Carg12368-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12368-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Fasciclin-like arabinogalactan family protein
Location	Cucurbita_argyrosperma_scaffold_074 : 604989 .. 606705 (-)
Sequence length	1314

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACTCGCATTTCCCATTTTACCCCTATCCCTTCCCTCTTTTTCCTCCTCCTCCTCCTCTCCTCCTCCTCCCTTTCCCCTGTCCTTGCCCTAGACATCTCCTCCCTCCTCTCCTCCTTCCCCGACCTCTCCGATTTCGCCGCCCTTCTCTCCGCCTCCATCCTCTCAGATCTCAATCAACTCACCTCCCTCACTCTCCTCGCCGTCCCTAATTCCTACCTCGCCGCCTCCTCCGATCTCACTCACCGCATCCCTCAATCCTCCCTTGCCGATGTCCTCCGCTACCATGTCCTCCTCCAGTACCTCTCCCCTTCCGACCTCCGTCAGATCTCCCCTTCCGGCAAGCTCGTCACTACTCTCTTTCAAACTACTGGCCGTGCCACCAGCGATTTCGGCTCCGTCAACATCACTCGCGACCCACTCGACGGTCTTGTTTCTGTTCACTCCCCTGTTCCTTTCTCCTCTTCCAATGCTACTGTTTTGACGCTTCTTAAGAATCTTCCTTATAATGTCAGTATCTTTGCTGTTAATGCCCTTCTTGTCCCTTATGGATTTGATCTCATGGCGTCAGAAACTCGCCCGCCGTTGGGCTTGAATATCACTAGGGCTTTGATTGATGGCCATAATTTTAATGTTGCTGCCTCCATGCTTTTGGCTTCTGGTGTTGTTGATGAGTTTGAGGCCGATGAAGGCGGCGCTGGGATTACGCTTTTCGTTCCTACTGACTCCGCGTTTTCCGACCTTCCGCCCACAGTGAAGCTCCAGTCGCTGCCAGCGGATAAGAAGGCCGTTGTCTTGAAATTTCATGTGCTTCATTCTTATTACCCTCTCGGGTCTTTGGAATCGATTGTGAACCCTGTTCAGCCCACTTTAGCGACGGAGGATATGGGCGCCGGTAGCTTCACACTCAACATTTCGCGAGTTAACGGCTCAGTTGGGATCAATACCGGAATTGTTCAAGCATCGGTGACTCAGACGGTGTTCGATCAGAAGCCGGTCGCCATTTTTGGGGTTTCGGAAGTGCTATTGCCGAAGGAGATATTTGGGAACAATCCGATGATGACAATCAAGCCTGCAAATGAAACTATGGTCAGTGCTCAACCACCGGATGCAGTGGCAGCTATGTCGCCACAATCTAATGGACCGCCGTTACATCTTTCATCTCCACCAGGGTATCGTGAGGAAATCCGATCGGTTGCCGCCGGTAACGGCGTACTGAATTTCTTCCTGACTCTATGTTGTTGTATAGCATTGTATTTAATTCAGTAGTATAATATTCGATTGATTTTTCCCCGTGACAGTTGTTTTCATATTACGGGTTTCCTTTTTTTTTTTTTTCTTTTGGGTCTCTTTTTACACGATGATTCGAATGAATTGGGCTACAAAAAGTAGCAGCCAATTTTCCTTCCTGTAATTCGTTCCGTCGATTTCCATCTCTGTGTGGTGTAAATTAAAAGAAATCATACTGGTTTTGGAGATCTGCGGTGGTTTCAGTTTTGGATTTGCAGGTGTTTATGAGCAGCGAAAATGGTGGACGGACGGAAGGAAGGAAGGAAGGAAGGTAGGAAGGTAGGAAGGGGAAGCAATCTGTGGCTCAGAGATGTTGCCTCCTCATGTGTCATCTTCCCCAACAGATCAGGTTTCGTTTGTTTGGTTGCAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCGAACTCCGAGGATCAGCTCTAA

