Carg12896-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTTGGCCTCCCAGAAACTTGGCTTCTTCCTCTGCAGCCTTGCCCATGTCTTGCTGCTATTGGCAGGCTTAGTGCATTGTGATGGTTATCTCTCTCTCCTCTAGTTCCACAGCACTATACACACACAAACACAAGAGTTTCGAACCTCCTAATCGGGTTCGGTTAGAAATCACGACGCTCCATAATAGTTTGATATTGTCTATTTTGAACATAAATTTTTATGGTTTTGCTTCTAGTTTCGCCGACCAAAAAGCCTAGTATAAATGGAGATAATAGCCTCACTTTGGTCGGCTAATATGGGACTACTTCCCTTAATAATTCTCTCCATCGTGATGGGTCTGTTTGGCTGTCTGTAAACACACAAACAGTTCCATAGTTCCCATATCATTTTCTCAATGCTGCCTCACAAAAGCTTACACCCAATTATATCTATCATTTTGCAGTGAAGGAAGCGCTTTTCAAAGCCATGAACGGGTACAGAGAGTCAAGTAAACTTCCCTCCATGAAGAGGAACCCCAAAGCAGACTGCCTCGTCTCGCAAATGGCTTGGGAATTCGATGACCAGTCGACCATCATCAGCAAGTTCATCAGCGGCTCCACCATCTCTCCAAGCAACCTCACCCAACTACCCAGTCTCCCCGACTACCTATTGCAGTGTAAGATCGAGCTCAACAACACGAAAACGGGTCTGATCTTGCCCCTCTACATCCCCAGCTTGGTGTTGAATCTTGTTCTCGATGGATGTACAGGTTCCCAAATGACCAAGTACTTGAGCAAACCTGAATTCACGTCGGTGGGAATTGGGTATTATCAACAATGGGCAGTGATCGCTTTGGGCACCGATTCGCCCCTCGGAAGCTTTAATTCTGCCGTGAATTTGTCTGATCTGGGCCTTAGATATTTTTACTTCGTGTCGTCCTTGTTGGTAGGGTTGTTTCTTCTCTCTGGTTGAGACCGTTGTGTGCTGGTTTCCATCTGAAACGACATGTCGGCATGGTTAGGAAAATTTGAAGGCGTGGTTGCACAATAATTGACTTCTTTTATTTTTATTAATTATGAAAATGTCCATGATTATCACTTTTTATTTTTTTATTTATTTTTGGATAAGAAAAGCATGCTTAATGGATGCGTTTATGTTTGGCTAGAATTTAGAAAGATTTTAATTGTTTTTTAAGAGTTACAGTAATATTTATATTAAAAAATTGAAATAAAAGACACTAGGTTAAATGTGTTCTTGGAATCTAATTACCAAAAATTAAATAGTTTTAAGAGTTTTTCAACTTTCTTTTTAATAAAATATAAAACAATTCAAAAAAGTCATGAAACATAGTTAATTAAATAAGAATAGTACTAAGTAAAGTTGATATATATAGAAATATAAATGTAGTTTACTGATTAATTAATACACCTATTTTAATTTCTTTTCGAGTAGGAAATTCAAACTTCATTTTCAATTTTATTGTATTTAAAGAAAAGAATCTTCAATTTTGATATCTAACTACTCATCTTCAAATAAATATCTAACCACTCATCTTCTACTAACATATTAGGTATATAAAAAAGTTCCAACATAATTTTTAATGGGTCTTAGATTACAAAATGGGCATCTTTTTATTCTTAAATTTTGAGTTTAGCTTTTAAATCTTAAATTTTTTATATTTTATATTTTACACCTCTCCTCTTAAATAACTGTGACTTTGGGTTAGTTTTTTGTTTTTGGTATTTGGTGTTAATATTTAATAAATTAAATTATTGAAAAGCTAACTCAAATGATTAAAATTGGACATTAGTGAATACTCAAGATAAATGAATAAGATATTAATGTGTATTGACCAAAAAGAAACTAAATTCAACATCGCTACATTTTGAAAGTGAAGTGCAAGTAAAATTTGAAGATCAAACAGAAATAATACTCAAAATCTAAAGCTTAAAAGCTTAAAGATCAAACGTAAATCGTGTAATATTTTGAAATCTAACATCAAACAGAGACAACACTAAAAATCTAAGAATATATCAGAAAACAATACTCAAAATCTAAAGATAAATACTTTGATCCTATTTGACATTGTTAAGGATTGGATAAGTGTTAAATACAAAAGCAAAAGAGAGGGGAAGGAGGTTCGAAAATTGGGATGGAAATGCATGGGAAGAGGGGCAGGTGGAAGAGGTTGGAAGAAGAAACGTGTCTTTTTAGGCTGTCAAAATTGCTCTTCCAAAAGGGCACCTGGAATGGCCACAACAAAACACCAACCCTATCTACACTCTGTTTTCTTTTATAAATAATAATAATTCCCCACACCCTCCAACTCTTCATTCATCCACTTCAACATAATGTCTTCTCCTTCTTACTTTTCTATCTTTGGCGTTTTCGCCATTGCCTTCCTCTTCTTCTCCTCTCCTGTTCTCTCCAAAGGTACTCTCTCTGTCTCTCTGTCTCTCTCCCCCTGCTTCTTCTTTTCCAGTTGTTTCTGTGCTTTGCATGTATATTTGAAACTACATACCTCTACCGTGAAATCTAATTCAAAGAACAGGGGACCAAAATTGGTACTTTTACCTAAATTTTTTTCCCTCGAAATCTTTGGGTTGTTCTTTACCCCACCCATATACATGTTTGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGGGAGGGAAAGGACAAATCCGAGGGTAGAATCTCAAAATGGATGAGTATTATCTCAAAGTCTATGGATGAGTATGATCTCAAAATCAATGGGTAGAATCTCTCACTTCTTTAATTCTTTTTGACTTAAAAACAACCCCCACTTGAGCTATTTGGTTGTTTTTATCCCCCATGTACATATTTGGTTCCTTTTTTTTTTTTTTTTTTTTCGATTGAAGATAAGAGGACAGTTCAAATTTGAAGTGGCTATGTGGTATCAATTATCCTTCCAACATCGATATCGATAGTTGAATCCCAACTCCTAAGCTAGCGTTCTAGGAGAATCAGCCTCTGATTCAACACCTAAGCTAGCGTTCTAGGTGAATCAGCCTCTGATTCAACACCTAAGCTAGCGTTCTAGGAGAATCAGCTTCATTTGAGAGAAAAATTGAAGGCAGATATGACTAAAATATGTCTACTAAGAACTAAATTGAAAAGAAAAAAGAAACAAAATCTTAATGTAGGAAGATTTATTAGAATATTACACAACACCAGGAGGTGGATTTGAACCTCTAAAAAAAACACCATACCTAGGAGATGGATTTGAACTAGAAAGATTTCTTAGTTTAGGAAGATCTCTTAGAATATTACAACATACCTAGGAGGTGGATTTGATCTTGTAAAAAAAGACAAGAATAGGATTTTTGTGGCATATTATCGAATAGCTTTGTGTAACCCAAATTTCTAAGCAGGACAGTTTAATTAACAGATTGTTGTAAATTTGTATAAACATTGTAGAAACGTGCCTAGATAATTGTTTCCTTTTTTAATTTTAAATCATATCTGATTTAAAGAAACTGTTTTCTTAAAATCTGATCATGACTAGAGTTGAATTATGCATATAATTAGCATTTTATTCCAAGGAATTCCCATACTTCCTATGCCTTACCTTGTTCTTTTGCACTTTCTTTTTTTATTTATTTTTCATTTTTGTTAATTCTTACCTCGAGAAAATTTATCATCACCAATTTTTAAGAGATTGAACTAATTAGACAAATAAGAAATCGAAGGCACCTTATTAGTTGTGTAAAAAAGAAAAATACCAATCACCTGATTGCAGATGAAGAAGACAACCTTCTCCAAGGCCTAAACAGCTACCGACAAGCACAGAACCTCCCACCGCTCGCAAAGAACGCAAAAGCCGATTGTATTGCTGAGGAGATCGCGGATGACAACAAAGACCAACCCTGCGCTGTCACCACCGCCAAATCAAACGTGGTGCCAAGCCGCCCGTCGCAGATCACGAAGTTTATGGATTACGCCGAGAAATGCAAGGTGGACATCAACACCACCACGGACGCCATCGTGATGCCAGTATGCGTGCCAAAGCTGGTCCAGACTCTGCTTCTCGCGAATTACACGCACTCGCAGTACGCTAAGTATTTGAACGATTCGAGGTTCGTCGGCGCCGGTGTCGGCTCGGAGGACGACTGGATGGTGGTGGTTCTGACGACCGGAGCATCCGGCGGGAGCTTTGAAGGATCGGGAACGGAGTCGTTGATGGCTTCGGTTTGGGGATGCGTGGCATTGGCTCTGTTAGGGCTTATGATCGGGAATTTTGTGAGATTGTAG ATGGCCTTGGCCTCCCAGAAACTTGGCTTCTTCCTCTGCAGCCTTGCCCATGTCTTGCTGCTATTGGCAGGCTTAGTGCATTGTGATGTGAAGGAAGCGCTTTTCAAAGCCATGAACGGGTACAGAGAGTCAAGTAAACTTCCCTCCATGAAGAGGAACCCCAAAGCAGACTGCCTCGTCTCGCAAATGGCTTGGGAATTCGATGACCAGTCGACCATCATCAGCAAGTTCATCAGCGGCTCCACCATCTCTCCAAGCAACCTCACCCAACTACCCAGTCTCCCCGACTACCTATTGCAGTGTAAGATCGAGCTCAACAACACGAAAACGGGTCTGATCTTGCCCCTCTACATCCCCAGCTTGGTGTTGAATCTTGTTCTCGATGGATGTACAGGTTCCCAAATGACCAAGTACTTGAGCAAACCTGAATTCACGTCGGTGGGAATTGGGTATTATCAACAATGGGCAGTGATCGCTTTGGGCACCGATTCGCCCCTCGGAAGCTTTAATTCTGCCGTGAATTTGTCTGATCTGGGCCTTAGATATTTTTACTTCGTGTCGTCCTTGTTGAAAAATACCAATCACCTGATTGCAGATGAAGAAGACAACCTTCTCCAAGGCCTAAACAGCTACCGACAAGCACAGAACCTCCCACCGCTCGCAAAGAACGCAAAAGCCGATTGTATTGCTGAGGAGATCGCGGATGACAACAAAGACCAACCCTGCGCTGTCACCACCGCCAAATCAAACGTGGTGCCAAGCCGCCCGTCGCAGATCACGAAGTTTATGGATTACGCCGAGAAATGCAAGGTGGACATCAACACCACCACGGACGCCATCGTGATGCCAGTATGCGTGCCAAAGCTGGTCCAGACTCTGCTTCTCGCGAATTACACGCACTCGCAGTACGCTAAGTATTTGAACGATTCGAGGTTCGTCGGCGCCGGTGTCGGCTCGGAGGACGACTGGATGGTGGTGGTTCTGACGACCGGAGCATCCGGCGGGAGCTTTGAAGGATCGGGAACGGAGTCGTTGATGGCTTCGGTTTGGGGATGCGTGGCATTGGCTCTGTTAGGGCTTATGATCGGGAATTTTGTGAGATTGTAG ATGGCCTTGGCCTCCCAGAAACTTGGCTTCTTCCTCTGCAGCCTTGCCCATGTCTTGCTGCTATTGGCAGGCTTAGTGCATTGTGATGTGAAGGAAGCGCTTTTCAAAGCCATGAACGGGTACAGAGAGTCAAGTAAACTTCCCTCCATGAAGAGGAACCCCAAAGCAGACTGCCTCGTCTCGCAAATGGCTTGGGAATTCGATGACCAGTCGACCATCATCAGCAAGTTCATCAGCGGCTCCACCATCTCTCCAAGCAACCTCACCCAACTACCCAGTCTCCCCGACTACCTATTGCAGTGTAAGATCGAGCTCAACAACACGAAAACGGGTCTGATCTTGCCCCTCTACATCCCCAGCTTGGTGTTGAATCTTGTTCTCGATGGATGTACAGGTTCCCAAATGACCAAGTACTTGAGCAAACCTGAATTCACGTCGGTGGGAATTGGGTATTATCAACAATGGGCAGTGATCGCTTTGGGCACCGATTCGCCCCTCGGAAGCTTTAATTCTGCCGTGAATTTGTCTGATCTGGGCCTTAGATATTTTTACTTCGTGTCGTCCTTGTTGAAAAATACCAATCACCTGATTGCAGATGAAGAAGACAACCTTCTCCAAGGCCTAAACAGCTACCGACAAGCACAGAACCTCCCACCGCTCGCAAAGAACGCAAAAGCCGATTGTATTGCTGAGGAGATCGCGGATGACAACAAAGACCAACCCTGCGCTGTCACCACCGCCAAATCAAACGTGGTGCCAAGCCGCCCGTCGCAGATCACGAAGTTTATGGATTACGCCGAGAAATGCAAGGTGGACATCAACACCACCACGGACGCCATCGTGATGCCAGTATGCGTGCCAAAGCTGGTCCAGACTCTGCTTCTCGCGAATTACACGCACTCGCAGTACGCTAAGTATTTGAACGATTCGAGGTTCGTCGGCGCCGGTGTCGGCTCGGAGGACGACTGGATGGTGGTGGTTCTGACGACCGGAGCATCCGGCGGGAGCTTTGAAGGATCGGGAACGGAGTCGTTGATGGCTTCGGTTTGGGGATGCGTGGCATTGGCTCTGTTAGGGCTTATGATCGGGAATTTTGTGAGATTGTAG MALASQKLGFFLCSLAHVLLLLAGLVHCDVKEALFKAMNGYRESSKLPSMKRNPKADCLVSQMAWEFDDQSTIISKFISGSTISPSNLTQLPSLPDYLLQCKIELNNTKTGLILPLYIPSLVLNLVLDGCTGSQMTKYLSKPEFTSVGIGYYQQWAVIALGTDSPLGSFNSAVNLSDLGLRYFYFVSSLLKNTNHLIADEEDNLLQGLNSYRQAQNLPPLAKNAKADCIAEEIADDNKDQPCAVTTAKSNVVPSRPSQITKFMDYAEKCKVDINTTTDAIVMPVCVPKLVQTLLLANYTHSQYAKYLNDSRFVGAGVGSEDDWMVVVLTTGASGGSFEGSGTESLMASVWGCVALALLGLMIGNFVRL
BLAST of Carg12896-RA vs. NCBI nr
