Carg12399-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12399-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Copper transporter
Location	Cucurbita_argyrosperma_scaffold_074 : 760987 .. 761373 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

mRNA sequence

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Coding sequence (CDS)

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Protein sequence

MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIPPLNC

Homology

[Close]

BLAST of Carg12399-RA vs. NCBI nr
Match: XP_023525766.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399-RA vs. NCBI nr
Match: XP_022998910.1 (copper transporter 1-like [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 2.8e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVF+FLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFIFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399-RA vs. NCBI nr
Match: XP_022948639.1 (copper transporter 1-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGR+SLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRNSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399-RA vs. NCBI nr
Match: XP_009785614.1 (PREDICTED: copper transporter 6-like [Nicotiana sylvestris] >XP_016481424.1 PREDICTED: copper transporter 6-like [Nicotiana tabacum])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399-RA vs. NCBI nr
Match: KGN65764.1 (hypothetical protein Csa_1G526835 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  S  I L+FVFL+AF VEWLSHTK T S  D++ A
Sbjct: 1   METHMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           G VQT LYG+RVGLAF+VMLAVMS+N                VYGS++FNRSKID NLN+
Sbjct: 61  GLVQTILYGIRVGLAFIVMLAVMSYNXXXXXXXXXXXXXXXXVYGSKIFNRSKIDPNLNL 120

Query: 121 S--DIPPLNC 129
              D+PPLNC
Sbjct: 121 DSLDLPPLNC 130

[Close]

BLAST of Carg12399-RA vs. TAIR10
Match: AT5G59030.1 (copper transporter 1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 8   FWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV---FAGFVQ 67
           FWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D     AG +Q
Sbjct: 47  FWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQ 106

Query: 68  TALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIP 127
           TA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D   N   +P
Sbjct: 107 TAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNY--VP 166

Query: 128 PLNC 129
           P  C
Sbjct: 167 PSGC 168

[Close]

BLAST of Carg12399-RA vs. TAIR10
Match: AT3G46900.1 (copper transporter 2)

HSP 1 Score: 120.6 bits (301), Expect = 7.3e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVFAGF 63
           HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  AG 
Sbjct: 31  HMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGL 90

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
            QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 91  AQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399-RA vs. TAIR10
Match: AT2G26975.1 (Ctr copper transporter family)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399-RA vs. TAIR10
Match: AT5G59040.1 (copper transporter 3)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399-RA vs. TAIR10
Match: AT2G37925.1 (copper transporter 4)

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

[Close]

BLAST of Carg12399-RA vs. Swiss-Prot
Match: sp|Q39065|COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 8   FWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV---FAGFVQ 67
           FWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D     AG +Q
Sbjct: 47  FWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQ 106

Query: 68  TALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIP 127
           TA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D   N   +P
Sbjct: 107 TAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNY--VP 166

Query: 128 PLNC 129
           P  C
Sbjct: 167 PSGC 168

[Close]

BLAST of Carg12399-RA vs. Swiss-Prot
Match: sp|Q9STG2|COPT2_ARATH (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVFAGF 63
           HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  AG 
Sbjct: 31  HMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGL 90

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
            QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 91  AQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399-RA vs. Swiss-Prot
Match: sp|Q8GWP3|COPT6_ARATH (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399-RA vs. Swiss-Prot
Match: sp|Q9FGU8|COPT3_ARATH (Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399-RA vs. Swiss-Prot
Match: sp|Q8SAA5|COPT4_ARATH (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

[Close]

BLAST of Carg12399-RA vs. TrEMBL
Match: tr|A0A1S4AXZ3|A0A1S4AXZ3_TOBAC (copper transporter 6-like OS=Nicotiana tabacum OX=4097 GN=LOC107802430 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-36
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399-RA vs. TrEMBL
Match: tr|A0A1U7XF90|A0A1U7XF90_NICSY (copper transporter 6-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233862 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-36
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399-RA vs. TrEMBL
Match: tr|A0A0A0LXH5|A0A0A0LXH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  S  I L+FVFL+AF VEWLSHTK T S  D++ A
Sbjct: 1   METHMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           G VQT LYG+RVGLAF+VMLAVMS+N                VYGS++FNRSKID NLN+
Sbjct: 61  GLVQTILYGIRVGLAFIVMLAVMSYNXXXXXXXXXXXXXXXXVYGSKIFNRSKIDPNLNL 120

