Carg13428 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13428
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Pentatricopeptide repeat
Location	Cucurbita_argyrosperma_scaffold_049 : 407366 .. 410580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGGTTTTTCGATCTTCTTTTTTAATCTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTCTTCGTTTTCAATGCTTGGAACTGATTGGAACTGATTGGAATTGATTCCTATGTAGTTAAGAATACTCTTTCTGTCTTTGTTGGATTTATAAGTGAAGAATGTTGAATCACGGCTCTTAACGAAAGCTCTAAATCGATGAGTCAGGATAAATTTAATCTTTAATTGCTTTCACACTCTTACGTATTCTTCATAGTGTATAAAATCATCAATCAACTCAAAAGTAAGTTCAATGAATTACCGTAAACTTAATCTTTTATTACGAGCTGATAACTTGAATATGAATGAAGTACGAATTCTACATGAATTGCGGCTAAAATGAACTATTTCTACTCTGTCATTGAGGAGAGATTACTCATCCAACTCCAATTCCATGACTGAATGGTTACTTTTTTGTGAAATTCTAAGTGTTCTCAATATCCTTCCAGAAGTCTTTAGCACTGGAAGTTATGTAAATCTTAGGAAATGAAAGACTAAATGGAGAATCCTCCCAAACTGTAGAGGCTATACCTTTCTTCAGAAAAGCTCTTGTTTTAGCAATCTCAACCCATTGGCCGAAACTTCTTCTTGTTGAGGATTATTGGAAAGAGTAGTCCCACGTTGGCTAATTAAGAGGAAAATCATGGGTTTATAAGTAAGGAATACATCTTTATTGGTATGAAGTCTTTTGGGGAAACCAAAAGCAAAGTCATTAGGGCTTATGCCCAAAAACAAAGCCATTAGAGCTTATGCTCAAAGTGGACAATATCATACTACTGTGAGAGCCCGTGATTCCTAACACTTCTACCTGAAATTTCTCTCACGACGGAATCAGGCTATCACTATTTGAGATGATATGTCAACGTACGGTGGTGTTCTCCTGAAGAAAAAACCTCTATAGCTGTTTTGGTAAGAGAGAGGCATTTCTGTTTCTGATATCTCCCATTCCCAGCCTGCCCAAAGAGCCATGTTTGCTTTGTTTCTGCTTTCAGAACCCTTACATCCTGTCTTGTTAGTGATCGCTTAAACCCATTTGAAATATTTCTTGAGAAGGAGCTTCTGAAGAACTTCTTATTCAAGGGGGTTATTACAAGAGCTTTCAAGGTAGCAGCTAACCAAACAACCGAGAATCCATCCAAAGAAGGCTCATATAGGTTTGAGAAATTTCTTTCCTTCATTTTTTTGAATTCAATTGCGAAAACAAAAAATTGATACAGCATTTCCATGATGAAAATGAAAAAGCTCATTACTAATGAACTGATTTTACCGTCCTATTTCAACAATAAGAGTTATGACCAAATAATTTTGTATATCTTTTCAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAGTGCTTATTTATGATTTTGGAAACGCCACGTTCAACGTAGCTCAACGGTTAAGGCATTACTACTAATCTCAGGAGGTTGTAGGTTTGAATCTTGCTGCTCCACATGTGATGTAGATTCAAAAGATAATGTTGGCATCTCACTCAGTTCTCCTGTCGTATATATGCTTCTTTGGAAACGCCACGTTCTGCCTACACGAGAAAATCTCTTGCTTTTTTAGTGCCTTTTCCTTCCAGCTGATTTTATGTTGTTCTCATGTACCAAAACTTTATGATCCTCTTACATCCCTTTTATATCCTATTGGTTTGATGCAAAGAGGTGGGCTCTAATAGAATTTGGCTTGGCTCGACAAGAAAACTGTAATATTCCAAGCTTACCGCTTGCAAATATTGTCTTCTTTGGGCTTTTTCTTTCGGGCTTCTTCCC