mRNA sequence

ATGGGCACTCGCATTTCCCATTTTACCCCTATCCCTTCCCTCTTTTTCCTCCTCCTCCTCCTCTCCTCCTCCTCCCTTTCCCCTGTCCTTGCCCTAGACATCTCCTCCCTCCTCTCCTCCTTCCCCGACCTCTCCGATTTCGCCGCCCTTCTCTCCGCCTCCATCCTCTCAGATCTCAATCAACTCACCTCCCTCACTCTCCTCGCCGTCCCTAATTCCTACCTCGCCGCCTCCTCCGATCTCACTCACCGCATCCCTCAATCCTCCCTTGCCGATGTCCTCCGCTACCATGTCCTCCTCCAGTACCTCTCCCCTTCCGACCTCCGTCAGATCTCCCCTTCCGGCAAGCTCGTCACTACTCTCTTTCAAACTACTGGCCGTGCCACCAGCGATTTCGGCTCCGTCAACATCACTCGCGACCCACTCGACGGTCTTGTTTCTGTTCACTCCCCTGTTCCTTTCTCCTCTTCCAATGCTACTGTTTTGACGCTTCTTAAGAATCTTCCTTATAATGTCAGTATCTTTGCTGTTAATGCCCTTCTTGTCCCTTATGGATTTGATCTCATGGCGTCAGAAACTCGCCCGCCGTTGGGCTTGAATATCACTAGGGCTTTGATTGATGGCCATAATTTTAATGTTGCTGCCTCCATGCTTTTGGCTTCTGGTGTTGTTGATGAGTTTGAGGCCGATGAAGGCGGCGCTGGGATTACGCTTTTCGTTCCTACTGACTCCGCGTTTTCCGACCTTCCGCCCACAGTGAAGCTCCAGTCGCTGCCAGCGGATAAGAAGGCCGTTGTCTTGAAATTTCATGTGCTTCATTCTTATTACCCTCTCGGGTCTTTGGAATCGATTGTGAACCCTGTTCAGCCCACTTTAGCGACGGAGGATATGGGCGCCGGTAGCTTCACACTCAACATTTCGCGAGTTAACGGCTCAGTTGGGATCAATACCGGAATTGTTCAAGCATCGGTGACTCAGACGGTGTTCGATCAGAAGCCGGTCGCCATTTTTGGGGTTTCGGAAGTGCTATTGCCGAAGGAGATATTTGGGAACAATCCGATGATGACAATCAAGCCTGCAAATGAAACTATGGTCAGTGCTCAACCACCGGATGCAGTGGCAGCTATGTCGCCACAATCTAATGGACCGCCGTTACATCTTTCATCTCCACCAGGGTATCGTGAGGAAATCCGATCGGTTGCCGCCGGTGTTTATGAGCAGCGAAAATGGTGGACGGACGGAAGGAAGGAAGGAAGGAAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCGAACTCCGAGGATCAGCTCTAA

Coding sequence (CDS)

ATGGGCACTCGCATTTCCCATTTTACCCCTATCCCTTCCCTCTTTTTCCTCCTCCTCCTCCTCTCCTCCTCCTCCCTTTCCCCTGTCCTTGCCCTAGACATCTCCTCCCTCCTCTCCTCCTTCCCCGACCTCTCCGATTTCGCCGCCCTTCTCTCCGCCTCCATCCTCTCAGATCTCAATCAACTCACCTCCCTCACTCTCCTCGCCGTCCCTAATTCCTACCTCGCCGCCTCCTCCGATCTCACTCACCGCATCCCTCAATCCTCCCTTGCCGATGTCCTCCGCTACCATGTCCTCCTCCAGTACCTCTCCCCTTCCGACCTCCGTCAGATCTCCCCTTCCGGCAAGCTCGTCACTACTCTCTTTCAAACTACTGGCCGTGCCACCAGCGATTTCGGCTCCGTCAACATCACTCGCGACCCACTCGACGGTCTTGTTTCTGTTCACTCCCCTGTTCCTTTCTCCTCTTCCAATGCTACTGTTTTGACGCTTCTTAAGAATCTTCCTTATAATGTCAGTATCTTTGCTGTTAATGCCCTTCTTGTCCCTTATGGATTTGATCTCATGGCGTCAGAAACTCGCCCGCCGTTGGGCTTGAATATCACTAGGGCTTTGATTGATGGCCATAATTTTAATGTTGCTGCCTCCATGCTTTTGGCTTCTGGTGTTGTTGATGAGTTTGAGGCCGATGAAGGCGGCGCTGGGATTACGCTTTTCGTTCCTACTGACTCCGCGTTTTCCGACCTTCCGCCCACAGTGAAGCTCCAGTCGCTGCCAGCGGATAAGAAGGCCGTTGTCTTGAAATTTCATGTGCTTCATTCTTATTACCCTCTCGGGTCTTTGGAATCGATTGTGAACCCTGTTCAGCCCACTTTAGCGACGGAGGATATGGGCGCCGGTAGCTTCACACTCAACATTTCGCGAGTTAACGGCTCAGTTGGGATCAATACCGGAATTGTTCAAGCATCGGTGACTCAGACGGTGTTCGATCAGAAGCCGGTCGCCATTTTTGGGGTTTCGGAAGTGCTATTGCCGAAGGAGATATTTGGGAACAATCCGATGATGACAATCAAGCCTGCAAATGAAACTATGGTCAGTGCTCAACCACCGGATGCAGTGGCAGCTATGTCGCCACAATCTAATGGACCGCCGTTACATCTTTCATCTCCACCAGGGTATCGTGAGGAAATCCGATCGGTTGCCGCCGGTGTTTATGAGCAGCGAAAATGGTGGACGGACGGAAGGAAGGAAGGAAGGAAGCCATTTCTCTGGGCTCTAGCTCTGCACAAGCCGAACTCCGAGGATCAGCTCTAA