Query: 121 S--DIPPLNC 129
              D+PPLNC
Sbjct: 121 DSLDLPPLNC 130

[Close]

BLAST of Carg12399-RA vs. TrEMBL
Match: tr|V4SMC6|V4SMC6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029961mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           H+TFFWG + EILF GWPG S   Y +AL+FVF+++  VEW+SH KL  S   +V +G +
Sbjct: 5   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 64

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF-NRSKIDLNLNMSD 123
           QT +Y  R+GLA++VMLAVMSFN+GVLLAAVAGYSVGFL++GS+VF N  KI+   ++SD
Sbjct: 65  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSD 124

Query: 124 IPPLNC 129
           +PPLNC
Sbjct: 125 LPPLNC 130

[Close]

BLAST of Carg12399-RA vs. TrEMBL
Match: tr|A0A067FKS2|A0A067FKS2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033054mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           H+TFFWG + EILF GWPG S   Y +AL+FVF+++  VEW+SH KL  S   +V +G +
Sbjct: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 62

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF-NRSKIDLNLNMSD 123
           QT +Y  R+GLA++VMLAVMSFN+GVLLAAVAGYSVGFL++GS+VF N  KI+   ++SD
Sbjct: 63  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSD 122

Query: 124 IPPLNC 129
           +PPLNC
Sbjct: 123 LPPLNC 128

The following BLAST results are available for this feature:

BLAST of Carg12399-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525766.1	2.2e-62	100.00	copper transporter 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998910.1	2.8e-62	99.22	copper transporter 1-like [Cucurbita maxima]	[more]
XP_022948639.1	4.9e-62	99.22	copper transporter 1-like [Cucurbita moschata]	[more]
XP_009785614.1	1.3e-35	58.91	PREDICTED: copper transporter 6-like [Nicotiana sylvestris] >XP_016481424.1 PRED...	[more]
KGN65764.1	1.7e-35	62.31	hypothetical protein Csa_1G526835 [Cucumis sativus]	[more]

BLAST of Carg12399-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59030.1	1.9e-28	50.00	copper transporter 1	[more]
AT3G46900.1	7.3e-28	52.21	copper transporter 2	[more]
AT2G26975.1	1.4e-26	52.21	Ctr copper transporter family	[more]
AT5G59040.1	2.1e-22	49.06	copper transporter 3	[more]
AT2G37925.1	8.6e-21	43.86	copper transporter 4	[more]

BLAST of Carg12399-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39065\|COPT1_ARATH	3.5e-27	50.00	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
sp\|Q9STG2\|COPT2_ARATH	1.3e-26	52.21	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
sp\|Q8GWP3\|COPT6_ARATH	2.5e-25	52.21	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
sp\|Q9FGU8\|COPT3_ARATH	3.7e-21	49.06	Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1	[more]
sp\|Q8SAA5\|COPT4_ARATH	1.6e-19	43.86	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]

BLAST of Carg12399-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4AXZ3\|A0A1S4AXZ3_TOBAC	8.8e-36	58.91	copper transporter 6-like OS=Nicotiana tabacum OX=4097 GN=LOC107802430 PE=4 SV=1	[more]
tr\|A0A1U7XF90\|A0A1U7XF90_NICSY	8.8e-36	58.91	copper transporter 6-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233862 PE=4 S...	[more]
tr\|A0A0A0LXH5\|A0A0A0LXH5_CUCSA	1.2e-35	62.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=4 SV=1	[more]
tr\|V4SMC6\|V4SMC6_9ROSI	5.7e-35	60.32	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029961mg PE=4 ...	[more]
tr\|A0A067FKS2\|A0A067FKS2_CITSI	5.7e-35	60.32	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033054mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005375	copper ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0035434	copper ion transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR007274	Cop_transporter

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12399	Carg12399	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12399-RA.exon.1	Carg12399-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12399-RA.CDS.1	Carg12399-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12399-RA	Carg12399-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 5..49 e-value: 8.6E-7 score: 29.6 coord: 58..103 e-value: 2.1E-8 score: 34.8
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 3..128
None	No IPR available	PANTHER	PTHR12483:SF47	COPPER TRANSPORTER 1-RELATED	coord: 3..128