mRNA sequence

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAGTGCTTATTTATGATTTTGGAAACGCCACGTTCAACGTAGCTCAACGGTTAAGGCATTACTACTAATCTCAGGAGGTTGTAGGTTTGAATCTTGCTGCTCCACATGTGATGTAGATTCAAAAGATAATGTTGGCATCTCACTCAGTTCTCCTGTCGTATATATGCTTCTTTGGAAACGCCACGTTCTGCCTACACGAGAAAATCTCTTGCTTTTTTAGTGCCTTTTCCTTCCAGCTGATTTTATGTTGTTCTCATGTACCAAAACTTTATGATCCTCTTACATCCCTTTTATATCCTATTGGTTTGATGCAAAGAGGTGGGCTCTAATAGAATTTGGCTTGGCTCGACAAGAAAACTGTAATATTCCAAGCTTACCGCTTGCAAATATTGTCTTCTTTGGGCTTTTTCTTTCGGGCTTCTTCCC

Coding sequence (CDS)

ATGGAGCCTCACCTTCACCTTCTCAACGCCCCAATCTTCGGCTGGTTATCATTTCCCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTCTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCCCAAGAAAGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGAGCTGTTCTCGAGGCTCTCGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTGAGCAAGCAAGCTTGCTGTTTCAGATTATGTTGTCTGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATACCGTCGTCTTGACCTTCTGAAGGACATACTTGCTGACATGTCATATCTGGGGATTACATGTAATACAGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCTTATGGAAATAGTGAGCAGATCGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATTGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTACGACAAGATGGTGTCGGTTTTGAATTTCATGGAAAAACGCTTTTTCTCTCCAACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATGTTAAGAGGATGGAAGAATACTTCAGAAAAATGAAACATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGAAAGAGAATAAATGTTTGCCTGATAGCATTACATTTGCTACAATGGTTCATGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCGGTAGAGACGACAAGATAAATTAG

Protein sequence

MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNVKRMEEYFRKMKHQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMKENKCLPDSITFATMVHALKTHGMTEAAQRLENKLIVGRDDKIN

Homology

[Close]

BLAST of Carg13428 vs. NCBI nr
Match: XP_023515060.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 550.8 bits (1418), Expect = 4.5e-153
Identity = 299/301 (99.34%), Postives = 300/301 (99.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           MEPHLHL NAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP
Sbjct: 1   MEPHLHLSNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
           HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK
Sbjct: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII
Sbjct: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIE+GSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIETGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of Carg13428 vs. NCBI nr
Match: XP_022960242.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_022960243.1 pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_022960244.1 pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata])

HSP 1 Score: 548.5 bits (1412), Expect = 2.2e-152
Identity = 298/301 (99.00%), Postives = 300/301 (99.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           MEPHLHL NAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP
Sbjct: 1   MEPHLHLHNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
           HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLH+
Sbjct: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHE 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AIETVDEMKSISDCKPDVHTYSILIDCCTR+RRLDLLKDILADMSYLGITCNTVTYNTII
Sbjct: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300

Query: 301 E 302
           E
Sbjct: 301 E 301

[Close]

BLAST of Carg13428 vs. NCBI nr
Match: XP_023004532.1 (pentatricopeptide repeat-containing protein At3g53170 [Cucurbita maxima])

HSP 1 Score: 488.0 bits (1255), Expect = 3.6e-134
Identity = 270/275 (98.18%), Postives = 272/275 (98.91%), Query Frame = 0


Query: 27  MASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKY 86
           MASINPTP FISSSRSRKLNRTSDQSSDGLQRD KKGLSRILRKDAAIRAIERKANSKKY
Sbjct: 1   MASINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKY 60

Query: 87  NNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQA 146
           NNLWP AVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQP+QA
Sbjct: 61  NNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQA 120

Query: 147 SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID 206
           SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID
Sbjct: 121 SLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILID 180

Query: 207 CCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL 266
           CCTR+RRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL
Sbjct: 181 CCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCL 240

Query: 267 PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE 302
           PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE
Sbjct: 241 PDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGIE 275

[Close]

