Carg12399 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12399
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Copper transporter
Location	Cucurbita_argyrosperma_scaffold_074 : 760987 .. 761373 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

mRNA sequence

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Coding sequence (CDS)

ATGGAATTCCACATGACATTTTTCTGGGGAAAGTCGGCGGAGATTCTGTTCGCCGGCTGGCCTGGCCGGAGCTCACTCTCTTACGCCATCGCCTTAGTCTTCGTCTTTCTCGTAGCCTTCGCCGTGGAGTGGCTGTCGCACACTAAACTCACCGCCTCTGTCGCCGATGACGTCTTCGCCGGCTTTGTTCAGACCGCCCTGTACGGCGTCCGGGTGGGGTTGGCTTTTGTCGTCATGCTGGCCGTCATGTCATTCAATGTCGGAGTCCTGCTTGCGGCGGTGGCCGGGTATTCGGTCGGGTTCTTGGTTTATGGGAGCCGGGTTTTTAATAGATCCAAAATTGACCTAAATTTGAATATGTCTGATATACCACCGCTTAATTGTTAA

Protein sequence

MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIPPLNC

Homology

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: XP_023525766.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.7 bits (631), Expect = 2.2e-62
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: XP_022998910.1 (copper transporter 1-like [Cucurbita maxima])

HSP 1 Score: 247.3 bits (630), Expect = 2.8e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVF+FLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFIFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: XP_022948639.1 (copper transporter 1-like [Cucurbita moschata])

HSP 1 Score: 246.5 bits (628), Expect = 4.9e-62
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           MEFHMTFFWGKSAEILFAGWPGR+SLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA
Sbjct: 1   MEFHMTFFWGKSAEILFAGWPGRNSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM
Sbjct: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120

Query: 121 SDIPPLNC 129
           SDIPPLNC
Sbjct: 121 SDIPPLNC 128

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: XP_009785614.1 (PREDICTED: copper transporter 6-like [Nicotiana sylvestris] >XP_016481424.1 PREDICTED: copper transporter 6-like [Nicotiana tabacum])

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399 vs. NCBI nr
Match: KGN65764.1 (hypothetical protein Csa_1G526835 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  S  I L+FVFL+AF VEWLSHTK T S  D++ A
Sbjct: 1   METHMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           G VQT LYG+RVGLAF+VMLAVMS+N                VYGS++FNRSKID NLN+
Sbjct: 61  GLVQTILYGIRVGLAFIVMLAVMSYNXXXXXXXXXXXXXXXXVYGSKIFNRSKIDPNLNL 120

Query: 121 S--DIPPLNC 129
              D+PPLNC
Sbjct: 121 DSLDLPPLNC 130

[Close]

BLAST of Carg12399 vs. TAIR10
Match: AT5G59030.1 (copper transporter 1)

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 8   FWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV---FAGFVQ 67
           FWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D     AG +Q
Sbjct: 47  FWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQ 106

Query: 68  TALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIP 127
           TA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D   N   +P
Sbjct: 107 TAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNY--VP 166

Query: 128 PLNC 129
           P  C
Sbjct: 167 PSGC 168

[Close]

BLAST of Carg12399 vs. TAIR10
Match: AT3G46900.1 (copper transporter 2)

HSP 1 Score: 120.6 bits (301), Expect = 7.3e-28
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVFAGF 63
           HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  AG 
Sbjct: 31  HMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGL 90

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
            QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 91  AQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399 vs. TAIR10
Match: AT2G26975.1 (Ctr copper transporter family)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399 vs. TAIR10
Match: AT5G59040.1 (copper transporter 3)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-22
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399 vs. TAIR10
Match: AT2G37925.1 (copper transporter 4)

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-21
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

[Close]

BLAST of Carg12399 vs. Swiss-Prot
Match: sp|Q39065|COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.5e-27
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 8   FWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDV---FAGFVQ 67
           FWGK+ E+LF+GWPG SS  YA+ L+FVF +A   EWL+H+ L      D     AG +Q
Sbjct: 47  FWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQ 106

