Carg12895-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGTTAAAGCCAGAGCTCCTGGGAAAATCATACTCGCCGGTGAACACGCGGTCGTCCATGGTTCCACCGCCGTCGCTGCTTCCGTCAACCTCTACACTACAGCTTCAGTTCGATTGCCATGTTCTTCAGGTGCTCATTCTATCTCTCTCACTCTCATTTGAGGTTGACTTTTATTTGGGTGTTTGAAACTGAAGCGTATGATATGGAAGGTGAATTTGAAGAGTATTAGTTTCCTTCATGTGCCTGTTCTAATTGCTTGATTCCCATTTGAATTTTGATGATATTTCTATGTCATTTTTATGGGTTGTTATTAACGCTTCCTTTTGTAGATATTACATCTCGGTTAGGTATCATATTTGACCCTCTGGTATGATATTTAATCTTCCATTAAGGTTTGCTATAGGTATCGTATTCGATCCTTGTATGATATTCAATTTTCTATTACAATTTATCATAGGTATCATATTTGACATTTGTATGATATTTAGTCTTCGATTACGATTTACCATAGGTATCATATTTAACCTTGTATGATATTTAGTCTTCCATTTCGGTTTACCATAGACGTCATATTTCACCTTGTATGATATTTAGCCTTCCATTACGGTTTACCATATGTATCATATTTGATCCCTGTTTGATATTTAGTCTTCCATTACAGTTTACCATAGGTATCGTATTTGACCCTTGTATGATATTTATCCTTCCATACCATAGGTATCGTAAAAGACAAATATTTTGTATCCATTTATTGTTGTTTTCATTTCCTTGGTAACTTTCACCACCGTTTAAGTACGGTGATTTTAGCAAATATTCTCACCCTCGAGTCTTTACCCACACTTTTCCTCATCAAATTACATTTCTTATCAGACAAGGATGATATTGTGAAACTCCAACTGAAGGACCTAGCACTTGAGTTTGCATGGCCAGTTAGTAGAATCAAGGAGGCTTTGGGTGGATTCGTTGGTCCCATCTCGACACCCACATCATGCCCTGCTGAGTGCTTGAAAGCAATTGCATCTCTTGTTGAGTATCAAAACATTCCGGAGGCTAAAATTAAGCTTGCCTCTGGAGTGTCAGCATTCCTTTGGCTCTATTCTTCCATTCTAAGGTTTGTATTTCATTCATGAAAGGTTTGAAAGATTTTAACTTGTTCATCCTCCATTTCACTTATTATGCTCTCTTGTCTTTCAGATTTGTGCCTGTTGATGTAGCCATCACGTCTGAGCTTCCTCTTGGATCAGGCTTGGGCTCATCTGCTGCATTTTGTGTTGCCATTTCAGCTGCTCTGCTTGCTTTATCAGGCTCTGTGAATGTCGATCAGGAGCAGTGTGGATGGATGGTATGTAAAGAAGATGAGCTAGTTTTGTTGAACAAGTGGGCCTTTGAGGGTGAAAAGATAATCCATGGAAAACCTTCTGGAATTGACAATACTGTGAGCACATATGGTATGCAAAATCCATTTTCTTCTTATCGTAATCCTCTCACTTTGAGATCCCACGTCGGTTGCAGAGGGAAACGAAGTATTCCTTGTAAGCGTGTGGAAATCTCTCTCTAGTAGATGCGTTTTAAAACCGTGAAGTTGACGGCGATGCGTAACGGGTCAAAGCAGACAATATCTGCTAGCGGTGGGCTTGGGCCGTTACAAATGACATTAAAGTCAAACACCGAGCGGTGTGCTAGCGAGGACGCTGGACCCTCAAGGGGGGTGGGGATTGTAAGATCTCATATCGGTTGGAGAGGCGAACGAAGCATTCCTTAGAAGGGTGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAACCGTGAGGCTGACGGCGATATGTAACGGGTCAAAGTAAATAATATCTGCTAGTGGTAAGCTTGGACTATTACAAATGGTATCAGAGCTAGACATAGGGCGATGTGCCAGAGAGGACGCTGGACCCACGAGGGGGGTGAATTGTGAGATCTCATATCGATTGGAAGGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAATGGACGCATTTTAAAATCGTGAGGCTGATGACGAAACGTAACGGGTCAAAGCGGACAATATTTGCCAACGGTGGGCTTGGGCTGTTACAAATGGTATTAGAGTTAGAAACTAGACGGTGTGCCAGCGAGAACGCTGGAACCTCAAGAGAGGTGGATTGTGGGATCCCAATCGGTTGGAGAGGGGAACAAACCATTTATAAGGGTGTGAAAACCTCTTCCTAGCAAATGCGTTTTAAGTCAAATCAGACAATATCTGCTAGTAGTGGGCTTGGACTATTACAAATGATATGAGAGCTAGATACCAGGTGGTGTGCCAGCGAGGATGTTGGACCGCTAAAGGAAGTGGATTGTGAGATCCCACATCGGTTGGAGAGTGGAATGAAGCATTCCTTATAAAGGTGTGGAAACCTCTCTCTAGTAGACGCGTTTTAAACCGGTAAGGCTGACGGCGATACGTAACGGGTCAAAGCGGACAATATCTATTAGCGGTGGGATTGGGGCTATTACATTAACATAAATTTGAACTCAATTTCAAACCTCAATTCGTATCGATGTTCTTGTGTATCTAATACAAGAAAATCCCATGTATCAGGCAGCATGATCAAGTTCAGGTCAGGCAGTTTGGATCTCATTAAATCCAATATGCCATTGAAAATGCTTGTTACAAACACAAAGGTTGGAAGAAACACAAAGGCTTTAGTGGCTGGTGTTTCAGAAAGGGCCATCAGACATCCTGATGCAATGAGCTCTGTGTTCAATGCTGTCGATTCTATCAGCAAGGAGTTATCAATCCTTCTTCAGTCATTAGCTCATGACGACATGTCCCTAACTGAGAAGGAAGAACAGTTAGCAGAGTTGATGGAAATGAATCAAGGCTTACTTCAGTGTATGGGGGTAAGCCATGGTTCTATCGAAACCATCCTCCGGACGACGTCGAAATACGAGCTAGTTTCCAAATTGACAGGAGCTGGAGGTGGAGGCTGTGTTCTTACGCTGTTGCCTAACTGTATCCTTTTCCTGTCATGGAATCTTATGCCTTTGACTCTTCATATGCTCTTACTTCTATCGTTCATTGGTTCGTGGTTAATCCATATTTTCCCTTCCTATCTAACGATTGCCATGATACCCTTATGATCAATTAATGGGACAAAGTCGGAAAATGTTCTTGTAAGATCCTACATCGGTTGGGGTTCGTTGAGCCTTAAAGGGGAGTGGATTGTGAGATCTCATATCGATTGGAGAGTAGAATGAAGCATTCTTTATAAGGGTGTTGAAACCTCTCCCTAGAAGACACATTTTGAAACCTTGAGAGAAACCCCAAAAGAAAAAATTCAAAAAAGACAATATCTATTAACGGTGGGCTTGGGTTGATACAGTTATTGCTCTATTATTAGCTCAGATAGCCATCGTTTCTGGCGTTTATGTCTCCTTTTAATGACTCCCTTAAGAATTTACCTAGTCGAGTAATAATGGGAATGGGAAGGGAGAAGTTTCTAAATATTATCAGTTTTCTAACTGATACGTTTTCTTTAGATGCAATGACAGCATATTCTTTTATGCATTTTCTTAACTATGTGGAACAGTGCTTTCAGGGACCATTGTTGATGAAGTAATTGCAGAGCTTGAGTCATGTGGATTTGAATGCTTCATTGCTGGGATTGGAGGAAAAGGGGCCGAGATCTCGTTCCATGATTTAGCCTGAAAAATTTTCAAGCGATTCTTTGAACGAAACGAACTCTTTTCCTTTTGTTTCTTTCCTTTCACGAAGTCTAATAAGCTCTCATTACTTCAGACATGTCACTTGAAAAAGATTCCTTAAAATTATGGTTCACTTTCAGTAGACGTATTGAGTTGGTCTCGCTTTGATATTCACACACCTTAACAGTATATTTATCATTTGCGAGAGATAGCCGACGTGCAAAATAGAGAAAAGCAGTGCACATCAGTATGGTACTTACCCCTCTGGCTCAGGTTAAATATAACAAGTTTACTTGACCTCAGTGGGTTATAATAGTGTATTTATAGGAGAATTGACAGAAAGTTAACTTTGAGCTCTCATAGACCCTAATGAATTTAGTCTTTTAGTAAATGATCAACTCGATGATTAGCCCGTCTTCGCTCGATTTCGTCAAGCACAATTTTACTCAAAGAAGATGAAATA