Carg12369-RA (mRNA) Silver-seed gourd

Overview
NameCarg12369-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionGTP-binding protein Obg/CgtA
LocationCucurbita_argyrosperma_scaffold_074 : 607008 .. 609965 (+)
Sequence length949
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATACAAAATTCTAATTTATTTTTATTAATTTAGGCTAAAAAAACCAAATTGTCACTCTTTTTCCTCCCTTGTACCCAGCCGCGCGCCAACCCCTTAGCGGTCGTACTCGTCCAGAAGCTACCCACTAGTCATCTTAGTAGACGGCGTCCTACCGGCCTGCTGCGACCACGAGCGGCGGGGAACGACGACCCTGCGCGTTTCCTCTTCCAGCGACTGATACTCCAAACGGAGACGCGAATCACCTGCGGTGCATCTGTCGGCGGCAGCGCTCCATTCTGAAATACCGGCACACTTCGCTTCTCTATCTCCGGTGATTCACGACGGTAGCACCCACGGCGAATAGCTGCGTGATCTCCTCCTAGAGACAAAATTTGAGCTAGGAGATAGTGAGCCATAACCCGAACGACACCCTGGATAGAACACCCATAGCCTTTAGGGTTCAAATCTACAAAATTGAACTCATTCGAACTCAATCCTGCAAAGACTCGAGCTTTACGGTAAGGATTAGTTGGAAATGGCTCGCTCTAAACTCTTTTTGGATTCCTTCAATGTTTAGGTTTGGACTGTTCGAGTTAAGTTTAATCTCTCACGAACGTCCTTCAATTTTGATTATGGTTTCTGAACTGAGTTGTAACCTTGGAACTTTGTCTTTCTTGTTTCAAGAATTGATAGAATAGCTTAGAAGCGATTTAAAATGTGTTGCAAGTAGTTTCTTCTTGTGGAGTTTGTATACCTTGTATGCTATGTATGCTGGATGCTTTGTTATACTTGTTTGATATGTGTGTTTTTATTTAATGTTATGTTGAACCCGATTGTATGTTTTGATGTGTTACGCTCATTAAGTTATTGTTTTGTGTTGATTAAGCATGTACTGATGTTGGTCCCTGCGTTAAAAGCATGTTCATGTGGTTATTAGGCTGGAAGCATGGTCTAGCAAGCATGTATAAGATGTGCATATCTGGGTTGTTTAGAGACTGATTGTTAAGTTGCGTATATTTGAGTTTGCAATCCAGGAAAGCGAGGACAATATAAGGATCTCGGGTGTAGATGGTCAAGGGTAGATATTATTTTAAGGAAATGAAAGTGAATATCAATGCCTCGAGTATAAATGGAGGTTAGGTATGTCGCTTTTTGGTGTCAAGGCTTTGGGTATAAATGATTGAGGGTCGATGCACAAGTATAAATGTCAAGGGTCAGTGATGAGTCTTAAGGTAAGTATTGGGGCCTTGGGAATAAATGGTCAAGGGTTGATGCACAGTTCAAGGCTTTGGGTATTAATGGTCTAGGGTCGAACGTCAATTTCTATAGAGAAGTGTTGAGACCATGTGTATAAATAGTGAGGTATAAATGGTCAAGGATTGGTGTGATGAGTCTTGTGGAGTCTGGACATAAATGGTCAATGATCAATGCACAGTTTGAGGCTTTGGGTATTAATGATCAAGGATCTGAATGTCGAGTTTCATAAAAGTGTTGAGGCCCCAAGTATAAATAGTCAAGGATTGATGCATCTCGAAGATGTGGGAAAGATTGATAAGAGCTTGGGAAGGGCTTGAGAGAGCTATAAAAAGTTTTAAGGATTCAATATTGTCTTGAGATAGAAGTTGAGCATGTATAATATGAGAATCATGCATGATATAATTTTGATAAGTGAGCATCACGCATATTACTTGGTTCCTCATGGTGAGAAGTATGATCTTATGATGTATGTTGTATGTCGTTTGGATGACTGACAAGAGCGTTTCTGTCCGGTACATGACTTTGGATGGCTGGCCCACTTGGGGAGACTTATATGGTTTTACCAAATTCCTGTTCTATGTTTTTCGTCGTTATATTACTTCTTGGGAACTCCGGATCATTTCTTGTTGACGCTGCTGGATTGACGAAAGTGTAACAGCCCAAGCCCACCGCTAGTAGATATTGTCCTCTTTGGACTTTCCCTTAAGGTTCTTAAGACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAGTGTTTCGTTCTCCTCCTCAACCGATGTGGGATCTCACAGAAAGTCATTGTCCATTTTTCTGGTTGCAAAATAGTCATAACTAGCCATCTGTGTGTACTTTTGTTTTCCTGCTAATGTACAAAGACTAGTAGGTTTTATATCTTAAGTTATTTATTTATATATTATTACTTTTTACTGAAGCTTGCCATGGAATCTTTTCAATTGGAGTTGACCTCGCTCCCCTTATCGAAATCATAATTGTTCTTGCTTCAATTGATTGATATTTAAATTTTGTAGATCTCTTTATTCTAGTTCAAACTTTACAACTTTCCAAAGCATGGATGATGTTTGAGGCGCGAGAGAAGGGAGAACGATGAGGTTTTTGTGCGTAAAACAAGTTCTATATTTGAGAGGCTTGAGAGAAACCTCAAGTTTTCCATGGCTTTTTTCTGCCATTTCCTATTACTCAGATACTCCCTCAAAGAAGTCTAAACTTGCCCCTTTACAGGTTTTTCTTTACTTCTCTTCCATTTTTTCATTACTTTTTTCAATGCAAATTCTTCTACTCATGTTTGGATTTATTGGGTTCCACAGGAGAGGAGAATGATAGACAGGTTTATGATGTATGCCAAAGGAGGTGATGGTGGAAATGGATGCCATAGCACTCGCCGTAGTAGGCAGGATCGCCACGGCCAACCTGATGGTAGGCTTTATGTAATTATTTAATCTCTTAGAATGATAGTCAAGTAAGGAAGATCGAACGGTCCTCTTGGCGTGTATAATTAGGAACTGTTCCCCTTGTCATGAGATAGCTGCTTGACTCTACCACGACGCTTCCTTTCTAATTGATGCAGGTGGAAATGGTGGAAGGGGGGGCAATGTCATTCTTGAATGTTCCGCTGCTCTCTGGGACTTCAGCAGTTTGAAGCATCATATTGTATGTTCGACTCTTATACTCATGCTAGAAACAACTCGGAAATGA

