Carg13421-RA (mRNA) Silver-seed gourd

NameCarg13421-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionF-box/wd-40 repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_049 : 362466 .. 365342 (+)
Sequence length1232
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTACTTCCTACATTACATTCAAGCGTGCATGAGAGATTGGGATGTAATTACTTTGCAATTCTGATATTAGCTTGTTTACGCTCTCATGTTTTCTGCAATTCCAGGTTATGAGACTTTGGTCGTCGGAGAACTTCAGATGTCTGGAAGAATATTCCATTCCGGAGAAACTGCCTCTAATTGACTTTGATTTTGATGAGAGCAAGGTAATATCAATATATCTCTTATAAGTATGCTGATGTTTTTGCTACTCGTCTAGAAAACTTTTGACAAAGCATGCTATTACTATATGAAAAGGTGAGTAGATGCATTCCTTCCTTTTCATCAGTTACTAAGCACTTTTTTGGGTGGAATTCTGAACCTTATTATTTCCCAATAGAGAACTGATATTTGCCAAATGAAATCTAATTTCTCAAGCCATTGTCTTGTCCTAGATTGTTGGTTTGGTTGGTAGAAACTTGTGCATTTGGAGTCGGAGTGGGAAACGAAGTATATTTCCTTCGCGTGAATGTACGTTTGTGGAGGGTTCATGTATGCGGTAAGTGGAAATACCTCCATAAATTTCTATCTGTTTTCAAAACTAACTTGTTTAACATCAATTTCTTTTTAATTACGTTTTAAACATTTTAATTTATCCATATATTTTCGTACTTATATTGATTTTGTCCTGTAATTTAACTTATCAATCCAATAGTCTCTGGTACACCAGTTTATGTTTATAATATGAAAGAATGATTGTCATTGCAGCCTTGGTCCACAGTCATTTGTAGACTTGAAGCGATTCTTCTCAATTTGTTTTCAATTAATTTGTATAATGAATCTTCCAATCCTGCTTACAGTTACTTTGATCCGGAGGCTGTTGTTGGTTGTGGAGATGGAACAGCTCATGTATTCGACATGTATAGTAGGAGATGCTCTAGAATTGTCAGGTAAACCAGAAGAAATATAAATGACATGACACTTCTCCTTCACCTGTTCTTTGGACTGAGGTTATTGACAGAAGTTTCGGCAATGACCGAACAGACGAGGAACAACCATTAGAAGTTGAGTTGGTGAAAATAACGTCACACAAATTTGATATTCATTACTTTTTCTTTCACCATGCACACAAACACTCGTGCTGACATTTTCACATTAGAATAAAAAGAGAGATCCATTTTGGTACGAACCAAAGGTTAATGGAAAACTAATTTTCAGGATTTATTATTACTTGTTTAGTTTTATGTAATTTCCTAAATGGTTGACATATCATGCACTTCTATCTTGACTTTTGTACCAATTTTGTTAATTTTACATTGCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGGGTGATGATCAGCTCATACTTGGGGGTTCCCTTCATGGAAACATTGGAGTATCGGGTCTTCGGTCTGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCATAGGTCATGCATATGGCAGTCTTACTTTTGCACCTTTCTCTTCTCCTTGTCTCGTCGTTTAAAAATTTTCTCTGTCTCGGACTTTCTGAATCAAATATAACACGATAAATCGTCCTCTGAATTAGAGACAAGAATAGAAGCAACTCAAGCAGTGTAGTTTAACATCTGAAGTAAACAAACAGTCTCAAGTAGTTTGCATATAGCTAATCTAACCGTCCTTCTCAAAGCACTTAAAAAAAATTCTTTTCAACTAGAGAACATTTATAGATTTCCTTGTGGTTAGTTCGTTCCCTTCGTGTACATATATCGAAAAGTAATTCCTTTCCACTCAGATTTGTTTTAGTGTATATTTTATTACAATTTCTGCTTGCAGGCATAAAGACCATGTGTTACAATGCTTCTTCACATTTAGTCTTTGCGGGATCAACTGCCGGACATGTCTATTGTTGGGACCTCAGGTAAGTAAAAAGTAATTTAGATGTAACTTCAGTAAATTGGTCTGGTCACTGATGGTATCCAACAAAAACAATAAGTTAATGGAAGATAGCTTCAGGCCCAGAAATGAATAGCTTTAACCAACATTGAATTTCCATTGCTGTTTGAATACTGAAACAAAATGAAATTATTTACTTCCGAAGGGAAGAAAAGTTCTGATTTTACAATTCTTGCTGTCTATGATGTTCTAAATTCGGACCGTGTCATTTATTTATTTACTGCTTTAGTCCCTTTCTTCAAATTATATTCTCTAATTGAGCTCTGCACATTTCTTAGGACAATGAAACCTTTATGGGAATCCCGAGTGAGCCCAAATGTCGTATATTCTTTACGACACCTCCAAAATGACAGGTCAAGTTTGGCTGTTGGTGGAATAGATGGCATTCTACGTATTTTGGATCAGAATACAGGCACGGTGCGGTCGGGTTGTATTGTGGATAGTAGACTGTTATCGACGTATCAGAGCGGGGTTGGAGTCGTGGAAGAAAGGATAGGAAATAGACTGTCAGATGAAACTCCTATTGATGCCATACACAGAAGGAGTAGGCCTCCGATCACAAGCTTAGCCGTTGGGATGAACAAGATAGTCACAACGCACAACGACAAGTTCATTAGATTATGGAAGTTCCGAAACTAGTCTTTCCCCAGGCTGGGATTCATGGTTCTTTGTTTTGCTCTTATTTACTGTACATATTTTCGTAACTTCTTTTTTTCTTTTTGTGGATGAATTTTGTGGTCAGCAATGTGGAATTATGTAGATAGAACGTTTGATTTCCAGTGAACTTTCTAGGTTACAATCCACTGGATGGGGATAATATTTTGGGTTCTTTTTAGTATTAATACTATTTTAGCTCCTAAGATTCTTCTTTATATATATACATGTATACATGTATGTATGTGTATGTATGTAGATATATGTGTATGTATGTATGTGTATGTGTG