ATGGAAGTTAAAGCCAGAGCTCCTGGGAAAATCATACTCGCCGGTGAACACGCGGTCGTCCATGGTTCCACCGCCGTCGCTGCTTCCGTCAACCTCTACACTACAGCTTCAGTTCGATTGCCATGTTCTTCAGTTAGTAGAATCAAGGAGGCTTTGGGTGGATTCGTTGGTCCCATCTCGACACCCACATCATGCCCTGCTGAGTGCTTGAAAGCAATTGCATCTCTTGTTGAGTATCAAAACATTCCGGAGGCTAAAATTAAGCTTGCCTCTGGAGTGTCAGCATTCCTTTGGCTCTATTCTTCCATTCTAAGATTTGTGCCTGTTGATGTAGCCATCACGTCTGAGCTTCCTCTTGGATCAGGCTTGGGCTCATCTGCTGCATTTTGTGTTGCCATTTCAGCTGCTCTGCTTGCTTTATCAGGCTCTGTGAATGTCGATCAGGAGCAGTGTGGATGGATGGTATGTAAAGAAGATGAGCTAGTTTTGTTGAACAAGTGGGCCTTTGAGGGCAGTTTGGATCTCATTAAATCCAATATGCCATTGAAAATGCTTGTTACAAACACAAAGGTTGGAAGAAACACAAAGGCTTTAGTGGCTGGTGTTTCAGAAAGGGCCATCAGACATCCTGATGCAATGAGCTCTGTGTTCAATGCTGTCGATTCTATCAGCAAGGAGTTATCAATCCTTCTTCAGTCATTAGCTCATGACGACATGTCCCTAACTGAGAAGGAAGAACAGTTAGCAGAGTTGATGGAAATGAATCAAGGCTTACTTCAGTGTATGGGGGTAAGCCATGGTTCTATCGAAACCATCCTCCGGACGACGTCGAAATACGAGCTAGTTTCCAAATTGACAGGAGCTGGAGGTGGAGGCTGTGTTCTTACGCTGTTGCCTAACTTGCTTTCAGGGACCATTGTTGATGAAGTAATTGCAGAGCTTGAGTCATGTGGATTTGAATGCTTCATTGCTGGGATTGGAGGAAAAGGGGCCGAGATCTCGTTCCATGATTTAGCCTGAAAAATTTTCAAGCGATTCTTTGAACGAAACGAACTCTTTTCCTTTTGTTTCTTTCCTTTCACGAAGTCTAATAAGCTCTCATTACTTCAGACATGTCACTTGAAAAAGATTCCTTAAAATTATGGTTCACTTTCAGTAGACGTATTGAGTTGGTCTCGCTTTGATATTCACACACCTTAACAGTATATTTATCATTTGCGAGAGATAGCCGACGTGCAAAATAGAGAAAAGCAGTGCACATCAGTATGGTACTTACCCCTCTGGCTCAGGTTAAATATAACAAGTTTACTTGACCTCAGTGGGTTATAATAGTGTATTTATAGGAGAATTGACAGAAAGTTAACTTTGAGCTCTCATAGACCCTAATGAATTTAGTCTTTTAGTAAATGATCAACTCGATGATTAGCCCGTCTTCGCTCGATTTCGTCAAGCACAATTTTACTCAAAGAAGATGAAATA ATGGAAGTTAAAGCCAGAGCTCCTGGGAAAATCATACTCGCCGGTGAACACGCGGTCGTCCATGGTTCCACCGCCGTCGCTGCTTCCGTCAACCTCTACACTACAGCTTCAGTTCGATTGCCATGTTCTTCAGTTAGTAGAATCAAGGAGGCTTTGGGTGGATTCGTTGGTCCCATCTCGACACCCACATCATGCCCTGCTGAGTGCTTGAAAGCAATTGCATCTCTTGTTGAGTATCAAAACATTCCGGAGGCTAAAATTAAGCTTGCCTCTGGAGTGTCAGCATTCCTTTGGCTCTATTCTTCCATTCTAAGATTTGTGCCTGTTGATGTAGCCATCACGTCTGAGCTTCCTCTTGGATCAGGCTTGGGCTCATCTGCTGCATTTTGTGTTGCCATTTCAGCTGCTCTGCTTGCTTTATCAGGCTCTGTGAATGTCGATCAGGAGCAGTGTGGATGGATGGTATGTAAAGAAGATGAGCTAGTTTTGTTGAACAAGTGGGCCTTTGAGGGCAGTTTGGATCTCATTAAATCCAATATGCCATTGAAAATGCTTGTTACAAACACAAAGGTTGGAAGAAACACAAAGGCTTTAGTGGCTGGTGTTTCAGAAAGGGCCATCAGACATCCTGATGCAATGAGCTCTGTGTTCAATGCTGTCGATTCTATCAGCAAGGAGTTATCAATCCTTCTTCAGTCATTAGCTCATGACGACATGTCCCTAACTGAGAAGGAAGAACAGTTAGCAGAGTTGATGGAAATGAATCAAGGCTTACTTCAGTGTATGGGGGTAAGCCATGGTTCTATCGAAACCATCCTCCGGACGACGTCGAAATACGAGCTAGTTTCCAAATTGACAGGAGCTGGAGGTGGAGGCTGTGTTCTTACGCTGTTGCCTAACTTGCTTTCAGGGACCATTGTTGATGAAGTAATTGCAGAGCTTGAGTCATGTGGATTTGAATGCTTCATTGCTGGGATTGGAGGAAAAGGGGCCGAGATCTCGTTCCATGATTTAGCCTGA