mRNA sequence

AAAAATACAAAATTCTAATTTATTTTTATTAATTTAGGCTAAAAAAACCAAATTGTCACTCTTTTTCCTCCCTTGTACCCAGCCGCGCGCCAACCCCTTAGCGGTCGTACTCGTCCAGAAGCTACCCACTAGTCATCTTAGTAGACGGCGTCCTACCGGCCTGCTGCGACCACGAGCGGCGGGGAACGACGACCCTGCGCGTTTCCTCTTCCAGCGACTGATACTCCAAACGGAGACGCGAATCACCTGCGGTGCATCTGTCGGCGGCAGCGCTCCATTCTGAAATACCGGCACACTTCGCTTCTCTATCTCCGGTGATTCACGACGGTAGCACCCACGGCGAATAGCTGCGTGATCTCCTCCTAGAGACAAAATTTGAGCTAGGAGATAGTGAGCCATAACCCGAACGACACCCTGGATAGAACACCCATAGCCTTTAGGGTTCAAATCTACAAAATTGAACTCATTCGAACTCAATCCTGCAAAGACTCGAGCTTTACGATCTCTTTATTCTAGTTCAAACTTTACAACTTTCCAAAGCATGGATGATGTTTGAGGCGCGAGAGAAGGGAGAACGATGAGGTTTTTGTGCGTAAAACAAGTTCTATATTTGAGAGGCTTGAGAGAAACCTCAAGTTTTCCATGGCTTTTTTCTGCCATTTCCTATTACTCAGATACTCCCTCAAAGAAGTCTAAACTTGCCCCTTTACAGGAGAGGAGAATGATAGACAGGTTTATGATGTATGCCAAAGGAGGTGATGGTGGAAATGGATGCCATAGCACTCGCCGTAGTAGGCAGGATCGCCACGGCCAACCTGATGGTGGAAATGGTGGAAGGGGGGGCAATGTCATTCTTGAATGTTCCGCTGCTCTCTGGGACTTCAGCAGTTTGAAGCATCATATTGTATGTTCGACTCTTATACTCATGCTAGAAACAACTCGGAAATGA

