Carg13440-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13440-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nuclear transcription factor Y subunit A-9-like
Location	Cucurbita_argyrosperma_scaffold_049 : 484728 .. 486793 (-)
Sequence length	1313

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATAGAACTAGGCAAGTGTGAAATCAAAAATCGGTTGGGGAAGAGAACGAAACATTCTTTTTAAGGGCGTGTAAACCTCTCCGTAGTAGATGCATTTTTAAAACGTTGAAGGAAGCCCAAAAGAAAAATCAAAAGAAGACAATATTTGCTAGTGATAGGCTTGGGCCATTACAGTAAGATCGTGTCCCCCTGTTGTTTATGCGCTTGAATCTTCAGATGAACAATAATTTAAACCCTCGACTACTTTGGAGAAGGCTCGGACTTTTTTTAGAGCAGCCCCAAACCATGGAATCCGGTGTGGTATAAGTAGAAGTGATTTATATTGTTTTTGTTTCTAATGTTCTTCCTTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGTTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGAAACAATACCATCACTGATGAAGATGCTACCAAAACATCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGGTATTAGTTAATTTAATATGCTTCCTATGAACACAATTTAAGCAACATGTTGAAACTTTTCTTGGGTCAGATGAAAATACTGGGAAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTAAGAACGAACTGTCTATCTTTCTCTCTGAAATCAATGTATATGAGTAGGTGCCTAAGTTCTTCATTCGTCTGCAATGACTAATCAATATATTTCTTCCCTCGAAGAAATAGATATTTGGGAATTTAGACTTTGTTTTTCTCTTTACTGGATTTCAAAAGAACTTCAAGGATCTCCATTTGCAGGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGGTATGCTCTGATCTCTGGTACAGTTTCTTTTGCTAATTTATATGATCAGTTGCCTTGCACAGAAACGAAAGGCAACATACCAGGGTACTCATCTGTGTTTATTATGTATTGTTGAAATTTATTTGGTACGAACCGACGCTAAATGCGTACTTCTTAGGCCCATCATATATCCTTGTCATGTTTGTTTCTTGCAATTATTATGATATATTGTTTAACTCTGAGTTCTACTGAACAAGAATGCATATAAGAATAGGGGATCCTTTTGTATAGATCCTACTTGCTGATTGGCTGTTCAAGGATTATGATTATACTTGATTTCCCTGCAGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGGTATAGCAGCTAACTTGTTTCATTCAAGGACTAAGCGGACCAAAAATGAACACTTTAGTTATTGAAATAAACTTTTGCTAGAAGTTGTCTTTCTGTTCTTATCGATATTACAATTGATCATAGTTGTATCCCCTCATTTCGTTTTCTGGATACTCTTTTCCATTTTGTGCAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAATAAAACTATGGAGGAAGACATCAATTCTGGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTGGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATGCAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGA

mRNA sequence

TTATAGAACTAGGCAAGTGTGAAATCAAAAATCGGTTGGGGAAGAGAACGAAACATTCTTTTTAAGGGCGTGTAAACCTCTCCGTAGTAGATGCATTTTTAAAACGTTGAAGGAAGCCCAAAAGAAAAATCAAAAGAAGACAATATTTGCTAGTGATAGGCTTGGGCCATTACAGTAAGATCGTGTCCCCCTGTTGTTTATGCGCTTGAATCTTCAGATGAACAATAATTTAAACCCTCGACTACTTTGGAGAAGGCTCGGACTTTTTTTAGAGCAGCCCCAAACCATGGAATCCGGTGTGGTATAAGTAGAAGTGATTTATATTGTTTTTGTTTCTAATGTTCTTCCTTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGTTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGAAACAATACCATCACTGATGAAGATGCTACCAAAACATCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGATGAAAATACTGGGAAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAATAAAACTATGGAGGAAGACATCAATTCTGGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTGGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATGCAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGA

Coding sequence (CDS)

