), Postives = 122/140 (87.14%), Query Frame = 0 

Query: 109 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSD 168
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAP+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 169 VNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 228
           V LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 229 WDRDQDMLRHVHESFKTVGS 249
           W+RD D L H+ +SFKTV S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

[Close]
BLAST of Carg13449 vs. Swiss-Prot
Match: sp|P82658|TL19_ARATH (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 260.4 bits (664), Expect = 2.1e-68
Identity = 131/216 (60.65%), Postives = 161/216 (74.54%), Query Frame = 0 

Query: 35  PLIPVLQSNPSGPLSSLTAPISAIAVAAILSTTP--PSLADAGGAFNVYYGTAASAANYG 94
           P++P   ++  G     T+  +A+A  ++L+  P  P+  +    + +YYGTA       
Sbjct: 18  PIVPKAIASRLG-----TSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAXXXXXXX 77

Query: 95  GFGGNASKKDSAEYIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIR 154
               N+ +K SAEY+YDVPEGWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG R
Sbjct: 78  XXXXNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFR 137

Query: 155 QLAPKDVILNNLALSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTC 214
           QLAP+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY+YEIDG G HSLI+VTC
Sbjct: 138 QLAPRDVILNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTC 197

Query: 215 AKNKLYAHFVNAPTPEWDRDQDMLRHVHESFKTVGS 249
           +KN+LYAHFVNAP PEW+RD D L H+ +SFKTV S
Sbjct: 198 SKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]
BLAST of Carg13449 vs. TrEMBL
Match: tr|A0A0A0K624|A0A0A0K624_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 1.7e-96
Identity = 191/250 (76.40%), Postives = 200/250 (80.00%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNP-SGPLSSLTAPISAIA 60
           MATAI+PLAF +     +TG   PKP Q   LPKP IP+LQS P                
Sbjct: 1   MATAIAPLAFLT-----STGTTAPKPPQASSLPKPQIPILQSKPXXXXXXXXXXXXXXXX 60

Query: 61  VAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLV 120
                       AD G AFNVYYGTAASAANYGG GGNA+KKD+AEYIYDVPEGWKERLV
Sbjct: 61  XXXXXXXXXXXXADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 GFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHV 240
            F AEEKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 250
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

[Close]
BLAST of Carg13449 vs. TrEMBL
Match: tr|A0A1S3CES2|A0A1S3CES2_CUCME (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 6.2e-94
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 64  LSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVSKVE 123
           L+T PPSLAD G AFNVYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKERLVSKVE
Sbjct: 65  LNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLVSKVE 124

Query: 124 KGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEGFSA 183
           KGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE F A
Sbjct: 125 KGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLA 184

Query: 184 EEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVHESF 243
           +EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHESF
Sbjct: 185 DEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESF 244

Query: 244 KTVGSY 250
           KTVGSY
Sbjct: 245 KTVGSY 250

[Close]
BLAST of Carg13449 vs. TrEMBL
Match: tr|A0A2P5AIB7|A0A2P5AIB7_PARAD (PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_329590 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 4.4e-84
Identity = 174/251 (69.32%), Postives = 200/251 (79.68%), Query Frame = 0 

Query: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLTAPISAIAV 60
           MAT  SP A FS  ++AT      +P  TP   K  +P+    P+ P  + T   S +A 
Sbjct: 1   MATIFSPSAIFSNSSSAT-----QRPPLTPXXXKTHLPI--PAPTKPPITTTLLASTLA- 60

Query: 61  AAILSTTP--PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERL 120
           A ILS+ P  PSLA A   + +YYGTAASAANYGG+GGN+SKKDSAEY+YDVP+GWKERL
Sbjct: 61  ATILSSAPTVPSLA-ADYPYQIYYGTAASAANYGGYGGNSSKKDSAEYVYDVPQGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKR EKEYLTFL+G RQLAP+DV+LNNLALSDV+LQD IASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLSGFRQLAPRDVVLNNLALSDVDLQDLIASA 180

Query: 181 EGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRH 240
           +  S+EEKKD+ GQ+YYVYEIDG   HSLISVTCAKNKLYAHFVNAPTPEW+ D+DMLRH
Sbjct: 181 DNVSSEEKKDDKGQLYYVYEIDGVAAHSLISVTCAKNKLYAHFVNAPTPEWNMDKDMLRH 240