mRNA sequence

ATGGAGTACTTCCTACATTACATTCAAGCGTGCATGAGAGATTGGGATGTTATGAGACTTTGGTCGTCGGAGAACTTCAGATGTCTGGAAGAATATTCCATTCCGGAGAAACTGCCTCTAATTGACTTTGATTTTGATGAGAGCAAGATTGTTGGTTTGGTTGGTAGAAACTTGTGCATTTGGAGTCGGAGTGGGAAACGAAGTATATTTCCTTCGCGTGAATGTACGTTTGTGGAGGGTTCATGTATGCGTTACTTTGATCCGGAGGCTGTTGTTGGTTGTGGAGATGGAACAGCTCATGTATTCGACATGTATAGTAGGAGATGCTCTAGAATTGTCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGGGTGATGATCAGCTCATACTTGGGGGTTCCCTTCATGGAAACATTGGAGTATCGGGTCTTCGGTCTGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCATAGGCATAAAGACCATGTGTTACAATGCTTCTTCACATTTAGTCTTTGCGGGATCAACTGCCGGACATGTCTATTGTTGGGACCTCAGGACAATGAAACCTTTATGGGAATCCCGAGTGAGCCCAAATGTCGTATATTCTTTACGACACCTCCAAAATGACAGGTCAAGTTTGGCTGTTGGTGGAATAGATGGCATTCTACGTATTTTGGATCAGAATACAGGCACGGTGCGGTCGGGTTGTATTGTGGATAGTAGACTGTTATCGACGTATCAGAGCGGGGTTGGAGTCGTGGAAGAAAGGATAGGAAATAGACTGTCAGATGAAACTCCTATTGATGCCATACACAGAAGGAGTAGGCCTCCGATCACAAGCTTAGCCGTTGGGATGAACAAGATAGTCACAACGCACAACGACAAGTTCATTAGATTATGGAAGTTCCGAAACTAGTCTTTCCCCAGGCTGGGATTCATGGTTCTTTGTTTTGCTCTTATTTACTGTACATATTTTCGTAACTTCTTTTTTTCTTTTTGTGGATGAATTTTGTGGTCAGCAATGTGGAATTATGTAGATAGAACGTTTGATTTCCAGTGAACTTTCTAGGTTACAATCCACTGGATGGGGATAATATTTTGGGTTCTTTTTAGTATTAATACTATTTTAGCTCCTAAGATTCTTCTTTATATATATACATGTATACATGTATGTATGTGTATGTATGTAGATATATGTGTATGTATGTATGTGTATGTGTG