ATGTTCTTCCTTTTGGGGTGGCAGAACAAGTTTCAAACAATGCCCTCAAAACCAGGAATTGTAGAACAAGAAGTTGCTGATGGGGCGAAGTATTTGCTGCAATCAACCAAATACTCTGAGCCTTGGTGGCATGGCGTTGGAAACAATACCATCACTGATGAAGATGCTACCAAAACATCTTCTGCTGAATACCTGAACGTTACTGTTACCAGTGCAGCTATGCTTTCACAAGCAAATGATGAAAATACTGGGAAAGAAGTTCAGCATCTCAAGTACATTCCATTTTCGACATCCCCACCCGTGGGCGAACGCCTAGATCCAAATTCCCAGATGGAACTTGTTGGCCACTCGATTGTTTTGACATCATATCCTTTTTCAGATGCACAATGTTGTCAAATGCTGACTTCATATGGACCACAAACAACGTTACCTCATTTTTATGGACTTCACCATGCTAGGATGCCATTACCCCTTGAAATGGAAGCAGAGCCTGTTTATGTGAACGCAAAGCAGTATCATGGTATCCTGAGGAGAAGACAGTCGCGTGCCAAAGCTGAGCTTGAGAAGAAAGTGATAAAAAGTAGAAAGCCATATCTTCATGAATCCAGACATCTCCATGCTATGAGACGAGCAAGAGGCAGCGGAGGACGTTTCCTGAATACCAAAAAGCCGAACAGTGTTATTTCCAATAAAACTATGGAGGAAGACATCAATTCTGGTATCAACCATGTATCAGAACCTGTCAGTGAGGGTGGATCAAATTACATGGTGGCTAATGAAAATGGAATGAAGGATACACTTGATGATCAACAAAAGGAGGACAAAGAGTTCATGCCTCAAAATATGCAGATAACACACGCTTTCTTCAATGGTGGAAAGTCGAATGGCCATGGTTTATCCACATACAATTCAAAACTTGCTGATGAAAGCATGCAGGTGAATGCGGCTCCACAGAGGGCCATCCCCATCAAGTGA

Protein sequence

MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESMQVNAAPQRAIPIK

Homology

[Close]

BLAST of Carg13440-RA vs. NCBI nr
Match: XP_022960498.1 (nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata] >XP_022960499.1 nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 646.7 bits (1667), Expect = 4.1e-182
Identity = 321/324 (99.07%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSP VGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPSVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240
           SRAKAELEKKVI+SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG
Sbjct: 181 SRAKAELEKKVIRSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG GLS
Sbjct: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGLGLS 300

Query: 301 TYNSKLADESMQVNAAPQRAIPIK 325
           TYNSKLADESMQVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESMQVNAAPQRAIPIK 324

[Close]

BLAST of Carg13440-RA vs. NCBI nr
Match: XP_023515220.1 (nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 642.5 bits (1656), Expect = 7.7e-181
Identity = 318/324 (98.15%), Postives = 320/324 (98.77%), Query Frame = 0


Query: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFF LGWQNKFQTMPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFPLGWQNKFQTMPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYLNVTVTSAAMLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL
Sbjct: 61  SAEYLNVTVTSAAMLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240
           SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 
Sbjct: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSS 240

Query: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300
           INHVSEPVSEG SNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS
Sbjct: 241 INHVSEPVSEGRSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLS 300

Query: 301 TYNSKLADESMQVNAAPQRAIPIK 325
           TYNSKLADES+QVNAAPQRAIPIK
Sbjct: 301 TYNSKLADESIQVNAAPQRAIPIK 324

[Close]

BLAST of Carg13440-RA vs. NCBI nr
Match: XP_022960500.1 (nuclear transcription factor Y subunit A-1-like isoform X2 [Cucurbita moschata] >XP_022960501.1 nuclear transcription factor Y subunit A-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 618.2 bits (1593), Expect = 1.6e-173
Identity = 308/311 (99.04%), Postives = 309/311 (99.36%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA
Sbjct: 1   MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 60

Query: 74  MLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
           MLSQANDENTGKEVQHLKYIPFSTSP VGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM
Sbjct: 61  MLSQANDENTGKEVQHLKYIPFSTSPSVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 120

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVI+
Sbjct: 121 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIR 180

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS
Sbjct: 181 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 240

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESMQV 313
           NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG GLSTYNSKLADESMQV
Sbjct: 241 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGLGLSTYNSKLADESMQV 300

Query: 314 NAAPQRAIPIK 325
           NAAPQRAIPIK
Sbjct: 301 NAAPQRAIPIK 311

[Close]

BLAST of Carg13440-RA vs. NCBI nr
Match: XP_023515221.1 (nuclear transcription factor Y subunit A-4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 616.7 bits (1589), Expect = 4.5e-173
Identity = 306/311 (98.39%), Postives = 308/311 (99.04%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPSKPGIVEQE ADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA
Sbjct: 1   MPSKPGIVEQEAADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 60

