Carg13428-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13428-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_049 : 407366 .. 410580 (-)
Sequence length	1863

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGGTTTTTCGATCTTCTTTTTTAATCTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTCTTCGTTTTCAATGCTTGGAACTGATTGGAACTGATTGGAATTGATTCCTATGTAGTTAAGAATACTCTTTCTGTCTTTGTTGGATTTATAAGTGAAGAATGTTGAATCACGGCTCTTAACGAAAGCTCTAAATCGATGAGTCAGGATAAATTTAATCTTTAATTGCTTTCACACTCTTACGTATTCTTCATAGTGTATAAAATCATCAATCAACTCAAAAGTAAGTTCAATGAATTACCGTAAACTTAATCTTTTATTACGAGCTGATAACTTGAATATGAATGAAGTACGAATTCTACATGAATTGCGGCTAAAATGAACTATTTCTACTCTGTCATTGAGGAGAGATTACTCATCCAACTCCAATTCCATGACTGAATGGTTACTTTTTTGTGAAATTCTAAGTGTTCTCAATATCCTTCCAGAAGTCTTTAGCACTGGAAGTTATGTAAATCTTAGGAAATGAAAGACTAAATGGAGAATCCTCCCAAACTGTAGAGGCTATACCTTTCTTCAGAAAAGCTCTTGTTTTAGCAATCTCAACCCATTGGCCGAAACTTCTTCTTGTTGAGGATTATTGGAAAGAGTAGTCCCACGTTGGCTAATTAAGAGGAAAATCATGGGTTTATAAGTAAGGAATACATCTTTATTGGTATGAAGTCTTTTGGGGAAACCAAAAGCAAAGTCATTAGGGCTTATGCCCAAAAACAAAGCCATTAGAGCTTATGCTCAAAGTGGACAATATCATACTACTGTGAGAGCCCGTGATTCCTAACACTTCTACCTGAAATTTCTCTCACGACGGAATCAGGCTATCACTATTTGAGATGATATGTCAACGTACGGTGGTGTTCTCCTGAAGAAAAAACCTCTATAGCTGTTTTGGTAAGAGAGAGGCATTTCTGTTTCTGATATCTCCCATTCCCAGCCTGCCCAAAGAGCCATGTTTGCTTTGTTTCTGCTTTCAGAACCCTTACATCCTGTCTTGTTAGTGATCGCTTAAACCCATTTGAAATATTTCTTGAGAAGGAGCTTCTGAAGAACTTCTTATTCAAGGGGGTTATTACAAGAGCTTTCAAGGTAGCAGCTAACCAAACAACCGAGAATCCATCCAAAGAAGGCTCATATAGGTTTGAGAAATTTCTTTCCTTCATTTTTTTGAATTCAATTGCGAAAACAAAAAATTGATACAGCATTTCCATGATGAAAATGAAAAAGCTCATTACTAATGAACTGATTTTACCGTCCTATTTCAACAATAAGAGTTATGACCAAATAATTTTGTATATCTTTTCAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAGTGCTTATTTATGATTTTGGAAACGCCACGTTCAACGTAGCTCAACGGTTAAGGCATTACTACTAATCTCAGGAGGTTGTAGGTTTGAATCTTGCTGCTCCACATGTGATGTAGATTCAAAAGATAATGTTGGCATCTCACTCAGTTCTCCTGTCGTATATATGCTTCTTTGGAAACGCCACGTTCTGCCTACACGAGAAAATCTCTTGCTTTTTTAGTGCCTTTTCCTTCCAGCTGATTTTATGTTGTTCTCATGTACCAAAACTTTATGATCCTCTTACATCCCTTTTATATCCTATTGGTTTGATGCAAAGAGGTGGGCTCTAATAGAATTTGGCTTGGCTCGACAAGAAAACTGTAATATTCCAAGCTTACCGCTTGCAAATATTGTCTTCTTTGGGCTTTTTCTTTCGGGCTTCTTCCC