Coding sequence (CDS)

ATGAGGTTTTTGTGCGTAAAACAAGTTCTATATTTGAGAGGCTTGAGAGAAACCTCAAGTTTTCCATGGCTTTTTTCTGCCATTTCCTATTACTCAGATACTCCCTCAAAGAAGTCTAAACTTGCCCCTTTACAGGAGAGGAGAATGATAGACAGGTTTATGATGTATGCCAAAGGAGGTGATGGTGGAAATGGATGCCATAGCACTCGCCGTAGTAGGCAGGATCGCCACGGCCAACCTGATGGTGGAAATGGTGGAAGGGGGGGCAATGTCATTCTTGAATGTTCCGCTGCTCTCTGGGACTTCAGCAGTTTGAAGCATCATATTGTATGTTCGACTCTTATACTCATGCTAGAAACAACTCGGAAATGA

Protein sequence

MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGGDGGNGCHSTRRSRQDRHGQPDGGNGGRGGNVILECSAALWDFSSLKHHIVCSTLILMLETTRK
Homology
[Close]
BLAST of Carg12369-RA vs. NCBI nr
Match: XP_023522978.1 (probable GTP-binding protein OBGM, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVKQVLYLRGLRE+SSFPWLFSAISY SDTPSKKSKLAPLQERRMIDRFMMYAKGG
Sbjct: 1   MRFLCVKQVLYLRGLRESSSFPWLFSAISYCSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 109

[Close]
BLAST of Carg12369-RA vs. NCBI nr
Match: XP_022997993.1 (probable GTP-binding protein OBGM, mitochondrial [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 105/109 (96.33%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVKQVLYLRGLRE+SSFPWLFSAISYYSDTPS K+KLAPLQERRMIDRFM+YAKGG
Sbjct: 9   MRFLCVKQVLYLRGLRESSSFPWLFSAISYYSDTPS-KTKLAPLQERRMIDRFMVYAKGG 68

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI
Sbjct: 69  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 116

[Close]
BLAST of Carg12369-RA vs. NCBI nr
Match: XP_022948603.1 (probable GTP-binding protein OBGM, mitochondrial [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 4.7e-30
Identity = 106/117 (90.60%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 1   MRFLCVK--------QVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDR 60
           MRFLCV+         VLYLRGLRE+SSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDR
Sbjct: 1   MRFLCVRTMXXXXXXXVLYLRGLRESSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDR 60

Query: 61  FMMYAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           FMMYAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI
Sbjct: 61  FMMYAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 117

[Close]
BLAST of Carg12369-RA vs. NCBI nr
Match: XP_004142409.1 (PREDICTED: probable GTP-binding protein OBGM, mitochondrial [Cucumis sativus] >KGN52306.1 hypothetical protein Csa_5G623700 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL+LRGLRE+SS PWLFSAISYYSDTP KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKRVLHLRGLRESSSCPWLFSAISYYSDTPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFSSL HHI  S
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSSLNHHINAS 112

[Close]
BLAST of Carg12369-RA vs. NCBI nr
Match: ADN34199.1 (mitochondrial GTPase [Cucumis melo subsp. melo])

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL LRGLRE+SS PWLFSAISYYSD P KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKKVLRLRGLRESSSCPWLFSAISYYSDAPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFS+L HHI  S
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSTLNHHIKAS 112

[Close]
BLAST of Carg12369-RA vs. TAIR10
Match: AT1G07615.1 (GTP-binding protein Obg/CgtA)

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-13
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 9   VLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGGXXXXXXXX 68
           V YL   +     PW+ + + +YSD   KK K+APLQE RM DRF +YA+GG XXXXXXX
Sbjct: 10  VRYLGSYKRPQKPPWMRNPVVFYSDFSEKKGKVAPLQETRMRDRFTLYARGGEXXXXXXX 69