Coding sequence (CDS)

ATGGAGTACTTCCTACATTACATTCAAGCGTGCATGAGAGATTGGGATGTTATGAGACTTTGGTCGTCGGAGAACTTCAGATGTCTGGAAGAATATTCCATTCCGGAGAAACTGCCTCTAATTGACTTTGATTTTGATGAGAGCAAGATTGTTGGTTTGGTTGGTAGAAACTTGTGCATTTGGAGTCGGAGTGGGAAACGAAGTATATTTCCTTCGCGTGAATGTACGTTTGTGGAGGGTTCATGTATGCGTTACTTTGATCCGGAGGCTGTTGTTGGTTGTGGAGATGGAACAGCTCATGTATTCGACATGTATAGTAGGAGATGCTCTAGAATTGTCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGGGTGATGATCAGCTCATACTTGGGGGTTCCCTTCATGGAAACATTGGAGTATCGGGTCTTCGGTCTGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCATAGGCATAAAGACCATGTGTTACAATGCTTCTTCACATTTAGTCTTTGCGGGATCAACTGCCGGACATGTCTATTGTTGGGACCTCAGGACAATGAAACCTTTATGGGAATCCCGAGTGAGCCCAAATGTCGTATATTCTTTACGACACCTCCAAAATGACAGGTCAAGTTTGGCTGTTGGTGGAATAGATGGCATTCTACGTATTTTGGATCAGAATACAGGCACGGTGCGGTCGGGTTGTATTGTGGATAGTAGACTGTTATCGACGTATCAGAGCGGGGTTGGAGTCGTGGAAGAAAGGATAGGAAATAGACTGTCAGATGAAACTCCTATTGATGCCATACACAGAAGGAGTAGGCCTCCGATCACAAGCTTAGCCGTTGGGATGAACAAGATAGTCACAACGCACAACGACAAGTTCATTAGATTATGGAAGTTCCGAAACTAG

Protein sequence

MEYFLHYIQACMRDWDVMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
BLAST of Carg13421-RA vs. NCBI nr
Match: XP_022960484.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita moschata])

HSP 1 Score: 606.7 bits (1563), Expect = 4.4e-170
Identity = 291/292 (99.66%), Postives = 292/292 (100.00%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT
Sbjct: 142 VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 201

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL
Sbjct: 202 FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 261

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
           HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE
Sbjct: 262 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 321

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGV
Sbjct: 322 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGV 381

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Sbjct: 382 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 433

BLAST of Carg13421-RA vs. NCBI nr
Match: XP_022960485.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Cucurbita moschata])

HSP 1 Score: 606.7 bits (1563), Expect = 4.4e-170
Identity = 291/292 (99.66%), Postives = 292/292 (100.00%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT
Sbjct: 68  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 127

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL
Sbjct: 128 FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 187

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
           HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE
Sbjct: 188 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 247

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGV
Sbjct: 248 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGV 307

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Sbjct: 308 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 359

BLAST of Carg13421-RA vs. NCBI nr
Match: XP_023513732.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 606.7 bits (1563), Expect = 4.4e-170
Identity = 291/292 (99.66%), Postives = 292/292 (100.00%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT
Sbjct: 68  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 127

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL
Sbjct: 128 FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 187