mRNA sequence

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAGTGCTTATTTATGATTTTGGAAACGCCACGTTCAACGTAGCTCAACGGTTAAGGCATTACTACTAATCTCAGGAGGTTGTAGGTTTGAATCTTGCTGCTCCACATGTGATGTAGATTCAAAAGATAATGTTGGCATCTCACTCAGTTCTCCTGTCGTATATATGCTTCTTTGGAAACGCCACGTTCTGCCTACACGAGAAAATCTCTTGCTTTTTTAGTGCCTTTTCCTTCCAGCTGATTTTATGTTGTTCTCATGTACCAAAACTTTATGATCCTCTTACATCCCTTTTATATCCTATTGGTTTGATGCAAAGAGGTGGGCTCTAATAGAATTTGGCTTGGCTCGACAAGAAAACTGTAATATTCCAAGCTTACCGCTTGCAAATATTGTCTTCTTTGGGCTTTTTCTTTCGGGCTTCTTCCC

Coding sequence (CDS)

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAG

Protein sequence

MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNVKRMEEYFRKMKHQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMKENKCLPDSITFATMVHALKTHGMTEAAQRLENKLIVGRDDKIN

Homology

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BLAST of Carg13428-RA vs. NCBI nr
Match: XP_023515060.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.8 bits (1418), Expect = 4.5e-153
Identity = 299/301 (99.34%), Postives = 300/301 (99.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           MEPHLHL NAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP
Sbjct: 1   MEPHLHLSNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
           HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK
Sbjct: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII
Sbjct: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIE+GSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIETGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300

Query: 301 E 302
           E
Sbjct: 301 E 301

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BLAST of Carg13428-RA vs. NCBI nr
Match: XP_022960242.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_022960243.1 pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_022960244.1 pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata])

HSP 1 Score: 548.5 bits (1412), Expect = 2.2e-152
Identity = 298/301 (99.00%), Postives = 300/301 (99.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           MEPHLHL NAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP
Sbjct: 1   MEPHLHLHNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
           HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLH+
Sbjct: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHE 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AIETVDEMKSISDCKPDVHTYSILIDCCTR+RRLDLLKDILADMSYLGITCNTVTYNTII
Sbjct: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of Carg13428-RA vs. NCBI nr
Match: XP_023004532.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita maxima])

HSP 1 Score: 488.0 bits (1255), Expect = 3.6e-134
Identity = 270/275 (98.18%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 27  MASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKY 86
           MASINPTP FISSSRSRKLNRTSDQSSDGLQRD KKGLSRILRKDAAIRAIERKANSKKY
Sbjct: 1   MASINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKY 60

Query: 87  NNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQA 146
           NNLWP AVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQP+QA
Sbjct: 61  NNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQA 120

Query: 147 SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID 206
           SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID
Sbjct: 121 SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID 180

Query: 207 CCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL 266
           CCTR+RRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL
Sbjct: 181 CCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL 240

Query: 267 PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE 302
           PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE
Sbjct: 241 PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE 275

[Close]

BLAST of Carg13428-RA vs. NCBI nr
Match: XP_008461323.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461324.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461325.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461327.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461328.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.3e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428-RA vs. NCBI nr
Match: XP_008461329.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Cucumis melo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.3e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428-RA vs. TAIR10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 322.8 bits (826), Expect = 3.6e-88
Identity = 163/293 (55.63%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 8   LNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRI 67
           +++P++ +   P  S   +M S       + + R+ K+N  S   S   Q DPKK LSRI
Sbjct: 33  ISSPVY-FRCIPTISITPTMCSTK-----VPNERTEKMN--SGLISTRHQVDPKKELSRI 92

Query: 68  LRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRC 127
           LR DAA++ IERKANS+KY  LWP+AVLEALDEAI+EN W++ LKIF LLR+QHWYEPRC
Sbjct: 93  LRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRC 152

Query: 128 KTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDE 187
           KTYTKL  +LG C+QP+QASLLF++MLSEGLKP+IDVYT+L+S YG+S LL KA  T++ 
Sbjct: 153 KTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEY 212

Query: 188 MKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAK 247
           MKS+SDCKPDV T+++LI CC +  R DL+K I+ +MSYLG+ C+TVTYNTII+G+GKA 
Sbjct: 213 MKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAG 272

Query: 248 MFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
           MFE+MES+L +MIE G  LPD+                     WY+ FQLMG+
Sbjct: 273 MFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGV 317

[Close]