BLAST of Carg13428 vs. NCBI nr
Match: XP_008461323.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461324.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461325.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461327.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo] >XP_008461328.1 PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cucumis melo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.3e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428 vs. NCBI nr
Match: XP_008461329.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Cucumis melo])

HSP 1 Score: 458.8 bits (1179), Expect = 2.3e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428 vs. TAIR10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 322.8 bits (826), Expect = 3.6e-88
Identity = 163/293 (55.63%), Postives = 211/293 (72.01%), Query Frame = 0


Query: 8   LNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDPKKGLSRI 67
           +++P++ +   P  S   +M S       + + R+ K+N  S   S   Q DPKK LSRI
Sbjct: 33  ISSPVY-FRCIPTISITPTMCSTK-----VPNERTEKMN--SGLISTRHQVDPKKELSRI 92

Query: 68  LRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRC 127
           LR DAA++ IERKANS+KY  LWP+AVLEALDEAI+EN W++ LKIF LLR+QHWYEPRC
Sbjct: 93  LRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRC 152

Query: 128 KTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDE 187
           KTYTKL  +LG C+QP+QASLLF++MLSEGLKP+IDVYT+L+S YG+S LL KA  T++ 
Sbjct: 153 KTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEY 212

Query: 188 MKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAK 247
           MKS+SDCKPDV T+++LI CC +  R DL+K I+ +MSYLG+ C+TVTYNTII+G+GKA 
Sbjct: 213 MKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAG 272

Query: 248 MFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
           MFE+MES+L +MIE G  LPD+                     WY+ FQLMG+
Sbjct: 273 MFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGV 317

[Close]

BLAST of Carg13428 vs. TAIR10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 200.7 bits (509), Expect = 2.1e-51
Identity = 104/208 (50.00%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           +K +S ILR++A    IE+K  SKK   L PR VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WY+P    Y KL++MLGKC+QPE+A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPD 269
           + +GKAKMF +MES L++M+    C PD
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPD 291

[Close]

BLAST of Carg13428 vs. TAIR10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-40
Identity = 103/226 (45.58%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 74  IRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 133
           I+ +++K + +   N W   V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 134 LMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 193
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 194 CKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 253
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 254 SLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMG 300
            +L +M+ S +C    XXXXXXXXXXXXXXXXXXXXXWY +F+  G
Sbjct: 251 KVLSDMLVSTACXXXXXXXXXXXXXXXXXXXXXXXXXWYEKFRNFG 296

[Close]

BLAST of Carg13428 vs. TAIR10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 5.0e-13
Identity = 51/192 (26.56%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           ISS R      ++++ +  L R     +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q   A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRYR 216
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 217 RLDLLKDILADM 225
           ++D +  +  D+
Sbjct: 231 KVDQVNALFKDL 234

[Close]

BLAST of Carg13428 vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 36/150 (24.00%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 153 MLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD--CKPDVHTYSILIDCCTR 212
           +L +   P   +YT L+  Y ++G +      ++ M+   D    PD  TY+ ++     
Sbjct: 405 LLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVN 464

Query: 213 YRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLX 272
              +D  + +LA+M+ +G+  N +TYN ++ G+ K    ++ E LL EM E     PD+ 
Sbjct: 465 AGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVV 524

Query: 273 XXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
                               ++NE +  GI
Sbjct: 525 SYNIIIDGCILIDDSAGALAFFNEMRTRGI 554

[Close]

BLAST of Carg13428 vs. Swiss-Prot
Match: sp|Q9SCP4|PP279_ARATH (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 8.5e-87
Identity = 158/264 (59.85%), Postives = 199/264 (75.38%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           + + R+ K+N  S   S   Q DPKK LSRILR DAA++ IERKANS+KY  LWP+AVLE
Sbjct: 6   VPNERTEKMN--SGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLE 65

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
           ALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL  +LG C+QP+QASLLF++MLSE
Sbjct: 66  ALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSE 125

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDL 216
           GLKP+IDVYT+L+S YG+S LL KA  T++ MKS+SDCKPDV T+++LI CC +  R DL
Sbjct: 126 GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDL 185

Query: 217 LKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXX 276
           +K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G  LPD+       
Sbjct: 186 VKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSII 245

