Carg13214 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13214
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_038 : 55722 .. 56447 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCGTACGTAGTTTCTTCTTTTTGTGTTCACCAAATTTTCCCGAGAAAGGCGCAGGGGCTTGTTTGTTTCTCTGGAATTTGATTTTCTCGAGAAAATTCTGACTCTGTGTTTGATTTATTTTGTGTGTAGATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGTTTTTACAAGTTTTTAATATAAGATTTTGATCTTTTATTTGTTCGTTTTATAGATTATATTTGTGTTTTTTGTAAAGCAGGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGCTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTTTAAATCAATAAGTTTGATGTGCTCAAAACTTTAATCTTCCAACTC

mRNA sequence

AAATGAGCAAGCTTCAAGTTTCCGATCAAAATCAAAGCACTTGAGTTCCGTTGGTCGTTTAAGAAGAAAGAAGAAAAATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAAGGGTTGGGTATGGTTCTGTGTGTTTGTGTGTGTAAGGTGTTTGACAAAATGCCGCTTACAAATACTTCAAAGAAATAATGAACCACATATATCTATGTACCTTTGTTTTCTAATGTTATTTCAAATGGGCTGCTTATGACTGCCCAATTTCTATTATTATTATTATTATTATTATTTTAAATCAATAAGTTTGATGTGCTCAAAACTTTAATCTTCCAACTC

Coding sequence (CDS)

ATGCCGAAGTGTGGATGTGGCTCTGCCTGCAACTGCGATCTCAACAACTGCTCATGCAAACATGATGCCGCTCCCATCATGAAACAGTATGAATTTCCAGCCATCATTCGTGAACTTGTCAGGCGGCTGCAAATGTGGAGCGAATTGCAGTTGCGACCCATGCAACTGCAAATGAAAGGCGTCGGAGTTTTCGATATGAAAAGGCATAAATTAGAGTAA

Protein sequence

MPKCGCGSACNCDLNNCSCKHDAAPIMKQYEFPAIIRELVRRLQMWSELQLRPMQLQMKGVGVFDMKRHKLE

Homology

[Close]

BLAST of Carg13214 vs. NCBI nr
Match: XP_022966636.1 (uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 30
          MPKCGCGSACNCDLNNCSCKHDAAPIMKQ
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMKQ 81

[Close]

BLAST of Carg13214 vs. NCBI nr
Match: XP_022966635.1 (uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0


Query: 1  MPKCGCGSACNCDLNNCSCKHDAAPIMK 29
          MPKCGCGSACNCDLNNCSCKHDAAPIMK
Sbjct: 53 MPKCGCGSACNCDLNNCSCKHDAAPIMK 80

The following BLAST results are available for this feature:

BLAST of Carg13214 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966636.1	2.7e-09	100.00	uncharacterized protein LOC111466261 isoform X2 [Cucurbita maxima]	[more]
XP_022966635.1	1.0e-08	100.00	uncharacterized protein LOC111466261 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg13214 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13214 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13214 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13214-RA	Carg13214-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13214	CmaCh07G009970	Cucurbita maxima (Rimu)	carcmaB0818
Carg13214	CmoCh07G010400	Cucurbita moschata (Rifu)	carcmoB0795
Carg13214	Cp4.1LG19g03480	Cucurbita pepo (Zucchini)	carcpeB0830

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13214	Silver-seed gourd	carcarB532
Carg13214	Cucumber (Gy14) v2	carcgybB0581
Carg13214	Cucumber (Gy14) v1	carcgyB0653
Carg13214	Cucurbita maxima (Rimu)	carcmaB0815
Carg13214	Cucurbita moschata (Rifu)	carcmoB0791
Carg13214	Cucurbita pepo (Zucchini)	carcpeB0825
Carg13214	Wild cucumber (PI 183967)	carcpiB0613
Carg13214	Cucumber (Chinese Long) v2	carcuB0607
Carg13214	Cucumber (Chinese Long) v3	carcucB0614
Carg13214	Bottle gourd (USVL1VR-Ls)	carlsiB526
Carg13214	Melon (DHL92) v3.5.1	carmeB0584
Carg13214	Melon (DHL92) v3.6.1	carmedB0591
Carg13214	Watermelon (Charleston Gray)	carwcgB0569
Carg13214	Watermelon (97103) v1	carwmB0580
Carg13214	Watermelon (97103) v2	carwmbB0609
Carg13214	Watermelon (97103) v2	carwmbB0612