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
           HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE
Sbjct: 188 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 247

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGV
Sbjct: 248 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGV 307

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Sbjct: 308 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 359

BLAST of Carg13421-RA vs. NCBI nr
Match: XP_023513731.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 606.7 bits (1563), Expect = 4.4e-170
Identity = 291/292 (99.66%), Postives = 292/292 (100.00%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT
Sbjct: 142 VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 201

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL
Sbjct: 202 FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 261

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
           HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE
Sbjct: 262 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 321

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGV
Sbjct: 322 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGV 381

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Sbjct: 382 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 433

BLAST of Carg13421-RA vs. NCBI nr
Match: XP_023004546.1 (F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita maxima])

HSP 1 Score: 605.9 bits (1561), Expect = 7.6e-170
Identity = 290/292 (99.32%), Postives = 292/292 (100.00%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRN+CIWSRSGKRSIFPSRECT
Sbjct: 142 VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNMCIWSRSGKRSIFPSRECT 201

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL
Sbjct: 202 FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 261

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
           HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE
Sbjct: 262 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 321

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGV
Sbjct: 322 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIMDSRLLSTYQSGVGV 381

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Sbjct: 382 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 433

BLAST of Carg13421-RA vs. TAIR10
Match: AT3G52030.1 (F-box family protein with WD40/YVTN repeat doamin)

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-89
Identity = 163/313 (52.08%), Postives = 212/313 (67.73%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVG 76
           VMRLWS ++++C+EEYS+P+   LIDFDFDESK                     IVGLVG
Sbjct: 139 VMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVG 198

Query: 77  RNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRM 136
             + IW R+G+RSIFPSR  TF +G CMRY DPEAVVGC DGTA VFDMYS+ CS+I+R 
Sbjct: 199 TRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRT 258

Query: 137 LPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLV 196
             GP+TCL + D+QL L GS  G + VS    DQ VA L+S  T  GI+T+C+N  ++L 
Sbjct: 259 QGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLA 318

Query: 197 FAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTG 256
           F G+T G+V CWDLR M  LWE RVSPNVVYS++ L+ND S +  GGIDG+LR++DQ +G
Sbjct: 319 FIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSG 378

Query: 257 TVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV 307
            V S  I+D +  +T  ++   V+E+R G R+S +  ID I R+ RP I+ +A+GM K+V
Sbjct: 379 RVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMV 438

BLAST of Carg13421-RA vs. Swiss-Prot
Match: sp|Q9SV01|FBW4_ARATH (F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 GN=At3g52030 PE=4 SV=2)

HSP 1 Score: 326.6 bits (836), Expect = 2.9e-88
Identity = 163/313 (52.08%), Postives = 212/313 (67.73%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVG 76
           VMRLWS ++++C+EEYS+P+   LIDFDFDESK                     IVGLVG
Sbjct: 139 VMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVG 198

Query: 77  RNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRM 136
             + IW R+G+RSIFPSR  TF +G CMRY DPEAVVGC DGTA VFDMYS+ CS+I+R 
Sbjct: 199 TRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRT 258

Query: 137 LPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLV 196
             GP+TCL + D+QL L GS  G + VS    DQ VA L+S  T  GI+T+C+N  ++L 
Sbjct: 259 QGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLA 318

Query: 197 FAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTG 256
           F G+T G+V CWDLR M  LWE RVSPNVVYS++ L+ND S +  GGIDG+LR++DQ +G
Sbjct: 319 FIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSG 378

Query: 257 TVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV 307
            V S  I+D +  +T  ++   V+E+R G R+S +  ID I R+ RP I+ +A+GM K+V
Sbjct: 379 RVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMV 438

BLAST of Carg13421-RA vs. TrEMBL
Match: tr|A0A0A0KBD6|A0A0A0KBD6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420840 PE=4 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 2.1e-147
Identity = 248/292 (84.93%), Postives = 271/292 (92.81%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWS ENFRCLEEYS+PEK+PL+DFDFD  KIVGL+GR LCIWSRSGKRSIFPSRECT
Sbjct: 142 VMRLWSPENFRCLEEYSVPEKMPLVDFDFDVGKIVGLIGRQLCIWSRSGKRSIFPSRECT 201