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           XXXXXXXXXXXXXXXXXXXXX VILEC+ A+WDFS L+ HI
Sbjct: 70  XXXXXXXXXXXXXXXXXXXXXDVILECTHAVWDFSGLQPHI 110

[Close]
BLAST of Carg12369-RA vs. Swiss-Prot
Match: sp|F4HSD4|OBGM_ARATH (Probable GTP-binding protein OBGM, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ATOBGM PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-12
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 9   VLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGGXXXXXXXX 68
           V YL   +     PW+ + + +YSD   KK K+APLQE RM DRF +YA+GG XXXXXXX
Sbjct: 10  VRYLGSYKRPQKPPWMRNPVVFYSDFSEKKGKVAPLQETRMRDRFTLYARGGEXXXXXXX 69

Query: 69  XXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           XXXXXXXXXXXXXXXXXXXXX VILEC+ A+WDFS L+ HI
Sbjct: 70  XXXXXXXXXXXXXXXXXXXXXDVILECTHAVWDFSGLQPHI 110

[Close]
BLAST of Carg12369-RA vs. Swiss-Prot
Match: sp|Q2QZ37|OBGM_ORYSJ (Probable GTP-binding protein OBGM, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=OBGM PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 34/84 (40.48%), Postives = 42/84 (50.00%), Query Frame = 0 

Query: 30  YYSDTP-SKKSKLAPLQERRMIDRFMMYAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX 89
           YY+  P  +K K APLQ R M+DRF + AKGG                        XX  
Sbjct: 26  YYATEPEGRKPKTAPLQSRGMVDRFRLRAKGGDGGNGCISLRRSRSDRQGKPDGGNXXRG 85

Query: 90  XXVILECSAALWDFSSLKHHIVCS 113
             VILECS ++WDFS L+HH+  S
Sbjct: 86  GDVILECSRSVWDFSGLQHHMKAS 109

[Close]
BLAST of Carg12369-RA vs. TrEMBL
Match: tr|A0A0A0KWW4|A0A0A0KWW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623700 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.7e-29
Identity = 100/112 (89.29%), Postives = 104/112 (92.86%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL+LRGLRE+SS PWLFSAISYYSDTP KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKRVLHLRGLRESSSCPWLFSAISYYSDTPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFSSL HHI  S
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSSLNHHINAS 112

[Close]
BLAST of Carg12369-RA vs. TrEMBL
Match: tr|A0A1S3BG88|A0A1S3BG88_CUCME (probable GTP-binding protein OBGM, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489498 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL LRGLRE+SS PWLFSAISYYSD P KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKKVLRLRGLRESSSCPWLFSAISYYSDAPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFS+L HHI  S
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSTLNHHIKAS 112

[Close]
BLAST of Carg12369-RA vs. TrEMBL
Match: tr|E5GCK2|E5GCK2_CUCME (Mitochondrial GTPase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-27
Identity = 98/112 (87.50%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL LRGLRE+SS PWLFSAISYYSD P KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKKVLRLRGLRESSSCPWLFSAISYYSDAPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFS+L HHI  S
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSTLNHHIKAS 112

[Close]
BLAST of Carg12369-RA vs. TrEMBL
Match: tr|A0A1S3BGW6|A0A1S3BGW6_CUCME (probable GTP-binding protein OBGM, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489498 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 97/109 (88.99%), Postives = 101/109 (92.66%), Query Frame = 0 

Query: 1   MRFLCVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGG 60
           MRFLCVK+VL LRGLRE+SS PWLFSAISYYSD P KKSKLAPLQERRMIDRF +YAKGG
Sbjct: 1   MRFLCVKKVLRLRGLRESSSCPWLFSAISYYSDAPKKKSKLAPLQERRMIDRFKVYAKGG 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHI 110
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VILECS ALWDFS+L HHI
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILECSTALWDFSTLNHHI 109

[Close]
BLAST of Carg12369-RA vs. TrEMBL
Match: tr|A0A2P4HU61|A0A2P4HU61_QUESU (Putative gtp-binding protein obgm, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_38343 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.2e-19
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 0 