Query: 241 VHESFKTVGSY 250
           VHESFKTVGS+
Sbjct: 241 VHESFKTVGSF 242

[Close]
BLAST of Carg13449 vs. TrEMBL
Match: tr|A0A0L9UII1|A0A0L9UII1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g009000 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 8.4e-83
Identity = 160/204 (78.43%), Postives = 179/204 (87.75%), Query Frame = 0 

Query: 47  PLSSLTAPISAIAVAAILSTTP-PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAE 106
           PL++LTA   A  +AAIL+T P PSLA    ++ VYYGTAASAANYG    N++KKDSAE
Sbjct: 38  PLTNLTA---AATIAAILTTAPLPSLAQESPSYQVYYGTAASAANYGXXXXNSNKKDSAE 97

Query: 107 YIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLA 166
           Y+YDVP GWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAPKDVILNNLA
Sbjct: 98  YVYDVPVGWKERLVSKVEKGTNGTDSEFYNPKKKAEKEYLTFLAGFRQLAPKDVILNNLA 157

Query: 167 LSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAP 226
           LSDV+LQD IA+A+  S+EE KD+ GQ+YYVYEIDG GTHSLISVTCAKNKLYAHFVNAP
Sbjct: 158 LSDVDLQDLIANADSLSSEEVKDDKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAP 217

Query: 227 TPEWDRDQDMLRHVHESFKTVGSY 250
           TPEW+RD+DMLRHVHESFKTVGS+
Sbjct: 218 TPEWNRDKDMLRHVHESFKTVGSF 238

[Close]
BLAST of Carg13449 vs. TrEMBL
Match: tr|A0A0S3SKD8|A0A0S3SKD8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G226700 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 8.4e-83
Identity = 160/204 (78.43%), Postives = 179/204 (87.75%), Query Frame = 0 

Query: 47  PLSSLTAPISAIAVAAILSTTP-PSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAE 106
           PL++LTA   A  +AAIL+T P PSLA    ++ VYYGTAASAANYG    N++KKDSAE
Sbjct: 38  PLTNLTA---AATIAAILTTAPLPSLAQESPSYQVYYGTAASAANYGXXXXNSNKKDSAE 97

Query: 107 YIYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLA 166
           Y+YDVP GWKERLVSKVEKGTNGTDSEFYNPKK+ EKEYLTFLAG RQLAPKDVILNNLA
Sbjct: 98  YVYDVPVGWKERLVSKVEKGTNGTDSEFYNPKKKAEKEYLTFLAGFRQLAPKDVILNNLA 157

Query: 167 LSDVNLQDQIASAEGFSAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAP 226
           LSDV+LQD IA+A+  S+EE KD+ GQ+YYVYEIDG GTHSLISVTCAKNKLYAHFVNAP
Sbjct: 158 LSDVDLQDLIANADSLSSEEVKDDKGQLYYVYEIDGVGTHSLISVTCAKNKLYAHFVNAP 217

Query: 227 TPEWDRDQDMLRHVHESFKTVGSY 250
           TPEW+RD+DMLRHVHESFKTVGS+
Sbjct: 218 TPEWNRDKDMLRHVHESFKTVGSF 238

The following BLAST results are available for this feature:
BLAST of Carg13449 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959905.15.1e-13299.20thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita moschata][more]
XP_023513479.13.3e-13198.80thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
XP_023004635.11.2e-12897.19thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima][more]
XP_022146111.11.1e-9777.91thylakoid lumenal 19 kDa protein, chloroplastic [Momordica charantia][more]
XP_004135924.12.6e-9676.40PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KG... [more]
BLAST of Carg13449 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G63540.15.7e-6177.86Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein[more]
BLAST of Carg13449 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P82658|TL19_ARATH2.1e-6860.65Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Carg13449 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K624|A0A0A0K624_CUCSA1.7e-9676.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1[more]
tr|A0A1S3CES2|A0A1S3CES2_CUCME6.2e-9491.94thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2P5AIB7|A0A2P5AIB7_PARAD4.4e-8469.32PsbP family OS=Parasponia andersonii OX=3476 GN=PanWU01x14_329590 PE=4 SV=1[more]
tr|A0A0L9UII1|A0A0L9UII1_PHAAN8.4e-8378.43Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g009000 PE... [more]
tr|A0A0S3SKD8|A0A0S3SKD8_PHAAN8.4e-8378.43Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PsbP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13449-RACarg13449-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 104..244
e-value: 9.8E-11
score: 41.9
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 85..246
e-value: 1.7E-9
score: 39.4
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILYSSF55724Mog1p/PsbP-likecoord: 103..245
NoneNo IPR availablePANTHERPTHR31407:SF20THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTICcoord: 16..248
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 16..248