Query: 74  MLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
           MLSQANDENTG+EVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM
Sbjct: 61  MLSQANDENTGQEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 120

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 121 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 180

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS INHVSEPVSEG S
Sbjct: 181 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSSINHVSEPVSEGRS 240

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESMQV 313
           NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADES+QV
Sbjct: 241 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLADESIQV 300

Query: 314 NAAPQRAIPIK 325
           NAAPQRAIPIK
Sbjct: 301 NAAPQRAIPIK 311

[Close]

BLAST of Carg13440-RA vs. NCBI nr
Match: XP_023004607.1 (nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita maxima] >XP_023004608.1 nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 592.4 bits (1526), Expect = 9.1e-166
Identity = 291/296 (98.31%), Postives = 293/296 (98.99%), Query Frame = 0


Query: 1   MFFLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60
           MFFLLGWQNKFQTMPSKPGIVEQEV DGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS
Sbjct: 1   MFFLLGWQNKFQTMPSKPGIVEQEVVDGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTS 60

Query: 61  SAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVL 120
           SAEYL+VTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMEL+GHSIVL
Sbjct: 61  SAEYLDVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELIGHSIVL 120

Query: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180
           TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ
Sbjct: 121 TSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 180

Query: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240
           SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG
Sbjct: 181 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSG 240

Query: 241 INHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNG 297
           INHVSEPVSE GSNYMVANENGMKDTLD QQKEDKEFMPQNMQITHAFFNGGKSNG
Sbjct: 241 INHVSEPVSESGSNYMVANENGMKDTLDGQQKEDKEFMPQNMQITHAFFNGGKSNG 296

[Close]

BLAST of Carg13440-RA vs. TAIR10
Match: AT3G20910.1 (nuclear factor Y, subunit A9)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-31
Identity = 96/231 (41.56%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENT-GKEVQHLKYIPFSTSP 100
           PW                  S++ + + + S    S +N +NT  KE Q       +TSP
Sbjct: 34  PWHRAAAACNANSSVEAGDKSSKSIALALESNGSKSPSNRDNTVNKESQ------VTTSP 93

Query: 101 -PVGERLDPNSQM------------ELVGHSI-VLTSYPFSDAQCCQMLTSYG--PQTTL 160
              G+  D N +             +LVGH++   +S P+ D     ++ +YG  P   +
Sbjct: 94  QSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFV 153

Query: 161 PHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESR 220
           P + G+ H+RMPLP EM  EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESR
Sbjct: 154 P-YGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESR 213

Query: 221 HLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSN 255
           H HAMRR RG+GGRF   KK N+  S +  EE  N    HV++  S   S+
Sbjct: 214 HQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSN---GHVTQSPSSSNSD 252

[Close]

BLAST of Carg13440-RA vs. TAIR10
Match: AT5G12840.1 (nuclear factor Y, subunit A1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 93/227 (40.97%), Postives = 118/227 (51.98%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTG--KEVQHL-------KYIPFSTSPPVGERLDPNSQM----E 133
              V SA+     N EN G  K+ Q          +      P +  R   +  +    E
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPE 120

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQ 193
           LVGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQ
Sbjct: 121 LVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQ 180

Query: 194 YHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
           Y GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 YEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 227

[Close]

BLAST of Carg13440-RA vs. TAIR10
Match: AT2G34720.1 (nuclear factor Y, subunit A4)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-26
Identity = 73/165 (44.24%), Postives = 92/165 (55.76%), Query Frame = 0


Query: 70  TSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNS-QMELVGHSIVLTSYPFSDA 129
           +S   LS  N+ +  KE    +  P   S    E +D NS   E + H +    YP+ D 
Sbjct: 3   SSVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDP 62

Query: 130 QCCQMLTSYGPQTTLPHFY--------GLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 189
                 + +  Q  LPH Y        G+    +PL  +   EPV+VNAKQYHGILRRRQ
Sbjct: 63  ---YYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQ 122

Query: 190 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPN 226
           SRAK E   + IK++KPY+HESRHLHA+RR RG GGRFLN KK N
Sbjct: 123 SRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKEN 160

[Close]