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           F +G CMRYFD EAVVGC DGTAHVFDMYSRRCSRI+RMLPGPVTCLCV DDQL+ GGSL
Sbjct: 202 FEKGLCMRYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVNDDQLMFGGSL 261

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
            GNIGVSG+RSDQRV MLRSRNT+GI+T+CYNASS LVFAGSTAGHVYCWDLRTMK LWE
Sbjct: 262 LGNIGVSGVRSDQRVVMLRSRNTVGIRTLCYNASSRLVFAGSTAGHVYCWDLRTMKSLWE 321

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNV+YSL+HLQNDRSSLAVGGIDGILRILDQNTGTV+S C++DSRLLST+Q G+G+
Sbjct: 322 SRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTVQSCCMMDSRLLSTHQDGLGI 381

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEER G RLSDETPID I RR+RP ITSLAVGMNKIVTTHNDKFI+LWKF++
Sbjct: 382 VEERRGKRLSDETPIDTIDRRNRPSITSLAVGMNKIVTTHNDKFIKLWKFQS 433

BLAST of Carg13421-RA vs. TrEMBL
Match: tr|A0A1S3CEH9|A0A1S3CEH9_CUCME (F-box/WD-40 repeat-containing protein At3g52030 OS=Cucumis melo OX=3656 GN=LOC103499956 PE=4 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 2.7e-147
Identity = 252/292 (86.30%), Postives = 270/292 (92.47%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWS ENFRCLEEYSIPEK+PLIDFDFD  KIVGLVG+ LCIWSRSGKRSIFPSRECT
Sbjct: 142 VMRLWSPENFRCLEEYSIPEKVPLIDFDFDVGKIVGLVGKQLCIWSRSGKRSIFPSRECT 201

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           F +G CMRY D EAVVGC DGTAHVFDMYSRRCSRI+RMLPGPVTCLCV DDQL+ GGSL
Sbjct: 202 FEKGLCMRYLDAEAVVGCEDGTAHVFDMYSRRCSRIIRMLPGPVTCLCVNDDQLMFGGSL 261

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
            GNIGVSGLRSDQRV MLRSRNT+GI+T+CYN SS LVFAGSTAGHVYCWDLRTMK LWE
Sbjct: 262 LGNIGVSGLRSDQRVVMLRSRNTVGIRTLCYNDSSRLVFAGSTAGHVYCWDLRTMKSLWE 321

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           SRVSPNV+YSL+HLQNDRSSLAVGGIDGILRILDQNTGTVRS C++DSRLLST+Q+G+G 
Sbjct: 322 SRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTVRSCCMMDSRLLSTHQNGLGT 381

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
           VEER G RLSDETPIDAI RR+RP ITSLAVGMNKIVTTHNDKFIRLWKF++
Sbjct: 382 VEERRGKRLSDETPIDAIDRRNRPSITSLAVGMNKIVTTHNDKFIRLWKFQS 433

BLAST of Carg13421-RA vs. TrEMBL
Match: tr|A0A2I4ECY0|A0A2I4ECY0_9ROSI (F-box/WD-40 repeat-containing protein At3g52030 OS=Juglans regia OX=51240 GN=LOC108988437 PE=4 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 4.0e-119
Identity = 199/291 (68.38%), Postives = 245/291 (84.19%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWS E+++C+EEYS P+ +PL+DFDFDESKIVGLVG  +CIWSR+GKRSIFPS + T
Sbjct: 139 VMRLWSLESYKCVEEYSAPDTIPLVDFDFDESKIVGLVGTRMCIWSRNGKRSIFPSSQGT 198

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FV+G CMRY+DPEAVVGC DGTA VFD+YSR+CSRI+RM  GPV CLC+ DD LIL GS 
Sbjct: 199 FVKGLCMRYYDPEAVVGCEDGTARVFDIYSRKCSRIIRMHAGPVKCLCLSDDHLILSGSS 258