Query: 68  TALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNMSDIP 127
           TA+Y +R+GLA++VMLAVMSFN GV L A+AG++VGF+++GS+ F  +  D   N   +P
Sbjct: 107 TAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNY--VP 166

Query: 128 PLNC 129
           P  C
Sbjct: 167 PSGC 168

[Close]

BLAST of Carg12399 vs. Swiss-Prot
Match: sp|Q9STG2|COPT2_ARATH (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 59/113 (52.21%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTK-LTASVADDVFAGF 63
           HMTFFWGK+ E+LF+GWPG SS  YA+ L+ +FL+A   EWL+H+  L  S + +  AG 
Sbjct: 31  HMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGL 90

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
            QTA+Y ++ GL+++VMLAVMSFN GV + A+AGY VGF ++GS  F +   D
Sbjct: 91  AQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDD 143

[Close]

BLAST of Carg12399 vs. Swiss-Prot
Match: sp|Q8GWP3|COPT6_ARATH (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-25
Identity = 59/113 (52.21%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA-GF 63
           HMTFFWGK+ EILF+GWPG S   Y + L+ VFL+A  VEWL+H+ +         A G 
Sbjct: 26  HMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEWLAHSSILRGRGSTSRAKGL 85

Query: 64  VQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKID 116
           VQTA+Y ++ GLA++VMLAVMSFN GV + A+AG++VGF+++GS  F     D
Sbjct: 86  VQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFMLFGSTAFKNPSDD 138

[Close]

BLAST of Carg12399 vs. Swiss-Prot
Match: sp|Q9FGU8|COPT3_ARATH (Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           HMTFFWGK+ E+LF GWPG S   Y + L  +F+++   E LS      S    +  G +
Sbjct: 31  HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLL 90

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF 110
           QTA+Y VR  L+++VMLAVMSFN GV +AA+AG+ +GF+++GSR F
Sbjct: 91  QTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFGSRAF 136

[Close]

BLAST of Carg12399 vs. Swiss-Prot
Match: sp|Q8SAA5|COPT4_ARATH (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-19
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASV---ADDVFA 63
           H TF+WG + ++LF+GWPG     YA+AL+FVF +AF  EWL+     +S+   AD +  
Sbjct: 31  HPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAK 90

Query: 64  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKI 115
              +TA+Y V+ G +++V+LAV+SFN GV LAA+ G+++GF V+  R F    I
Sbjct: 91  VAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFRGRAFRNRDI 144

[Close]

BLAST of Carg12399 vs. TrEMBL
Match: tr|A0A1S4AXZ3|A0A1S4AXZ3_TOBAC (copper transporter 6-like OS=Nicotiana tabacum OX=4097 GN=LOC107802430 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-36
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399 vs. TrEMBL
Match: tr|A0A1U7XF90|A0A1U7XF90_NICSY (copper transporter 6-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233862 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.8e-36
Identity = 76/129 (58.91%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLS-YAIALVFVFLVAFAVEWLSHTKLTASVADDVF 60
           M  HMTFFWGK+AE+LF+GWPG +++  Y +AL FVFL+AF VEW+SHT      A+ V 
Sbjct: 27  MMMHMTFFWGKNAEVLFSGWPGYNNMGMYILALFFVFLLAFFVEWISHTNYIKESANHVA 86

Query: 61  AGFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLN 120
           AG +QTALYGVR+GLA++VMLAVMSFN G+ L A+AG+++GFLV+GSRVF +S +     
Sbjct: 87  AGLIQTALYGVRIGLAYLVMLAVMSFNAGIFLVAIAGHTLGFLVFGSRVFKKSPLTAYAK 146

Query: 121 MSDIPPLNC 129
            SD+PP++C
Sbjct: 147 ASDLPPISC 155

[Close]

BLAST of Carg12399 vs. TrEMBL
Match: tr|A0A0A0LXH5|A0A0A0LXH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.2e-35
Identity = 81/130 (62.31%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 1   MEFHMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFA 60
           ME HMTF+WGK+ EILF GWPGRS  S  I L+FVFL+AF VEWLSHTK T S  D++ A
Sbjct: 1   METHMTFYWGKTIEILFPGWPGRSFFSSVIVLIFVFLLAFTVEWLSHTKFTTSAMDNLTA 60