BLAST of Carg13428-RA vs. TAIR10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 200.7 bits (509), Expect = 2.1e-51
Identity = 104/208 (50.00%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           +K +S ILR++A    IE+K  SKK   L PR VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WY+P    Y KL++MLGKC+QPE+A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPD 269
           + +GKAKMF +MES L++M+    C PD
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPD 291

[Close]

BLAST of Carg13428-RA vs. TAIR10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-40
Identity = 103/226 (45.58%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 74  IRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 133
           I+ +++K + +   N W   V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 134 LMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 193
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 194 CKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 253
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 254 SLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMG 300
            +L +M+ S +C    XXXXXXXXXXXXXXXXXXXXXWY +F+  G
Sbjct: 251 KVLSDMLVSTACXXXXXXXXXXXXXXXXXXXXXXXXXWYEKFRNFG 296

[Close]

BLAST of Carg13428-RA vs. TAIR10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-13
Identity = 51/192 (26.56%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           ISS R      ++++ +  L R     +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q   A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRYR 216
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 217 RLDLLKDILADM 225
           ++D +  +  D+
Sbjct: 231 KVDQVNALFKDL 234

[Close]

BLAST of Carg13428-RA vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 36/150 (24.00%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 153 MLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD--CKPDVHTYSILIDCCTR 212
           +L +   P   +YT L+  Y ++G +      ++ M+   D    PD  TY+ ++     
Sbjct: 405 LLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVN 464

Query: 213 YRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLX 272
              +D  + +LA+M+ +G+  N +TYN ++ G+ K    ++ E LL EM E     PD+ 
Sbjct: 465 AGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVV 524

Query: 273 XXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
                               ++NE +  GI
Sbjct: 525 SYNIIIDGCILIDDSAGALAFFNEMRTRGI 554

[Close]

BLAST of Carg13428-RA vs. Swiss-Prot
Match: sp|Q9SCP4|PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 8.5e-87
Identity = 158/264 (59.85%), Postives = 199/264 (75.38%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           + + R+ K+N  S   S   Q DPKK LSRILR DAA++ IERKANS+KY  LWP+AVLE
Sbjct: 6   VPNERTEKMN--SGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLE 65

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
           ALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL  +LG C+QP+QASLLF++MLSE
Sbjct: 66  ALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSE 125

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDL 216
           GLKP+IDVYT+L+S YG+S LL KA  T++ MKS+SDCKPDV T+++LI CC +  R DL
Sbjct: 126 GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDL 185

Query: 217 LKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXX 276
           +K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G  LPD+       
Sbjct: 186 VKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSII 245

Query: 277 XXXXXXXXXXXXXXWYNEFQLMGI 301
                         WY+ FQLMG+
Sbjct: 246 GSYGNGRNMRKMESWYSRFQLMGV 267

[Close]

BLAST of Carg13428-RA vs. Swiss-Prot
Match: sp|Q9FKC3|PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-50
Identity = 104/208 (50.00%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           +K +S ILR++A    IE+K  SKK   L PR VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WY+P    Y KL++MLGKC+QPE+A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPD 269
           + +GKAKMF +MES L++M+    C PD
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPD 291

[Close]

BLAST of Carg13428-RA vs. Swiss-Prot
Match: sp|Q9SQU6|PP216_ARATH (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.1e-39
Identity = 103/226 (45.58%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 74  IRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 133
           I+ +++K + +   N W   V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 134 LMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 193
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 194 CKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 253
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 254 SLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMG 300
            +L +M+ S +C    XXXXXXXXXXXXXXXXXXXXXWY +F+  G
Sbjct: 251 KVLSDMLVSTACXXXXXXXXXXXXXXXXXXXXXXXXXWYEKFRNFG 296

[Close]

BLAST of Carg13428-RA vs. Swiss-Prot
Match: sp|Q9SV96|PP358_ARATH (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-12
Identity = 51/192 (26.56%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           ISS R      ++++ +  L R     +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q   A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRYR 216
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 217 RLDLLKDILADM 225
           ++D +  +  D+
Sbjct: 231 KVDQVNALFKDL 234

[Close]

BLAST of Carg13428-RA vs. Swiss-Prot
Match: sp|Q9SF38|PP222_ARATH (Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF152 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-09
Identity = 36/150 (24.00%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 153 MLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD--CKPDVHTYSILIDCCTR 212
           +L +   P   +YT L+  Y ++G +      ++ M+   D    PD  TY+ ++     
Sbjct: 405 LLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVN 464