BLAST of Carg13440-RA vs. TAIR10
Match: AT5G06510.1 (nuclear factor Y, subunit A10)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-26
Identity = 83/237 (35.02%), Postives = 119/237 (50.21%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPP 100
           PWW+  G+  +T E  +  +S  +  V   +        D+ T   +         T  P
Sbjct: 13  PWWNAFGSQPLTTESLSGEASDSFTGVKAVTTEAEQGVVDKQTSTTL--------FTFSP 72

Query: 101 VGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHA-------- 160
            GE+   +     V  ++    + F  AQ       Y     +  +YG+  A        
Sbjct: 73  GGEKSSRDVPKPHVAFAMQSACFEFGFAQPMM----YTKHPHVEQYYGVVSAYGSQRSSG 132

Query: 161 RMPLPLEMEAE---PVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR 220
           R+ +PL+ME E    +YVN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHAMR
Sbjct: 133 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMR 192

Query: 221 RARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSNYMVANENGMKDT 267
           R RGSGGRFLNTK  ++   +K      NS  + V  P +E  ++   ANE+ + D+
Sbjct: 193 RPRGSGGRFLNTKTADAAKQSKPS----NSQSSEVFHPENETINSSREANESNLSDS 230

[Close]

BLAST of Carg13440-RA vs. TAIR10
Match: AT1G54160.1 (nuclear factor Y, subunit A5)

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-25
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 141 TTLPH--FYGLHHARMPLPLEM-EAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKP 200
           T LPH    GL  +R+PLP  + E EP++VNAKQYH ILRRR+ RAK E + K+IK RKP
Sbjct: 153 TALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKP 212

Query: 201 YLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEG 252
           YLHESRHLHA++RARGSGGRFLNTKK     SN      + +G N    P   G
Sbjct: 213 YLHESRHLHALKRARGSGGRFLNTKKLQE-SSNSLCSSQMANGQNFSMSPHGGG 265

[Close]

BLAST of Carg13440-RA vs. Swiss-Prot
Match: sp|Q945M9|NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-30
Identity = 96/231 (41.56%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENT-GKEVQHLKYIPFSTSP 100
           PW                  S++ + + + S    S +N +NT  KE Q       +TSP
Sbjct: 34  PWHRAAAACNANSSVEAGDKSSKSIALALESNGSKSPSNRDNTVNKESQ------VTTSP 93

Query: 101 -PVGERLDPNSQM------------ELVGHSI-VLTSYPFSDAQCCQMLTSYG--PQTTL 160
              G+  D N +             +LVGH++   +S P+ D     ++ +YG  P   +
Sbjct: 94  QSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFV 153

Query: 161 PHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESR 220
           P + G+ H+RMPLP EM  EPV+VNAKQY  ILRRRQ+RAKAELEKK+IKSRKPYLHESR
Sbjct: 154 P-YGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESR 213

Query: 221 HLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSN 255
           H HAMRR RG+GGRF   KK N+  S +  EE  N    HV++  S   S+
Sbjct: 214 HQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSN---GHVTQSPSSSNSD 252

[Close]

BLAST of Carg13440-RA vs. Swiss-Prot
Match: sp|Q9LXV5|NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-29
Identity = 93/227 (40.97%), Postives = 118/227 (51.98%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWW----HGVGNNTITDEDATKTSSAEYLNVT- 73
           M SKPG   +E  +    + Q   Y+EPWW     GV          + +SS +  N + 
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSE 60

Query: 74  ---VTSAAMLSQANDENTG--KEVQHL-------KYIPFSTSPPVGERLDPNSQM----E 133
              V SA+     N EN G  K+ Q          +      P +  R   +  +    E
Sbjct: 61  SNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPE 120

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYG-PQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQ 193
           LVGH I     P+ D     ++ +YG  Q     + G+   R  LPL+M  EPVYVNAKQ
Sbjct: 121 LVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQ 180

Query: 194 YHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRF 219
           Y GILRRR++RAKAELE+KVI+ RKPYLHESRH HAMRRAR SGGRF
Sbjct: 181 YEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRF 227

[Close]

BLAST of Carg13440-RA vs. Swiss-Prot
Match: sp|Q8VY64|NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NFYA4 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-25
Identity = 73/165 (44.24%), Postives = 92/165 (55.76%), Query Frame = 0


Query: 70  TSAAMLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNS-QMELVGHSIVLTSYPFSDA 129
           +S   LS  N+ +  KE    +  P   S    E +D NS   E + H +    YP+ D 
Sbjct: 3   SSVHELSDNNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDP 62