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13449Cla015233Watermelon (97103) v1carwmB0448
Carg13449Csa7G428280Cucumber (Chinese Long) v2carcuB0484
Carg13449MELO3C023542Melon (DHL92) v3.5.1carmeB0455
Carg13449ClCG09G004240Watermelon (Charleston Gray)carwcgB0440
Carg13449CSPI07G19340Wild cucumber (PI 183967)carcpiB0489
Carg13449Cucsa.050250Cucumber (Gy14) v1carcgyB0519
Carg13449CmaCh08G005350Cucurbita maxima (Rimu)carcmaB0628
Carg13449CmaCh17G009500Cucurbita maxima (Rimu)carcmaB0625
Carg13449CmoCh17G009240Cucurbita moschata (Rifu)carcmoB0608
Carg13449CmoCh08G005260Cucurbita moschata (Rifu)carcmoB0610
Carg13449Lsi02G025820Bottle gourd (USVL1VR-Ls)carlsiB409
Carg13449Cp4.1LG17g08240Cucurbita pepo (Zucchini)carcpeB0632
Carg13449Cp4.1LG12g06800Cucurbita pepo (Zucchini)carcpeB0631
Carg13449MELO3C023542.2Melon (DHL92) v3.6.1carmedB0458
Carg13449CsaV3_7G031150Cucumber (Chinese Long) v3carcucB0486
Carg13449Cla97C09G166520Watermelon (97103) v2carwmbB0473
Carg13449Bhi09G000523Wax gourdcarwgoB0546
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13449Carg18679Silver-seed gourdcarcarB379
The following block(s) are covering this gene:
GeneOrganismBlock
Carg13449Silver-seed gourdcarcarB452
Carg13449Silver-seed gourdcarcarB453
Carg13449Silver-seed gourdcarcarB454
Carg13449Silver-seed gourdcarcarB455
Carg13449Cucumber (Gy14) v2carcgybB0460
Carg13449Cucumber (Gy14) v2carcgybB0461
Carg13449Cucurbita maxima (Rimu)carcmaB0624
Carg13449Cucurbita maxima (Rimu)carcmaB0626
Carg13449Cucurbita maxima (Rimu)carcmaB0627
Carg13449Cucurbita moschata (Rifu)carcmoB0607
Carg13449Cucurbita moschata (Rifu)carcmoB0609
Carg13449Cucurbita pepo (Zucchini)carcpeB0633
Carg13449Cucurbita pepo (Zucchini)carcpeB0634
Carg13449Cucurbita pepo (Zucchini)carcpeB0635
Carg13449Wild cucumber (PI 183967)carcpiB0488
Carg13449Cucumber (Chinese Long) v2carcuB0483
Carg13449Cucumber (Chinese Long) v3carcucB0485
Carg13449Bottle gourd (USVL1VR-Ls)carlsiB410
Carg13449Melon (DHL92) v3.5.1carmeB0457
Carg13449Melon (DHL92) v3.6.1carmedB0460
Carg13449Watermelon (Charleston Gray)carwcgB0442
Carg13449Watermelon (Charleston Gray)carwcgB0443
Carg13449Watermelon (97103) v1carwmB0451
Carg13449Watermelon (97103) v1carwmB0452
Carg13449Watermelon (97103) v2carwmbB0471
Carg13449Watermelon (97103) v2carwmbB0472
Carg13449Watermelon (97103) v2carwmbB0475
Carg13449Wax gourdcarwgoB0542
Carg13449Wax gourdcarwgoB0544