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWE 196
            G+I VSG+ SDQRVA LRS ++ GI+++CYNASSHLVFAGSTAG+  CWDLRTM+ LWE
Sbjct: 259 LGSITVSGISSDQRVATLRSTDSTGIRSLCYNASSHLVFAGSTAGYASCWDLRTMRSLWE 318

Query: 197 SRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGV 256
           +RVSPNVVYSL+HL+ND S+L VGGIDG+LRILDQNTG V S C+++  +LST Q+ +G 
Sbjct: 319 TRVSPNVVYSLQHLRNDTSTLVVGGIDGVLRILDQNTGQVLSSCVMEGNMLSTSQNTLGA 378

Query: 257 VEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFR 308
           +  + G RLS++T ID+I +  RPPIT LAVGMNK+VTTHN ++IRLWKF+
Sbjct: 379 IGRKKGRRLSEDTSIDSIPKSDRPPITCLAVGMNKVVTTHNSRYIRLWKFK 429

BLAST of Carg13421-RA vs. TrEMBL
Match: tr|A0A2N9J669|A0A2N9J669_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59977 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 9.3e-116
Identity = 197/293 (67.24%), Postives = 242/293 (82.59%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWS E+++C EEYS+P+ +PL+DFDFDESKIVGLVG  +CIW R+GKRSIFPS E T
Sbjct: 70  VMRLWSLESYKCREEYSVPDTVPLVDFDFDESKIVGLVGTRICIWRRNGKRSIFPSNEGT 129

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FV+G CMRY+DPEAVVGC DGTA +FDMYSR+CSRI+RM  GPVTCLC+ DDQLIL GS 
Sbjct: 130 FVKGLCMRYYDPEAVVGCEDGTARLFDMYSRKCSRIIRMRAGPVTCLCLSDDQLILSGSS 189

Query: 137 HGNIGVSGLRSDQRVAMLRSR-NTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLW 196
            G+I VSG+ SDQRVA LRSR  T GI+T+CYNA S LVFAGST+G+  CWDLRTM+ LW
Sbjct: 190 FGSITVSGVLSDQRVATLRSRITTGGIRTLCYNACSRLVFAGSTSGYTSCWDLRTMRSLW 249

Query: 197 ESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVG 256
           E+RVSPNVVYSL+H +ND+S+L VGGIDG+LRILDQNTG V + C+++  +LS+ Q+  G
Sbjct: 250 ETRVSPNVVYSLQHQRNDKSTLVVGGIDGVLRILDQNTGQVLTSCVMEGNVLSSSQNKYG 309

Query: 257 VVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
             E + G RLS++T ID+I + +RPPIT LAVGM K+VT HN ++IRLWKF +
Sbjct: 310 AAERKKGRRLSEDTHIDSIPKSARPPITCLAVGMKKVVTLHNGRYIRLWKFNS 362

BLAST of Carg13421-RA vs. TrEMBL
Match: tr|A0A2P4JLC9|A0A2P4JLC9_QUESU (F-box/wd-40 repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_62411 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.2e-115
Identity = 198/293 (67.58%), Postives = 242/293 (82.59%), Query Frame = 0

Query: 17  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECT 76
           VMRLWS E+++C+EEY++P+ +PL+DFDFDESKIVGLVG  +CIW R+GKRSIFPS E T
Sbjct: 139 VMRLWSLESYKCVEEYAVPDTVPLVDFDFDESKIVGLVGTRICIWRRNGKRSIFPSNEGT 198

Query: 77  FVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSL 136
           FV+G CMRY DPEAVVGC DGTA +FDMYSR+CSRI+RM  GPVTCLC+ DDQLIL GS 
Sbjct: 199 FVKGLCMRYNDPEAVVGCEDGTARLFDMYSRKCSRIIRMRAGPVTCLCLSDDQLILSGSS 258