Query: 5   CVKQVLYLRGLRETSSFPWLFSAISYYSDTPSKKSKLAPLQERRMIDRFMMYAKGGXXXX 64
           CVK +  L  LR++S  PWLFS  S YSDTP +KSKLAPLQER+MIDRF +YAKGGXXXX
Sbjct: 3   CVKPLWQLEALRQSSKSPWLFSLFSLYSDTPHRKSKLAPLQERKMIDRFRLYAKGGXXXX 62

Query: 65  XXXXXXXXXXXXXXXXXXXXXXXXXXVILECSAALWDFSSLKHHIVCS 113
           XXXXXXXXXXXXXXXXXXXXXXXXX VILECS  +WDFS L+HH+  +
Sbjct: 63  XXXXXXXXXXXXXXXXXXXXXXXXXDVILECSPTVWDFSGLQHHVAAN 110

The following BLAST results are available for this feature:
BLAST of Carg12369-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023522978.12.9e-3298.17probable GTP-binding protein OBGM, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022997993.11.6e-3096.33probable GTP-binding protein OBGM, mitochondrial [Cucurbita maxima][more]
XP_022948603.14.7e-3090.60probable GTP-binding protein OBGM, mitochondrial [Cucurbita moschata][more]
XP_004142409.11.2e-2889.29PREDICTED: probable GTP-binding protein OBGM, mitochondrial [Cucumis sativus] >K... [more]
ADN34199.12.2e-2787.50mitochondrial GTPase [Cucumis melo subsp. melo][more]
BLAST of Carg12369-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07615.13.7e-1365.35GTP-binding protein Obg/CgtA[more]
BLAST of Carg12369-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4HSD4|OBGM_ARATH6.7e-1265.35Probable GTP-binding protein OBGM, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
sp|Q2QZ37|OBGM_ORYSJ1.0e-0740.48Probable GTP-binding protein OBGM, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Carg12369-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KWW4|A0A0A0KWW4_CUCSA7.7e-2989.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623700 PE=4 SV=1[more]
tr|A0A1S3BG88|A0A1S3BG88_CUCME1.4e-2787.50probable GTP-binding protein OBGM, mitochondrial isoform X1 OS=Cucumis melo OX=3... [more]
tr|E5GCK2|E5GCK2_CUCME1.4e-2787.50Mitochondrial GTPase OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3BGW6|A0A1S3BGW6_CUCME1.9e-2788.99probable GTP-binding protein OBGM, mitochondrial isoform X2 OS=Cucumis melo OX=3... [more]
tr|A0A2P4HU61|A0A2P4HU61_QUESU7.2e-1974.07Putative gtp-binding protein obgm, mitochondrial OS=Quercus suber OX=58331 GN=CF... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006169GTP1_OBG_dom
IPR036726GTP1_OBG_dom_sf
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg12369Carg12369gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg12369-RACarg12369-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12369-RA.exon.1Carg12369-RA.exon.1exon
Carg12369-RA.exon.2Carg12369-RA.exon.2exon
Carg12369-RA.exon.3Carg12369-RA.exon.3exon
Carg12369-RA.exon.4Carg12369-RA.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12369-RA.five_prime_UTR.1Carg12369-RA.five_prime_UTR.1five_prime_UTR
Carg12369-RA.five_prime_UTR.2Carg12369-RA.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg12369-RA.CDS.1Carg12369-RA.CDS.1CDS
Carg12369-RA.CDS.2Carg12369-RA.CDS.2CDS
Carg12369-RA.CDS.3Carg12369-RA.CDS.3CDS


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036726GTP1/OBG domain superfamilyGENE3DG3DSA:2.70.210.12coord: 45..113
e-value: 1.6E-16
score: 62.1
IPR036726GTP1/OBG domain superfamilySUPERFAMILYSSF82051Obg GTP-binding protein N-terminal domaincoord: 49..110
IPR006169GTP1/OBG domainPFAMPF01018GTP1_OBGcoord: 50..108
e-value: 4.4E-16
score: 58.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..87
NoneNo IPR availablePANTHERPTHR11702DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATEDcoord: 36..109
NoneNo IPR availablePANTHERPTHR11702:SF31MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2coord: 36..109