Carg13214-RA (mRNA) Silver-seed gourd

Overview
NameCarg13214-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_038 : 55722 .. 56447 (+)
Sequence length518
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCGTACGTAGTTTCTTCTTTTTGTGTTCACCAAATTTTCCCGAGAAAGGCGCAGGGGCTTGTTTGTTTCTCTGGAATTTGATTTTCTCGAGAAAATTCTGACTCTGTGTTTGATTTATTTTGTGTGTAGATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGTTTTTACAAGTTTTTAATATAAGATTTTGATCTTTTATTTGTTCGTTTTATAGATTATATTTGTGTTTTTTGTAAAGCAGGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGCTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTTTAAATCAATAAGTTTGATGTGCTCAAAACTTTAATCTTCCAACTC

mRNA sequence

AAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGCTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTTTAAATCAATAAGTTTGATGTGCTCAAAACTTTAATCTTCCAACTC

Coding sequence (CDS)

ATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAA

Protein sequence

MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRELVRRLQMWSELQLRPMQLQMKGVGVFDMKRHKLE
Homology
[Close]
BLAST of Carg13214-RA vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 30
          MPKCGCGSACNCDLNNCSCKHDAAPIMKQ
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 81

[Close]
BLAST of Carg13214-RA vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMK 29
          MPKCGCGSACNCDLNNCSCKHDAAPIMK
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMK 80

The following BLAST results are available for this feature:
BLAST of Carg13214-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966636.12.7e-09100.00uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima][more]
XP_022966635.11.0e-08100.00uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima][more]
BLAST of Carg13214-RA vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg13214-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg13214-RA vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg13214Carg13214gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg13214-RACarg13214-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13214-RA.exon.1Carg13214-RA.exon.1exon
Carg13214-RA.exon.2Carg13214-RA.exon.2exon
Carg13214-RA.exon.3Carg13214-RA.exon.3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13214-RA.five_prime_UTR.1Carg13214-RA.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13214-RA.CDS.1Carg13214-RA.CDS.1CDS
Carg13214-RA.CDS.2Carg13214-RA.CDS.2CDS
Carg13214-RA.CDS.3Carg13214-RA.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg13214-RA.three_prime_UTR.1Carg13214-RA.three_prime_UTR.1three_prime_UTR