Query: 61  GFVQTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVFNRSKIDLNLNM 120
           G VQT LYG+RVGLAF+VMLAVMS+N                VYGS++FNRSKID NLN+
Sbjct: 61  GLVQTILYGIRVGLAFIVMLAVMSYNXXXXXXXXXXXXXXXXVYGSKIFNRSKIDPNLNL 120

Query: 121 S--DIPPLNC 129
              D+PPLNC
Sbjct: 121 DSLDLPPLNC 130

[Close]

BLAST of Carg12399 vs. TrEMBL
Match: tr|V4SMC6|V4SMC6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029961mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           H+TFFWG + EILF GWPG S   Y +AL+FVF+++  VEW+SH KL  S   +V +G +
Sbjct: 5   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 64

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF-NRSKIDLNLNMSD 123
           QT +Y  R+GLA++VMLAVMSFN+GVLLAAVAGYSVGFL++GS+VF N  KI+   ++SD
Sbjct: 65  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSD 124

Query: 124 IPPLNC 129
           +PPLNC
Sbjct: 125 LPPLNC 130

[Close]

BLAST of Carg12399 vs. TrEMBL
Match: tr|A0A067FKS2|A0A067FKS2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033054mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.7e-35
Identity = 76/126 (60.32%), Postives = 99/126 (78.57%), Query Frame = 0


Query: 4   HMTFFWGKSAEILFAGWPGRSSLSYAIALVFVFLVAFAVEWLSHTKLTASVADDVFAGFV 63
           H+TFFWG + EILF GWPG S   Y +AL+FVF+++  VEW+SH KL  S   +V +G +
Sbjct: 3   HITFFWGTNTEILFPGWPGESFSCYILALIFVFMISLTVEWISHAKLIKSGISNVASGIL 62

Query: 64  QTALYGVRVGLAFVVMLAVMSFNVGVLLAAVAGYSVGFLVYGSRVF-NRSKIDLNLNMSD 123
           QT +Y  R+GLA++VMLAVMSFN+GVLLAAVAGYSVGFL++GS+VF N  KI+   ++SD
Sbjct: 63  QTLMYAFRIGLAYLVMLAVMSFNIGVLLAAVAGYSVGFLIFGSQVFRNNLKIEPYQDLSD 122

Query: 124 IPPLNC 129
           +PPLNC
Sbjct: 123 LPPLNC 128

The following BLAST results are available for this feature:

BLAST of Carg12399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525766.1	2.2e-62	100.00	copper transporter 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022998910.1	2.8e-62	99.22	copper transporter 1-like [Cucurbita maxima]	[more]
XP_022948639.1	4.9e-62	99.22	copper transporter 1-like [Cucurbita moschata]	[more]
XP_009785614.1	1.3e-35	58.91	PREDICTED: copper transporter 6-like [Nicotiana sylvestris] >XP_016481424.1 PRED...	[more]
KGN65764.1	1.7e-35	62.31	hypothetical protein Csa_1G526835 [Cucumis sativus]	[more]

BLAST of Carg12399 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59030.1	1.9e-28	50.00	copper transporter 1	[more]
AT3G46900.1	7.3e-28	52.21	copper transporter 2	[more]
AT2G26975.1	1.4e-26	52.21	Ctr copper transporter family	[more]
AT5G59040.1	2.1e-22	49.06	copper transporter 3	[more]
AT2G37925.1	8.6e-21	43.86	copper transporter 4	[more]

BLAST of Carg12399 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39065\|COPT1_ARATH	3.5e-27	50.00	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
sp\|Q9STG2\|COPT2_ARATH	1.3e-26	52.21	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
sp\|Q8GWP3\|COPT6_ARATH	2.5e-25	52.21	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
sp\|Q9FGU8\|COPT3_ARATH	3.7e-21	49.06	Copper transporter 3 OS=Arabidopsis thaliana OX=3702 GN=COPT3 PE=2 SV=1	[more]
sp\|Q8SAA5\|COPT4_ARATH	1.6e-19	43.86	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]