Query: 130 QCCQMLTSYGPQTTLPHFY--------GLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQ 189
                 + +  Q  LPH Y        G+    +PL  +   EPV+VNAKQYHGILRRRQ
Sbjct: 63  ---YYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQ 122

Query: 190 SRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPN 226
           SRAK E   + IK++KPY+HESRHLHA+RR RG GGRFLN KK N
Sbjct: 123 SRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKEN 160

[Close]

BLAST of Carg13440-RA vs. Swiss-Prot
Match: sp|Q8LFU0|NFYAA_ARATH (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana OX=3702 GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 8.2e-25
Identity = 83/237 (35.02%), Postives = 119/237 (50.21%), Query Frame = 0


Query: 41  PWWHGVGNNTITDEDATKTSSAEYLNVTVTSAAMLSQANDENTGKEVQHLKYIPFSTSPP 100
           PWW+  G+  +T E  +  +S  +  V   +        D+ T   +         T  P
Sbjct: 13  PWWNAFGSQPLTTESLSGEASDSFTGVKAVTTEAEQGVVDKQTSTTL--------FTFSP 72

Query: 101 VGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHA-------- 160
            GE+   +     V  ++    + F  AQ       Y     +  +YG+  A        
Sbjct: 73  GGEKSSRDVPKPHVAFAMQSACFEFGFAQPMM----YTKHPHVEQYYGVVSAYGSQRSSG 132

Query: 161 RMPLPLEMEAE---PVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMR 220
           R+ +PL+ME E    +YVN+KQYHGI+RRRQSRAKAE   K+ + RKPY+H SRHLHAMR
Sbjct: 133 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMR 192

Query: 221 RARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSNYMVANENGMKDT 267
           R RGSGGRFLNTK  ++   +K      NS  + V  P +E  ++   ANE+ + D+
Sbjct: 193 RPRGSGGRFLNTKTADAAKQSKPS----NSQSSEVFHPENETINSSREANESNLSDS 230

[Close]

BLAST of Carg13440-RA vs. Swiss-Prot
Match: sp|Q9SYH4|NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.1e-24
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 0


Query: 141 TTLPH--FYGLHHARMPLPLEM-EAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKP 200
           T LPH    GL  +R+PLP  + E EP++VNAKQYH ILRRR+ RAK E + K+IK RKP
Sbjct: 153 TALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKP 212

Query: 201 YLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEG 252
           YLHESRHLHA++RARGSGGRFLNTKK     SN      + +G N    P   G
Sbjct: 213 YLHESRHLHALKRARGSGGRFLNTKKLQE-SSNSLCSSQMANGQNFSMSPHGGG 265

[Close]

BLAST of Carg13440-RA vs. TrEMBL
Match: tr|A0A1S3CED9|A0A1S3CED9_CUCME (nuclear transcription factor Y subunit A-9-like OS=Cucumis melo OX=3656 GN=LOC103499928 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 7.0e-138
Identity = 259/321 (80.69%), Postives = 273/321 (85.05%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPS+P  V+Q+VAD AKYLLQS+KYSEPWWHGVGNNTI  EDA KTSSAEYLNVTV S A
Sbjct: 2   MPSEPENVDQQVADRAKYLLQSSKYSEPWWHGVGNNTIAGEDAAKTSSAEYLNVTVASGA 61

Query: 74  MLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
              QANDEN GKEVQHLKYIPFSTSPPVGE LD NSQMELVGHSIVLTSYPFSDAQ CQM
Sbjct: 62  TQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQM 121

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQ TLP  YGLHHARMPLPLEME EPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 122 LTSYGPQATLPRIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 181

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPN+V+SN   EEDINSG NH ++PVSE GS
Sbjct: 182 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDINSGANHSTKPVSEVGS 241

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD----- 313
            YMV +E G+K+TLD+Q    +E M QNMQITHAFFN GKSN HGLSTYNS+L D     
Sbjct: 242 KYMVTHEKGIKNTLDEQ---SRELMTQNMQITHAFFN-GKSNVHGLSTYNSQLGDVEGGH 301

Query: 314 -----ESMQVNAAPQRAIPIK 325
                ESMQVN APQRAIPIK
Sbjct: 302 LDHPHESMQVNGAPQRAIPIK 318

[Close]