Match: XP_022946761.1 (uncharacterized GPI-anchored protein At3g06035 [Cucurbita moschata] >XP_023545378.1 uncharacterized GPI-anchored protein At3g06035 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 337.4 bits (864), Expect = 6.0e-89 Identity = 172/185 (92.97%), Postives = 177/185 (95.68%), Query Frame = 0
BLAST of Carg12896-RA vs. NCBI nr
Match: XP_022999135.1 (uncharacterized GPI-anchored protein At3g06035-like [Cucurbita maxima]) HSP 1 Score: 328.9 bits (842), Expect = 2.1e-86 Identity = 169/195 (86.67%), Postives = 179/195 (91.79%), Query Frame = 0
BLAST of Carg12896-RA vs. NCBI nr
Match: XP_011648805.1 (PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus]) HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71 Identity = 143/198 (72.22%), Postives = 161/198 (81.31%), Query Frame = 0
BLAST of Carg12896-RA vs. NCBI nr
Match: KGN60896.1 (hypothetical protein Csa_2G021670 [Cucumis sativus]) HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70 Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of Carg12896-RA vs. NCBI nr
Match: XP_008454814.1 (PREDICTED: uncharacterized GPI-anchored protein At3g06035 [Cucumis melo] >ABR67421.1 GPI-anchored protein-like protein II [Cucumis melo subsp. melo]) HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70 Identity = 140/183 (76.50%), Postives = 151/183 (82.51%), Query Frame = 0
BLAST of Carg12896-RA vs. TAIR10
Match: AT1G54860.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 180.6 bits (457), Expect = 1.7e-45 Identity = 92/167 (55.09%), Postives = 112/167 (67.07%), Query Frame = 0
BLAST of Carg12896-RA vs. TAIR10
Match: AT3G06035.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 139.0 bits (349), Expect = 5.7e-33 Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 0
BLAST of Carg12896-RA vs. TAIR10
Match: AT5G19250.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 134.4 bits (337), Expect = 1.4e-31 Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of Carg12896-RA vs. TAIR10
Match: AT5G19240.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 104.0 bits (258), Expect = 2.0e-22 Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = 0
BLAST of Carg12896-RA vs. TAIR10
Match: AT5G19230.1 (Glycoprotein membrane precursor GPI-anchored) HSP 1 Score: 89.7 bits (221), Expect = 4.0e-18 Identity = 61/169 (36.09%), Postives = 85/169 (50.30%), Query Frame = 0
BLAST of Carg12896-RA vs. Swiss-Prot