Query: 213 YRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLX 272
              +D  + +LA+M+ +G+  N +TYN ++ G+ K    ++ E LL EM E     PD+ 
Sbjct: 465 AGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVV 524

Query: 273 XXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
                               ++NE +  GI
Sbjct: 525 SYNIIIDGCILIDDSAGALAFFNEMRTRGI 554

[Close]

BLAST of Carg13428-RA vs. TrEMBL
Match: tr|A0A1S3CEG4|A0A1S3CEG4_CUCME (pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428-RA vs. TrEMBL
Match: tr|A0A1S3CFP9|A0A1S3CFP9_CUCME (pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428-RA vs. TrEMBL
Match: tr|A0A0A0K9Q1|A0A0A0K9Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.5e-124
Identity = 256/300 (85.33%), Postives = 269/300 (89.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME  LH  +A +F   S   TS V SMAS++ TP+FISSS SR L RTS QSSD LQRDP
Sbjct: 1   MELCLHSPDATVFRCFSTSFTSKVISMASVSSTPYFISSSHSRSLKRTSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILR+DAAI+AIERKANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRRDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKC+QPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKSISDCKPDVHTYSILIDCCTR RR DLLK ILADMS LGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYKEFQLMGI 300

[Close]

BLAST of Carg13428-RA vs. TrEMBL
Match: tr|F6HBC9|F6HBC9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00400 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.8e-95
Identity = 189/308 (61.36%), Postives = 225/308 (73.05%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGW-LSFPPTSTVASMASI-------NPTPFFISSSRSRKLNRTSDQS 60
           MEP  HLL+     W  S P T T  S+  +       NP   F+ + +     R+S  S
Sbjct: 1   MEP--HLLDPTSLRWSSSIPLTYTTCSLKVLKETKPTSNPPFLFVRAGK-----RSSGSS 60

Query: 61  SDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLK 120
            +GLQR PKK LSRILR +AAI  IERKANS+KY+ LWP+AVLEALDEAI+EN +E+ LK
Sbjct: 61  QNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALK 120

Query: 121 IFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAY 180
           IFGLLR+QHWYEPRC+TYTKLLMMLGKC+QPEQASLLF++MLSEGL+P++DVYTALVSAY
Sbjct: 121 IFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAY 180

Query: 181 GRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCN 240
           G SG L KA  TV++MKS+SDCKPDV+TYSILI CCT   R DL++ I  +MSYLGI C+
Sbjct: 181 GHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECS 240

Query: 241 TVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWY 300
           TVTYNTII+G+GKA MFE MES L EMIESG+CLPD+                     WY
Sbjct: 241 TVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWY 300

[Close]

BLAST of Carg13428-RA vs. TrEMBL
Match: tr|A0A2I4ECG7|A0A2I4ECG7_9ROSI (pentatricopeptide repeat-containing protein At3g53170 OS=Juglans regia OX=51240 GN=LOC108988308 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.4e-94
Identity = 193/260 (74.23%), Postives = 223/260 (85.77%), Query Frame = 0


Query: 42  SRKLNRTSDQS-SDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDE 101
           S +L++ S +S SDGLQ+D KK LSRILR DAA+  I RKANS+KY  LWP+AVLEALDE
Sbjct: 176 SIQLSKRSPKSISDGLQKDSKKDLSRILRTDAAVEGIARKANSRKYKQLWPKAVLEALDE 235

Query: 102 AIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKP 161
           AI+EN WET LKIFGLLRQQHWYE RC+TYTKLLMMLGKCRQP QASLLF+IMLSEGL+P
Sbjct: 236 AIRENQWETALKIFGLLRQQHWYEARCQTYTKLLMMLGKCRQPAQASLLFEIMLSEGLRP 295

Query: 162 SIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDI 221
           ++DVYTALVS+YG+ GLL KA+ T+++MKSISDCKPD++TYSILI CCT++ R DL+  I
Sbjct: 296 TLDVYTALVSSYGQCGLLDKALSTLEDMKSISDCKPDIYTYSILISCCTKFHRFDLIGRI 355