Query: 277 XXXXXXXXXXXXXXWYNEFQLMGI 301
                         WY+ FQLMG+
Sbjct: 246 GSYGNGRNMRKMESWYSRFQLMGV 267

[Close]

BLAST of Carg13428 vs. Swiss-Prot
Match: sp|Q9FKC3|PP424_ARATH (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 3.7e-50
Identity = 104/208 (50.00%), Postives = 141/208 (67.79%), Query Frame = 0


Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           +K +S ILR++A    IE+K  SKK   L PR VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WY+P    Y KL++MLGKC+QPE+A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPD 269
           + +GKAKMF +MES L++M+    C PD
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPD 291

[Close]

BLAST of Carg13428 vs. Swiss-Prot
Match: sp|Q9SQU6|PP216_ARATH (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.1e-39
Identity = 103/226 (45.58%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 74  IRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 133
           I+ +++K + +   N W   V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 134 LMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 193
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 194 CKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 253
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 254 SLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMG 300
            +L +M+ S +C    XXXXXXXXXXXXXXXXXXXXXWY +F+  G
Sbjct: 251 KVLSDMLVSTACXXXXXXXXXXXXXXXXXXXXXXXXXWYEKFRNFG 296

[Close]

BLAST of Carg13428 vs. Swiss-Prot
Match: sp|Q9SV96|PP358_ARATH (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-12
Identity = 51/192 (26.56%), Postives = 98/192 (51.04%), Query Frame = 0


Query: 37  ISSSRSRKLNRTSDQSSDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLE 96
           ISS R      ++++ +  L R     +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 97  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSE 156
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q   A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 157 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRYR 216
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 217 RLDLLKDILADM 225
           ++D +  +  D+
Sbjct: 231 KVDQVNALFKDL 234

[Close]

BLAST of Carg13428 vs. Swiss-Prot
Match: sp|Q9SF38|PP222_ARATH (Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF152 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-09
Identity = 36/150 (24.00%), Postives = 66/150 (44.00%), Query Frame = 0


Query: 153 MLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD--CKPDVHTYSILIDCCTR 212
           +L +   P   +YT L+  Y ++G +      ++ M+   D    PD  TY+ ++     
Sbjct: 405 LLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVN 464

Query: 213 YRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLX 272
              +D  + +LA+M+ +G+  N +TYN ++ G+ K    ++ E LL EM E     PD+ 
Sbjct: 465 AGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVV 524

Query: 273 XXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 301
                               ++NE +  GI
Sbjct: 525 SYNIIIDGCILIDDSAGALAFFNEMRTRGI 554

[Close]

BLAST of Carg13428 vs. TrEMBL
Match: tr|A0A1S3CEG4|A0A1S3CEG4_CUCME (pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428 vs. TrEMBL
Match: tr|A0A1S3CFP9|A0A1S3CFP9_CUCME (pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499948 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.5e-125
Identity = 256/300 (85.33%), Postives = 273/300 (91.00%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME +LH  +A IF   S   TSTV SM S++ TP+FISSS SR L R+S QSSD LQRDP
Sbjct: 1   MELYLHSPDATIFRCFSTSFTSTVISMTSMSSTPYFISSSHSRSLKRSSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILRKDAAI+AIE+KANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRKDAAIKAIEKKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKCRQPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCRQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKS+SDCKPDVHTYSILIDCCTR RR DLLK++LADMSYLGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSVSDCKPDVHTYSILIDCCTRLRRFDLLKELLADMSYLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY+EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYDEFQLMGI 300

[Close]

BLAST of Carg13428 vs. TrEMBL
Match: tr|A0A0A0K9Q1|A0A0A0K9Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 8.5e-124
Identity = 256/300 (85.33%), Postives = 269/300 (89.67%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGWLSFPPTSTVASMASINPTPFFISSSRSRKLNRTSDQSSDGLQRDP 60
           ME  LH  +A +F   S   TS V SMAS++ TP+FISSS SR L RTS QSSD LQRDP
Sbjct: 1   MELCLHSPDATVFRCFSTSFTSKVISMASVSSTPYFISSSHSRSLKRTSTQSSDALQRDP 60