BLAST of Carg12399 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4AXZ3\|A0A1S4AXZ3_TOBAC	8.8e-36	58.91	copper transporter 6-like OS=Nicotiana tabacum OX=4097 GN=LOC107802430 PE=4 SV=1	[more]
tr\|A0A1U7XF90\|A0A1U7XF90_NICSY	8.8e-36	58.91	copper transporter 6-like OS=Nicotiana sylvestris OX=4096 GN=LOC104233862 PE=4 S...	[more]
tr\|A0A0A0LXH5\|A0A0A0LXH5_CUCSA	1.2e-35	62.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G526835 PE=4 SV=1	[more]
tr\|V4SMC6\|V4SMC6_9ROSI	5.7e-35	60.32	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029961mg PE=4 ...	[more]
tr\|A0A067FKS2\|A0A067FKS2_CITSI	5.7e-35	60.32	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033054mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005375	copper ion transmembrane transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0035434	copper ion transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR007274	Cop_transporter

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035434	copper ion transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12399-RA	Carg12399-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 5..49 e-value: 8.6E-7 score: 29.6 coord: 58..103 e-value: 2.1E-8 score: 34.8
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 3..128
None	No IPR available	PANTHER	PTHR12483:SF47	COPPER TRANSPORTER 1-RELATED	coord: 3..128

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12399	Silver-seed gourd	carcarB192
Carg12399	Silver-seed gourd	carcarB408
Carg12399	Silver-seed gourd	carcarB449
Carg12399	Cucumber (Gy14) v2	carcgybB0452
Carg12399	Cucumber (Gy14) v2	carcgybB0448
Carg12399	Cucumber (Gy14) v2	carcgybB0450
Carg12399	Cucumber (Gy14) v1	carcgyB0509
Carg12399	Cucumber (Gy14) v1	carcgyB0510
Carg12399	Cucurbita maxima (Rimu)	carcmaB0613
Carg12399	Cucurbita maxima (Rimu)	carcmaB0610
Carg12399	Cucurbita maxima (Rimu)	carcmaB0612
Carg12399	Cucurbita moschata (Rifu)	carcmoB0594
Carg12399	Cucurbita moschata (Rifu)	carcmoB0595
Carg12399	Cucurbita moschata (Rifu)	carcmoB0596
Carg12399	Cucurbita pepo (Zucchini)	carcpeB0619
Carg12399	Cucurbita pepo (Zucchini)	carcpeB0620
Carg12399	Cucurbita pepo (Zucchini)	carcpeB0623
Carg12399	Wild cucumber (PI 183967)	carcpiB0476
Carg12399	Wild cucumber (PI 183967)	carcpiB0478
Carg12399	Cucumber (Chinese Long) v2	carcuB0471
Carg12399	Cucumber (Chinese Long) v2	carcuB0473
Carg12399	Cucumber (Chinese Long) v3	carcucB0472
Carg12399	Cucumber (Chinese Long) v3	carcucB0473
Carg12399	Cucumber (Chinese Long) v3	carcucB0475
Carg12399	Bottle gourd (USVL1VR-Ls)	carlsiB403
Carg12399	Bottle gourd (USVL1VR-Ls)	carlsiB405
Carg12399	Melon (DHL92) v3.5.1	carmeB0449
Carg12399	Melon (DHL92) v3.5.1	carmeB0450
Carg12399	Melon (DHL92) v3.6.1	carmedB0451
Carg12399	Melon (DHL92) v3.6.1	carmedB0453
Carg12399	Watermelon (Charleston Gray)	carwcgB0431
Carg12399	Watermelon (Charleston Gray)	carwcgB0436
Carg12399	Watermelon (97103) v1	carwmB0438
Carg12399	Watermelon (97103) v1	carwmB0440
Carg12399	Watermelon (97103) v1	carwmB0441
Carg12399	Watermelon (97103) v2	carwmbB0463
Carg12399	Watermelon (97103) v2	carwmbB0467
Carg12399	Wax gourd	carwgoB0534
Carg12399	Wax gourd	carwgoB0535