BLAST of Carg13440-RA vs. TrEMBL
Match: tr|A0A0A0K612|A0A0A0K612_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428130 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 3.5e-137
Identity = 258/321 (80.37%), Postives = 273/321 (85.05%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MPS+P  V+Q+VADGAKYLLQSTK+SEPWWHGVGNNTI  EDA KTSSAEYLNVTV S A
Sbjct: 2   MPSEPENVDQQVADGAKYLLQSTKFSEPWWHGVGNNTIAGEDAAKTSSAEYLNVTVASGA 61

Query: 74  MLSQANDENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQM 133
              QANDEN GKEVQHLKYIPFSTSPPVGE LD NSQMELVGHSIVLTSYPFSDAQ CQM
Sbjct: 62  TQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQM 121

Query: 134 LTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 193
           LTSYGPQ TLP  YGLHHARMPLPLEME EPVYVNAKQYHGILRRRQSRAKAELEKKVIK
Sbjct: 122 LTSYGPQATLPRIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIK 181

Query: 194 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGS 253
           SRKPYLHESRHLHAMRRARGSGGRFLNTKKPN+V+SN   EEDI+S  NH ++PVSE  S
Sbjct: 182 SRKPYLHESRHLHAMRRARGSGGRFLNTKKPNNVMSNTNREEDIDSVANHSTKPVSEAVS 241

Query: 254 NYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGLSTYNSKLAD----- 313
            YMV NE G+K+TLD+Q    +EFM QNMQITHAFFN GKSN HGLSTY+S+L D     
Sbjct: 242 KYMVTNEKGIKNTLDEQ---SREFMTQNMQITHAFFN-GKSNVHGLSTYSSQLGDVEGGH 301

Query: 314 -----ESMQVNAAPQRAIPIK 325
                ESMQVN APQRAIPIK
Sbjct: 302 LDQPHESMQVNGAPQRAIPIK 318

[Close]

BLAST of Carg13440-RA vs. TrEMBL
Match: tr|A0A2I4EBM2|A0A2I4EBM2_9ROSI (nuclear transcription factor Y subunit A-1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108988110 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.0e-77
Identity = 173/336 (51.49%), Postives = 209/336 (62.20%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MP+KPG  +  +  G + +LQS  YS+PWW GVG+N    ++A+K++S E+LNV+V + A
Sbjct: 2   MPAKPGNEDGRLEHGGQTVLQSATYSQPWWRGVGSNVSLGDNASKSTSMEHLNVSVGNGA 61

Query: 74  MLSQAN--------------DENTGKEVQHLKYIPFSTSPPVGERLDPNSQMELVGHSIV 133
           M  + N              D N GKE +    +P S +P + E LDPNSQMELVGHSIV
Sbjct: 62  MQLKVNGPLDDGAKFNKETRDGNIGKEHRDNNRVP-SLTPKMVEHLDPNSQMELVGHSIV 121

Query: 134 LTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQYHGILRRR 193
           LTSYP+SD Q   M  SYGPQ  +P  YG+HHARMPLPLEME EPVYVNAKQYHGILRRR
Sbjct: 122 LTSYPYSDQQYGGMFASYGPQAMIPELYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRR 181

Query: 194 QSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKTMEEDINS 253
           QSRAKAELEKK+IK RKPYLHESRHLHAMRRARG GGRFLNTKK ++ +S+   EE +N 
Sbjct: 182 QSRAKAELEKKMIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLDN-LSDPPSEEGMNM 241

Query: 254 GINHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGGKSNGHGL 313
           G      P    GS     N NG   +  +Q K     +  N    H F  G  S+    
Sbjct: 242 GAKPSMGPTISSGSKCFFNNGNGNSGSSLNQHKGSLPIV-HNTHGAHCFSKGNSSSNGLS 301

Query: 314 STYNSKLAD-----------ESMQVNAAPQRAIPIK 325
           STY+S  +D           ESMQVN     A+PIK
Sbjct: 302 STYHSLFSDGKEVDCLGQQRESMQVNGVAHGALPIK 334

[Close]

BLAST of Carg13440-RA vs. TrEMBL
Match: tr|D7T311|D7T311_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00860 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.0e-77
Identity = 178/359 (49.58%), Postives = 218/359 (60.72%), Query Frame = 0


Query: 3   FLLGWQNKFQTMPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDE----DATK 62
           FL  W  +   MP+KP I ++ +  G K    ST YS+PWWHGVGNN I+        +K
Sbjct: 51  FLFSWWKRI--MPTKPKIEDRRIEPGGKSNPSSTVYSQPWWHGVGNNAISPAALGGSPSK 110