Query: 61  KKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLKIFGLLRQQ 120
           KKGLSRILR+DAAI+AIERKANSKKYNNLWP+AVLEALDEAIQENLWET LKIFGLLRQQ
Sbjct: 61  KKGLSRILRRDAAIKAIERKANSKKYNNLWPKAVLEALDEAIQENLWETALKIFGLLRQQ 120

Query: 121 HWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 180
            WYEPRC+TYTKLLM+LGKC+QPEQASLLF+IM SEGLKPSIDVYTALVSAYG+SGLLHK
Sbjct: 121 QWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQSGLLHK 180

Query: 181 AIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCNTVTYNTII 240
           AI TVDEMKSISDCKPDVHTYSILIDCCTR RR DLLK ILADMS LGITCNTVTYNTII
Sbjct: 181 AISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVTYNTII 240

Query: 241 NGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWYNEFQLMGI 300
           NGFGKAKMFEQMESLLLEMIES SC PD XXXXXXXXXXXXXXXXXXXXXWY EFQLMGI
Sbjct: 241 NGFGKAKMFEQMESLLLEMIESDSCPPDXXXXXXXXXXXXXXXXXXXXXXWYKEFQLMGI 300

[Close]

BLAST of Carg13428 vs. TrEMBL
Match: tr|F6HBC9|F6HBC9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00400 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.8e-95
Identity = 189/308 (61.36%), Postives = 225/308 (73.05%), Query Frame = 0


Query: 1   MEPHLHLLNAPIFGW-LSFPPTSTVASMASI-------NPTPFFISSSRSRKLNRTSDQS 60
           MEP  HLL+     W  S P T T  S+  +       NP   F+ + +     R+S  S
Sbjct: 1   MEP--HLLDPTSLRWSSSIPLTYTTCSLKVLKETKPTSNPPFLFVRAGK-----RSSGSS 60

Query: 61  SDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDEAIQENLWETTLK 120
            +GLQR PKK LSRILR +AAI  IERKANS+KY+ LWP+AVLEALDEAI+EN +E+ LK
Sbjct: 61  QNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALDEAIRENRYESALK 120

Query: 121 IFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKPSIDVYTALVSAY 180
           IFGLLR+QHWYEPRC+TYTKLLMMLGKC+QPEQASLLF++MLSEGL+P++DVYTALVSAY
Sbjct: 121 IFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAY 180

Query: 181 GRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDILADMSYLGITCN 240
           G SG L KA  TV++MKS+SDCKPDV+TYSILI CCT   R DL++ I  +MSYLGI C+
Sbjct: 181 GHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECS 240

Query: 241 TVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXXXXXXXXXXXXWY 300
           TVTYNTII+G+GKA MFE MES L EMIESG+CLPD+                     WY
Sbjct: 241 TVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEKMEKWY 300

[Close]

BLAST of Carg13428 vs. TrEMBL
Match: tr|A0A2I4ECG7|A0A2I4ECG7_9ROSI (pentatricopeptide repeat-containing protein At3g53170 OS=Juglans regia OX=51240 GN=LOC108988308 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.4e-94
Identity = 193/260 (74.23%), Postives = 223/260 (85.77%), Query Frame = 0


Query: 42  SRKLNRTSDQS-SDGLQRDPKKGLSRILRKDAAIRAIERKANSKKYNNLWPRAVLEALDE 101
           S +L++ S +S SDGLQ+D KK LSRILR DAA+  I RKANS+KY  LWP+AVLEALDE
Sbjct: 176 SIQLSKRSPKSISDGLQKDSKKDLSRILRTDAAVEGIARKANSRKYKQLWPKAVLEALDE 235

Query: 102 AIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPEQASLLFQIMLSEGLKP 161
           AI+EN WET LKIFGLLRQQHWYE RC+TYTKLLMMLGKCRQP QASLLF+IMLSEGL+P
Sbjct: 236 AIRENQWETALKIFGLLRQQHWYEARCQTYTKLLMMLGKCRQPAQASLLFEIMLSEGLRP 295