Match: sp|Q84MC0|UGPI4_ARATH (Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana OX=3702 GN=At3g06035 PE=2 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 1.0e-31 Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 0
BLAST of Carg12896-RA vs. Swiss-Prot
Match: sp|P59833|UGPI3_ARATH (Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana OX=3702 GN=At5g19250 PE=2 SV=1) HSP 1 Score: 134.4 bits (337), Expect = 2.5e-30 Identity = 74/170 (43.53%), Postives = 105/170 (61.76%), Query Frame = 0
BLAST of Carg12896-RA vs. Swiss-Prot
Match: sp|Q84VZ5|UGPI2_ARATH (Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana OX=3702 GN=At5g19240 PE=2 SV=2) HSP 1 Score: 104.0 bits (258), Expect = 3.7e-21 Identity = 64/166 (38.55%), Postives = 95/166 (57.23%), Query Frame = 0
BLAST of Carg12896-RA vs. Swiss-Prot
Match: sp|Q8GUL8|UGPI1_ARATH (Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis thaliana OX=3702 GN=At5g19230 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 7.1e-17 Identity = 61/169 (36.09%), Postives = 85/169 (50.30%), Query Frame = 0
BLAST of Carg12896-RA vs. TrEMBL
Match: tr|A0A0A0LLP1|A0A0A0LLP1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021670 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 8.3e-71 Identity = 136/174 (78.16%), Postives = 150/174 (86.21%), Query Frame = 0
BLAST of Carg12896-RA vs. TrEMBL
Match: tr|A0A1S3C074|A0A1S3C074_CUCME (uncharacterized GPI-anchored protein At3g06035 OS=Cucumis melo OX=3656 GN=LOC103495124 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70 Identity = 140/183 (76.50%), Postives = 151/183 (82.51%), Query Frame = 0
BLAST of Carg12896-RA vs. TrEMBL
Match: tr|A6YTC7|A6YTC7_CUCME (GPI-anchored protein-like protein II OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 275.4 bits (703), Expect = 1.9e-70 Identity = 140/183 (76.50%), Postives = 151/183 (82.51%), Query Frame = 0
BLAST of Carg12896-RA vs. TrEMBL
Match: tr|A6YTC6|A6YTC6_CUCME (GPI-anchored protein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 6.2e-66 Identity = 135/191 (70.68%), Postives = 149/191 (78.01%), Query Frame = 0
BLAST of Carg12896-RA vs. TrEMBL
Match: tr|A0A2P5B577|A0A2P5B577_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_332420 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 8.4e-63 Identity = 143/362 (39.50%), Postives = 209/362 (57.73%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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