Query: 63  TSSAEYLNVTVTSAAMLSQAN---------------------DENTGKEVQHLKYIPFST 122
           ++S E+LN  +TS     QAN                     D   G+E QHL     ST
Sbjct: 111 STSVEHLNSHITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASST 170

Query: 123 SPPVGERLDPNSQMELVGHSIVLTSYPFSDAQCCQMLTSYGPQTTL-PHFYGLHHARMPL 182
            P + E L+PNSQMELVGHSIVLTSYP+ D     ++TSYGPQ  + PH +G+H  RMPL
Sbjct: 171 LPIMSEHLEPNSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPL 230

Query: 183 PLEMEAEPVYVNAKQYHGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGG 242
           PLEME EPVYVNAKQYHGILRRRQSRAKAELEKK IK RKPYLHESRH HAMRRARG GG
Sbjct: 231 PLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGG 290

Query: 243 RFLNTKKPNSVISNKTMEEDINSGINHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKE 302
           RFLNTKK ++  +N T E+   SG    ++  S  GS ++  N +   D+   QQ E+K 
Sbjct: 291 RFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQ-EEKG 350

Query: 303 FMPQNMQITHAFFNGGKSNGHGLST-YNSKLAD----------ESMQVNAAPQRAIPIK 325
              Q+M   H + NG + NGHGLS+ Y+S              E+MQ+N AP RA+PIK
Sbjct: 351 RTIQDMLEAHTYSNGNR-NGHGLSSAYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK 405

[Close]

BLAST of Carg13440-RA vs. TrEMBL
Match: tr|A0A2I4EBK9|A0A2I4EBK9_9ROSI (nuclear transcription factor Y subunit A-1-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108988110 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.6e-76
Identity = 173/343 (50.44%), Postives = 209/343 (60.93%), Query Frame = 0


Query: 14  MPSKPGIVEQEVADGAKYLLQSTKYSEPWWHGVGNNTITDEDATKTSSAEYLNVTVTSAA 73
           MP+KPG  +  +  G + +LQS  YS+PWW GVG+N    ++A+K++S E+LNV+V + A
Sbjct: 2   MPAKPGNEDGRLEHGGQTVLQSATYSQPWWRGVGSNVSLGDNASKSTSMEHLNVSVGNGA 61

Query: 74  MLSQAN---------------------DENTGKEVQHLKYIPFSTSPPVGERLDPNSQME 133
           M  + N                     D N GKE +    +P S +P + E LDPNSQME
Sbjct: 62  MQLKVNGPLDDGAKFNKETRGTVASKSDGNIGKEHRDNNRVP-SLTPKMVEHLDPNSQME 121

Query: 134 LVGHSIVLTSYPFSDAQCCQMLTSYGPQTTLPHFYGLHHARMPLPLEMEAEPVYVNAKQY 193
           LVGHSIVLTSYP+SD Q   M  SYGPQ  +P  YG+HHARMPLPLEME EPVYVNAKQY
Sbjct: 122 LVGHSIVLTSYPYSDQQYGGMFASYGPQAMIPELYGMHHARMPLPLEMEEEPVYVNAKQY 181

Query: 194 HGILRRRQSRAKAELEKKVIKSRKPYLHESRHLHAMRRARGSGGRFLNTKKPNSVISNKT 253
           HGILRRRQSRAKAELEKK+IK RKPYLHESRHLHAMRRARG GGRFLNTKK ++ +S+  
Sbjct: 182 HGILRRRQSRAKAELEKKMIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLDN-LSDPP 241

Query: 254 MEEDINSGINHVSEPVSEGGSNYMVANENGMKDTLDDQQKEDKEFMPQNMQITHAFFNGG 313
            EE +N G      P    GS     N NG   +  +Q K     +  N    H F  G 
Sbjct: 242 SEEGMNMGAKPSMGPTISSGSKCFFNNGNGNSGSSLNQHKGSLPIV-HNTHGAHCFSKGN 301

Query: 314 KSNGHGLSTYNSKLAD-----------ESMQVNAAPQRAIPIK 325
            S+    STY+S  +D           ESMQVN     A+PIK
Sbjct: 302 SSSNGLSSTYHSLFSDGKEVDCLGQQRESMQVNGVAHGALPIK 341

The following BLAST results are available for this feature:

BLAST of Carg13440-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960498.1	4.1e-182	99.07	nuclear transcription factor Y subunit A-1-like isoform X1 [Cucurbita moschata] ...	[more]
XP_023515220.1	7.7e-181	98.15	nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita pepo subsp...	[more]
XP_022960500.1	1.6e-173	99.04	nuclear transcription factor Y subunit A-1-like isoform X2 [Cucurbita moschata] ...	[more]
XP_023515221.1	4.5e-173	98.39	nuclear transcription factor Y subunit A-4-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023004607.1	9.1e-166	98.31	nuclear transcription factor Y subunit A-4-like isoform X1 [Cucurbita maxima] >X...	[more]

BLAST of Carg13440-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20910.1	1.2e-31	41.56	nuclear factor Y, subunit A9	[more]
AT5G12840.1	1.4e-30	40.97	nuclear factor Y, subunit A1	[more]
AT2G34720.1	1.6e-26	44.24	nuclear factor Y, subunit A4	[more]
AT5G06510.1	4.5e-26	35.02	nuclear factor Y, subunit A10	[more]
AT1G54160.1	5.0e-25	57.02	nuclear factor Y, subunit A5	[more]

BLAST of Carg13440-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q945M9\|NFYA9_ARATH	2.2e-30	41.56	Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9LXV5\|NFYA1_ARATH	2.5e-29	40.97	Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q8VY64\|NFYA4_ARATH	2.8e-25	44.24	Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q8LFU0\|NFYAA_ARATH	8.2e-25	35.02	Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
sp\|Q9SYH4\|NFYA5_ARATH	9.1e-24	57.02	Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of Carg13440-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CED9\|A0A1S3CED9_CUCME	7.0e-138	80.69	nuclear transcription factor Y subunit A-9-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K612\|A0A0A0K612_CUCSA	3.5e-137	80.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428130 PE=4 SV=1	[more]
tr\|A0A2I4EBM2\|A0A2I4EBM2_9ROSI	4.0e-77	51.49	nuclear transcription factor Y subunit A-1-like isoform X2 OS=Juglans regia OX=5...	[more]
tr\|D7T311\|D7T311_VITVI	4.0e-77	49.58	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00860 PE=4 SV=...	[more]
tr\|A0A2I4EBK9\|A0A2I4EBK9_9ROSI	2.6e-76	50.44	nuclear transcription factor Y subunit A-1-like isoform X1 OS=Juglans regia OX=5...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016602	CCAAT-binding factor complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR018362	CCAAT-binding_factor_CS
IPR001289	NFYA

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13440	Carg13440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13440-RA	Carg13440-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13440-RA.CDS.5	Carg13440-RA.CDS.5	CDS
Carg13440-RA.CDS.4	Carg13440-RA.CDS.4	CDS
Carg13440-RA.CDS.3	Carg13440-RA.CDS.3	CDS
Carg13440-RA.CDS.2	Carg13440-RA.CDS.2	CDS
Carg13440-RA.CDS.1	Carg13440-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13440-RA.five_prime_UTR.1	Carg13440-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13440-RA.exon.5	Carg13440-RA.exon.5	exon
Carg13440-RA.exon.4	Carg13440-RA.exon.4	exon
Carg13440-RA.exon.3	Carg13440-RA.exon.3	exon
Carg13440-RA.exon.2	Carg13440-RA.exon.2	exon
Carg13440-RA.exon.1	Carg13440-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001289	Nuclear transcription factor Y subunit A	PRINTS	PR00616	CCAATSUBUNTB	coord: 164..186 score: 77.29 coord: 195..218 score: 81.71
IPR001289	Nuclear transcription factor Y subunit A	SMART	SM00521	cbf3	coord: 160..221 e-value: 5.4E-37 score: 138.9
IPR001289	Nuclear transcription factor Y subunit A	PFAM	PF02045	CBFB_NFYA	coord: 163..218 e-value: 1.3E-26 score: 92.9
IPR001289	Nuclear transcription factor Y subunit A	PANTHER	PTHR12632	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	coord: 67..310
IPR001289	Nuclear transcription factor Y subunit A	PROSITE	PS51152	NFYA_HAP2_2	coord: 161..221 score: 38.398
None	No IPR available	PANTHER	PTHR12632:SF14	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1-RELATED	coord: 67..310
IPR018362	CCAAT-binding factor, conserved site	PROSITE	PS00686	NFYA_HAP2_1	coord: 166..186