Query: 162 SIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRYRRLDLLKDI 221
           ++DVYTALVS+YG+ GLL KA+ T+++MKSISDCKPD++TYSILI CCT++ R DL+  I
Sbjct: 296 TLDVYTALVSSYGQCGLLDKALSTLEDMKSISDCKPDIYTYSILISCCTKFHRFDLIGRI 355

Query: 222 LADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLXXXXXXXXXXX 281
            A+MSYLGI C+TVTYNTIING+GK +MFE ME  L EMIES SCLPD+   XXXXXXXX
Sbjct: 356 RAEMSYLGIECSTVTYNTIINGYGKGEMFELMEDTLTEMIESESCLPDIFTLXXXXXXXX 415

Query: 282 XXXXXXXXXXWYNEFQLMGI 301
           XXXXXXXX  WYNEFQLMGI
Sbjct: 416 XXXXXXXXEEWYNEFQLMGI 435

The following BLAST results are available for this feature:

BLAST of Carg13428 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515060.1	4.5e-153	99.34	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita pepo subsp. pep...	[more]
XP_022960242.1	2.2e-152	99.00	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita moschata] >XP_0...	[more]
XP_023004532.1	3.6e-134	98.18	pentatricopeptide repeat-containing protein At3g53170 [Cucurbita maxima]	[more]
XP_008461323.1	2.3e-125	85.33	PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X1 [Cuc...	[more]
XP_008461329.1	2.3e-125	85.33	PREDICTED: pentatricopeptide repeat-containing protein At3g53170 isoform X2 [Cuc...	[more]

BLAST of Carg13428 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G53170.1	3.6e-88	55.63	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48730.1	2.1e-51	50.00	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G06430.1	2.8e-40	45.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G39620.1	5.0e-13	26.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09650.1	1.4e-10	24.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Carg13428 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SCP4\|PP279_ARATH	8.5e-87	59.85	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]
sp\|Q9FKC3\|PP424_ARATH	3.7e-50	50.00	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
sp\|Q9SQU6\|PP216_ARATH	5.1e-39	45.58	Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop...	[more]
sp\|Q9SV96\|PP358_ARATH	9.0e-12	26.56	Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop...	[more]
sp\|Q9SF38\|PP222_ARATH	2.5e-09	24.00	Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidop...	[more]

BLAST of Carg13428 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CEG4\|A0A1S3CEG4_CUCME	1.5e-125	85.33	pentatricopeptide repeat-containing protein At3g53170 isoform X1 OS=Cucumis melo...	[more]
tr\|A0A1S3CFP9\|A0A1S3CFP9_CUCME	1.5e-125	85.33	pentatricopeptide repeat-containing protein At3g53170 isoform X2 OS=Cucumis melo...	[more]
tr\|A0A0A0K9Q1\|A0A0A0K9Q1_CUCSA	8.5e-124	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G426480 PE=4 SV=1	[more]
tr\|F6HBC9\|F6HBC9_VITVI	4.8e-95	61.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_13s0064g00400 PE=4 SV=...	[more]
tr\|A0A2I4ECG7\|A0A2I4ECG7_9ROSI	2.4e-94	74.23	pentatricopeptide repeat-containing protein At3g53170 OS=Juglans regia OX=51240 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13428-RA	Carg13428-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 267..315 e-value: 4.7E-11 score: 42.6 coord: 409..454 e-value: 1.6E-10 score: 40.9 coord: 337..385 e-value: 1.9E-12 score: 47.0 coord: 160..208 e-value: 1.9E-11 score: 43.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 129..161 e-value: 7.3E-4 score: 17.5 coord: 412..444 e-value: 1.6E-8 score: 32.2 coord: 234..268 e-value: 4.0E-9 score: 34.1 coord: 164..198 e-value: 5.6E-6 score: 24.2 coord: 340..373 e-value: 2.2E-8 score: 31.8 coord: 270..303 e-value: 9.8E-7 score: 26.6 coord: 199..228 e-value: 0.0021 score: 16.1 coord: 306..338 e-value: 7.5E-9 score: 33.2 coord: 375..409 e-value: 8.5E-7 score: 26.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 234..263 e-value: 2.2E-7 score: 30.6 coord: 129..158 e-value: 0.039 score: 14.1
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 373..407 score: 10.117
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 443..473 score: 6.084
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 408..442 score: 10.83
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 268..302 score: 10.315
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 338..372 score: 11.367
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 303..337 score: 10.874
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 161..191 score: 8.791
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 232..266 score: 11.049
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 126..160 score: 9.405
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 8.736
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 368..471 e-value: 5.1E-21 score: 77.0 coord: 227..293 e-value: 3.4E-15 score: 58.0 coord: 62..226 e-value: 2.2E-36 score: 127.2 coord: 294..367 e-value: 4.4E-18 score: 67.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..63
None	No IPR available	PANTHER	PTHR24015:SF425	SUBFAMILY NOT NAMED	coord: 37..472
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 37..472