Query: 222 LADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXX 281
            A+MSYLGI C+TVTYNTIING+GK +MFE ME  L EMIES SCLPD+   XXXXXXXX
Sbjct: 356 RAEMSYLGIECSTVTYNTIINGYGKGEMFELMEDTLTEMIESESCLPDIFTLXXXXXXXX 415

Query: 282 XXXXXXXXXXWYNEFQLMGI 301
           XXXXXXXX  WYNEFQLMGI
Sbjct: 416 XXXXXXXXEEWYNEFQLMGI 435

The following BLAST results are available for this feature:

BLAST of Carg13428-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515060.1	4.5e-153	99.34	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita pepo subsp. pep...	[more]
XP_022960242.1	2.2e-152	99.00	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_0...	[more]
XP_023004532.1	3.6e-134	98.18	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita maxima]	[more]
XP_008461323.1	2.3e-125	85.33	PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cuc...	[more]
XP_008461329.1	2.3e-125	85.33	PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Cuc...	[more]

BLAST of Carg13428-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53170.1	3.6e-88	55.63	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48730.1	2.1e-51	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G06430.1	2.8e-40	45.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39620.1	5.0e-13	26.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09650.1	1.4e-10	24.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg13428-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SCP4\|PP279_ARATH	8.5e-87	59.85	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FKC3\|PP424_ARATH	3.7e-50	50.00	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
sp\|Q9SQU6\|PP216_ARATH	5.1e-39	45.58	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop...	[more]
sp\|Q9SV96\|PP358_ARATH	9.0e-12	26.56	Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop...	[more]
sp\|Q9SF38\|PP222_ARATH	2.5e-09	24.00	Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidop...	[more]

BLAST of Carg13428-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEG4\|A0A1S3CEG4_CUCME	1.5e-125	85.33	pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A1S3CFP9\|A0A1S3CFP9_CUCME	1.5e-125	85.33	pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A0A0K9Q1\|A0A0A0K9Q1_CUCSA	8.5e-124	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1	[more]
tr\|F6HBC9\|F6HBC9_VITVI	4.8e-95	61.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00400 PE=4 SV=...	[more]
tr\|A0A2I4ECG7\|A0A2I4ECG7_9ROSI	2.4e-94	74.23	pentatricopeptide repeat-containing protein At3g53170 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13428	Carg13428	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13428-RA.three_prime_UTR.1	Carg13428-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13428-RA.CDS.2	Carg13428-RA.CDS.2	CDS
Carg13428-RA.CDS.1	Carg13428-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13428-RA.exon.2	Carg13428-RA.exon.2	exon
Carg13428-RA.exon.1	Carg13428-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13428-RA	Carg13428-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 267..315 e-value: 4.7E-11 score: 42.6 coord: 409..454 e-value: 1.6E-10 score: 40.9 coord: 337..385 e-value: 1.9E-12 score: 47.0 coord: 160..208 e-value: 1.9E-11 score: 43.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 129..161 e-value: 7.3E-4 score: 17.5 coord: 412..444 e-value: 1.6E-8 score: 32.2 coord: 234..268 e-value: 4.0E-9 score: 34.1 coord: 164..198 e-value: 5.6E-6 score: 24.2 coord: 340..373 e-value: 2.2E-8 score: 31.8 coord: 270..303 e-value: 9.8E-7 score: 26.6 coord: 199..228 e-value: 0.0021 score: 16.1 coord: 306..338 e-value: 7.5E-9 score: 33.2 coord: 375..409 e-value: 8.5E-7 score: 26.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 234..263 e-value: 2.2E-7 score: 30.6 coord: 129..158 e-value: 0.039 score: 14.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 373..407 score: 10.117
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 443..473 score: 6.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 408..442 score: 10.83
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 268..302 score: 10.315
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 338..372 score: 11.367
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 303..337 score: 10.874
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 161..191 score: 8.791
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 232..266 score: 11.049
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..160 score: 9.405
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 8.736
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 368..471 e-value: 5.1E-21 score: 77.0 coord: 227..293 e-value: 3.4E-15 score: 58.0 coord: 62..226 e-value: 2.2E-36 score: 127.2 coord: 294..367 e-value: 4.4E-18 score: 67.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..63
None	No IPR available	PANTHER	PTHR24015:SF425	SUBFAMILY NOT NAMED	coord: 37..472
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 37..472