MEVKARAPGKIILAGEHAVVHGSTAVAASVNLYTTASVRLPCSSVSRIKEALGGFVGPISTPTSCPAECLKAIASLVEYQNIPEAKIKLASGVSAFLWLYSSILRFVPVDVAITSELPLGSGLGSSAAFCVAISAALLALSGSVNVDQEQCGWMVCKEDELVLLNKWAFEGSLDLIKSNMPLKMLVTNTKVGRNTKALVAGVSERAIRHPDAMSSVFNAVDSISKELSILLQSLAHDDMSLTEKEEQLAELMEMNQGLLQCMGVSHGSIETILRTTSKYELVSKLTGAGGGGCVLTLLPNLLSGTIVDEVIAELESCGFECFIAGIGGKGAEISFHDLA
BLAST of Carg12895-RA vs. NCBI nr
Match: XP_023545825.1 (mevalonate kinase-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 614.8 bits (1584), Expect = 1.8e-172 Identity = 337/386 (87.31%), Postives = 337/386 (87.31%), Query Frame = 0
BLAST of Carg12895-RA vs. NCBI nr
Match: XP_022946758.1 (mevalonate kinase-like [Cucurbita moschata]) HSP 1 Score: 608.6 bits (1568), Expect = 1.3e-170 Identity = 330/385 (85.71%), Postives = 335/385 (87.01%), Query Frame = 0
BLAST of Carg12895-RA vs. NCBI nr
Match: XP_022999117.1 (mevalonate kinase-like [Cucurbita maxima]) HSP 1 Score: 595.9 bits (1535), Expect = 8.6e-167 Identity = 329/386 (85.23%), Postives = 331/386 (85.75%), Query Frame = 0
BLAST of Carg12895-RA vs. NCBI nr
Match: XP_023545824.1 (mevalonate kinase-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 537.3 bits (1383), Expect = 3.6e-149 Identity = 298/349 (85.39%), Postives = 299/349 (85.67%), Query Frame = 0
BLAST of Carg12895-RA vs. NCBI nr
Match: XP_004139185.1 (PREDICTED: mevalonate kinase [Cucumis sativus] >KGN60892.1 hypothetical protein Csa_2G021630 [Cucumis sativus]) HSP 1 Score: 532.7 bits (1371), Expect = 9.0e-148 Identity = 294/386 (76.17%), Postives = 315/386 (81.61%), Query Frame = 0
BLAST of Carg12895-RA vs. TAIR10
Match: AT5G27450.1 (mevalonate kinase) HSP 1 Score: 374.4 bits (960), Expect = 7.4e-104 Identity = 217/385 (56.36%), Postives = 265/385 (68.83%), Query Frame = 0
BLAST of Carg12895-RA vs. Swiss-Prot
Match: sp|P46086|KIME_ARATH (Mevalonate kinase OS=Arabidopsis thaliana OX=3702 GN=At5g27450 PE=2 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 1.3e-102 Identity = 217/385 (56.36%), Postives = 265/385 (68.83%), Query Frame = 0
BLAST of Carg12895-RA vs. Swiss-Prot
Match: sp|Q03426|KIME_HUMAN (Mevalonate kinase OS=Homo sapiens OX=9606 GN=MVK PE=1 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.5e-45 Identity = 141/378 (37.30%), Postives = 198/378 (52.38%), Query Frame = 0