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13428	Cla015261	Watermelon (97103) v1	carwmB0448
Carg13428	Csa7G426480	Cucumber (Chinese Long) v2	carcuB0484
Carg13428	ClCG09G003940	Watermelon (Charleston Gray)	carwcgB0440
Carg13428	CSPI07G19040	Wild cucumber (PI 183967)	carcpiB0489
Carg13428	Cucsa.128060	Cucumber (Gy14) v1	carcgyB0521
Carg13428	CmaCh08G005130	Cucurbita maxima (Rimu)	carcmaB0628
Carg13428	CmoCh08G005050	Cucurbita moschata (Rifu)	carcmoB0610
Carg13428	Lsi02G025530	Bottle gourd (USVL1VR-Ls)	carlsiB409
Carg13428	Cp4.1LG17g07970	Cucurbita pepo (Zucchini)	carcpeB0632
Carg13428	CsGy7G017430	Cucumber (Gy14) v2	carcgybB0461
Carg13428	CsaV3_7G030850	Cucumber (Chinese Long) v3	carcucB0486
Carg13428	Cla97C09G166200	Watermelon (97103) v2	carwmbB0473
Carg13428	Bhi09G000559	Wax gourd	carwgoB0546

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13428	Wax gourd	carwgoB0542
Carg13428	Silver-seed gourd	carcarB379
Carg13428	Silver-seed gourd	carcarB453
Carg13428	Silver-seed gourd	carcarB454
Carg13428	Cucumber (Gy14) v2	carcgybB0460
Carg13428	Cucurbita maxima (Rimu)	carcmaB0624
Carg13428	Cucurbita maxima (Rimu)	carcmaB0625
Carg13428	Cucurbita maxima (Rimu)	carcmaB0626
Carg13428	Cucurbita moschata (Rifu)	carcmoB0607
Carg13428	Cucurbita moschata (Rifu)	carcmoB0608
Carg13428	Cucurbita moschata (Rifu)	carcmoB0609
Carg13428	Cucurbita pepo (Zucchini)	carcpeB0631
Carg13428	Cucurbita pepo (Zucchini)	carcpeB0633
Carg13428	Cucurbita pepo (Zucchini)	carcpeB0634
Carg13428	Wild cucumber (PI 183967)	carcpiB0488
Carg13428	Cucumber (Chinese Long) v2	carcuB0483
Carg13428	Cucumber (Chinese Long) v3	carcucB0485
Carg13428	Bottle gourd (USVL1VR-Ls)	carlsiB410
Carg13428	Melon (DHL92) v3.5.1	carmeB0455
Carg13428	Melon (DHL92) v3.5.1	carmeB0457
Carg13428	Melon (DHL92) v3.6.1	carmedB0458
Carg13428	Melon (DHL92) v3.6.1	carmedB0460
Carg13428	Watermelon (Charleston Gray)	carwcgB0442
Carg13428	Watermelon (Charleston Gray)	carwcgB0443
Carg13428	Watermelon (97103) v1	carwmB0450
Carg13428	Watermelon (97103) v1	carwmB0452
Carg13428	Watermelon (97103) v2	carwmbB0471
Carg13428	Watermelon (97103) v2	carwmbB0474