Query: 137 HGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLW 196
            G+I VSG+ SDQ+VA LRSR TI GIKT+CYNA SHLVFAGSTAG+  CWDLRTM+ LW
Sbjct: 259 LGSITVSGILSDQQVATLRSRITIGGIKTLCYNACSHLVFAGSTAGYTSCWDLRTMRSLW 318

Query: 197 ESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVG 256
           E+RVSPNVVYS++HL++D+S+L VGGIDG+LR LDQNTG V + C+++   LS+ Q+  G
Sbjct: 319 ETRVSPNVVYSVQHLRSDKSTLVVGGIDGVLRTLDQNTGQVLANCVMEGNALSSSQNTYG 378

Query: 257 VVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN 309
             E+R G RLS+  PID+I + +RPPIT LAVGM K+VT HN + IRLWKF +
Sbjct: 379 ATEKRKGRRLSEGMPIDSIPKSARPPITCLAVGMKKVVTAHNGRHIRLWKFNS 431

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022960484.14.4e-17099.66F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita moschata][more]
XP_022960485.14.4e-17099.66F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Cucurbita moschata][more]
XP_023513732.14.4e-17099.66F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Cucurbita pepo subsp... [more]
XP_023513731.14.4e-17099.66F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita pepo subsp... [more]
XP_023004546.17.6e-17099.32F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT3G52030.11.6e-8952.08F-box family protein with WD40/YVTN repeat doamin[more]
Match NameE-valueIdentityDescription
sp|Q9SV01|FBW4_ARATH2.9e-8852.08F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KBD6|A0A0A0KBD6_CUCSA2.1e-14784.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420840 PE=4 SV=1[more]
tr|A0A1S3CEH9|A0A1S3CEH9_CUCME2.7e-14786.30F-box/WD-40 repeat-containing protein At3g52030 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2I4ECY0|A0A2I4ECY0_9ROSI4.0e-11968.38F-box/WD-40 repeat-containing protein At3g52030 OS=Juglans regia OX=51240 GN=LOC... [more]
tr|A0A2N9J669|A0A2N9J669_FAGSY9.3e-11667.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59977 PE=4 SV=1[more]
tr|A0A2P4JLC9|A0A2P4JLC9_QUESU1.2e-11567.58F-box/wd-40 repeat-containing protein OS=Quercus suber OX=58331 GN=CFP56_62411 P... [more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg13421Carg13421gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13421-RA.exon.1Carg13421-RA.exon.1exon
Carg13421-RA.exon.2Carg13421-RA.exon.2exon
Carg13421-RA.exon.3Carg13421-RA.exon.3exon
Carg13421-RA.exon.4Carg13421-RA.exon.4exon
Carg13421-RA.exon.5Carg13421-RA.exon.5exon
Carg13421-RA.exon.6Carg13421-RA.exon.6exon
Carg13421-RA.exon.7Carg13421-RA.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13421-RA.CDS.1Carg13421-RA.CDS.1CDS
Carg13421-RA.CDS.2Carg13421-RA.CDS.2CDS
Carg13421-RA.CDS.3Carg13421-RA.CDS.3CDS
Carg13421-RA.CDS.4Carg13421-RA.CDS.4CDS
Carg13421-RA.CDS.5Carg13421-RA.CDS.5CDS
Carg13421-RA.CDS.6Carg13421-RA.CDS.6CDS
Carg13421-RA.CDS.7Carg13421-RA.CDS.7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13421-RA.three_prime_UTR.1Carg13421-RA.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg13421-RACarg13421-RA-proteinpolypeptide


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 106..144
e-value: 120.0
score: 3.8
coord: 68..103
e-value: 360.0
score: 0.8
coord: 267..305
e-value: 25.0
score: 8.2
coord: 190..230
e-value: 7.4
score: 11.5
coord: 147..187
e-value: 1.2
score: 16.4
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 8..308
e-value: 4.0E-26
score: 93.4
NoneNo IPR availablePANTHERPTHR13720WD-40 REPEAT PROTEINcoord: 78..236
coord: 170..306
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 18..233
coord: 281..305