BLAST of Carg12895-RA vs. Swiss-Prot
Match: sp|P17256|KIME_RAT (Mevalonate kinase OS=Rattus norvegicus OX=10116 GN=Mvk PE=1 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 4.1e-43 Identity = 135/380 (35.53%), Postives = 194/380 (51.05%), Query Frame = 0
BLAST of Carg12895-RA vs. Swiss-Prot
Match: sp|Q9R008|KIME_MOUSE (Mevalonate kinase OS=Mus musculus OX=10090 GN=Mvk PE=1 SV=1) HSP 1 Score: 175.3 bits (443), Expect = 1.2e-42 Identity = 137/385 (35.58%), Postives = 196/385 (50.91%), Query Frame = 0
BLAST of Carg12895-RA vs. Swiss-Prot
Match: sp|Q5E9T8|KIME_BOVIN (Mevalonate kinase OS=Bos taurus OX=9913 GN=MVK PE=2 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.2e-39 Identity = 132/380 (34.74%), Postives = 188/380 (49.47%), Query Frame = 0
BLAST of Carg12895-RA vs. TrEMBL
Match: tr|A0A0A0LJK4|A0A0A0LJK4_CUCSA (Mevalonate kinase OS=Cucumis sativus OX=3659 GN=Csa_2G021630 PE=3 SV=1) HSP 1 Score: 532.7 bits (1371), Expect = 5.9e-148 Identity = 294/386 (76.17%), Postives = 315/386 (81.61%), Query Frame = 0
BLAST of Carg12895-RA vs. TrEMBL
Match: tr|A0A1S3C084|A0A1S3C084_CUCME (Mevalonate kinase OS=Cucumis melo OX=3656 GN=LOC103495132 PE=3 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 1.3e-147 Identity = 293/386 (75.91%), Postives = 316/386 (81.87%), Query Frame = 0
BLAST of Carg12895-RA vs. TrEMBL
Match: tr|A0A1S3C0R0|A0A1S3C0R0_CUCME (Mevalonate kinase OS=Cucumis melo OX=3656 GN=LOC103495150 PE=3 SV=1) HSP 1 Score: 498.4 bits (1282), Expect = 1.2e-137 Identity = 279/386 (72.28%), Postives = 303/386 (78.50%), Query Frame = 0
BLAST of Carg12895-RA vs. TrEMBL
Match: tr|A0A2K2AB31|A0A2K2AB31_POPTR (Mevalonate kinase OS=Populus trichocarpa OX=3694 GN=POPTR_005G035300v3 PE=3 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 1.4e-125 Identity = 256/383 (66.84%), Postives = 287/383 (74.93%), Query Frame = 0
BLAST of Carg12895-RA vs. TrEMBL
Match: tr|A0A2P4MBP9|A0A2P4MBP9_QUESU (Mevalonate kinase OS=Quercus suber OX=58331 GN=CFP56_58350 PE=3 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 1.6e-124 Identity = 258/385 (67.01%), Postives = 287/385 (74.55%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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