Protein sequence

MGTRISHFTPIPSLFFLLLLLSSSSLSPVLALDISSLLSSFPDLSDFAALLSASILSDLNQLTSLTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAGVYEQRKWWTDGRKEGRKPFLWALALHKPNSEDQL

Homology

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BLAST of Carg12368-RA vs. NCBI nr
Match: XP_022997926.1 (fasciclin-like arabinogalactan protein 4 [Cucurbita maxima])

HSP 1 Score: 690.6 bits (1781), Expect = 3.3e-195
Identity = 366/403 (90.82%), Postives = 368/403 (91.32%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDIXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGTRISHFTPIPSL FLLLLLSS   SP+LALDI                          
Sbjct: 1   MGTRISHFTPIPSLVFLLLLLSSSSPSPILALDISSLLSSFPDLSDFAALLSASILSDLN 60

Query: 61  XXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120
                TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT
Sbjct: 61  QLTSLTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120

Query: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 180
           LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVN+L
Sbjct: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNSL 180

Query: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240
           LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV
Sbjct: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240

Query: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300
           PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG
Sbjct: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300

Query: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 360
           SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA
Sbjct: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 360

Query: 361 NETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAG 404
           NETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAG
Sbjct: 361 NETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAG 403

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BLAST of Carg12368-RA vs. NCBI nr
Match: XP_022949328.1 (fasciclin-like arabinogalactan protein 4 [Cucurbita moschata] >XP_022949329.1 fasciclin-like arabinogalactan protein 4 [Cucurbita moschata])

HSP 1 Score: 679.5 bits (1752), Expect = 7.7e-192
Identity = 362/403 (89.83%), Postives = 363/403 (90.07%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDIXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGTRISHFTPIPSLFF       XX SP+LALDI                          
Sbjct: 1   MGTRISHFTPIPSLFFXXXXXXXXXXSPLLALDISSLLSSFPDLSDFAALLSASILSDLN 60

Query: 61  XXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120
                TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT
Sbjct: 61  QLTSLTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120

Query: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 180
           LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL
Sbjct: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 180

Query: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240
           LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV
Sbjct: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240

Query: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300
           PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG
Sbjct: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300

Query: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 360
           SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA
Sbjct: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 360

Query: 361 NETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAG 404
           NETMVSAQPPDAV AMSPQSNGPPLHLSSPPGYREEIRSVAAG
Sbjct: 361 NETMVSAQPPDAVGAMSPQSNGPPLHLSSPPGYREEIRSVAAG 403

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BLAST of Carg12368-RA vs. NCBI nr
Match: XP_023523051.1 (fasciclin-like arabinogalactan protein 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 678.7 bits (1750), Expect = 1.3e-191
Identity = 362/403 (89.83%), Postives = 364/403 (90.32%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDIXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGTRISHFTPIPSLFF       XX SPVLALDI                          
Sbjct: 1   MGTRISHFTPIPSLFFXXXXXXXXXPSPVLALDISSLLSSFPDLSDFAALLSTSILSDLN 60

Query: 61  XXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120
                TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT
Sbjct: 61  QLTSLTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 120

Query: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 180
           LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL
Sbjct: 121 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 180

Query: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240
           LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV
Sbjct: 181 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 240

Query: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300
           PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG
Sbjct: 241 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 300

Query: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 360
           SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNP+MTIKPA
Sbjct: 301 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPIMTIKPA 360

Query: 361 NETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAAG 404
           NETMVSAQPPDA+AAMSPQSNGPPLHLSSPPGYREEIRSVAAG
Sbjct: 361 NETMVSAQPPDAMAAMSPQSNGPPLHLSSPPGYREEIRSVAAG 403

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BLAST of Carg12368-RA vs. NCBI nr
Match: XP_004150187.1 (PREDICTED: fasciclin-like arabinogalactan protein 4 [Cucumis sativus] >KGN65714.1 hypothetical protein Csa_1G507470 [Cucumis sativus])

HSP 1 Score: 609.0 bits (1569), Expect = 1.3e-170
Identity = 346/403 (85.86%), Postives = 361/403 (89.58%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDI-XXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGT ISHFTP+  L+FLLL       SP+LAL+          XXXXXXXXXXXXXXXX 
Sbjct: 4   MGTPISHFTPLHLLYFLLL-----SSSPILALNFSSLLSSFPDXXXXXXXXXXXXXXXXL 63

Query: 61  XXXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVT 120
                 TLLAVPNSYLAASSDLTHRIP SSLAD+LRYHVLLQYLSPSDLR ISPSGKLVT
Sbjct: 64  NHRTSLTLLAVPNSYLAASSDLTHRIPPSSLADLLRYHVLLQYLSPSDLRHISPSGKLVT 123

Query: 121 TLFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNA 180
           TLFQTTGRATSDFGSVNITR+PLDG+VSVHSPVPFSSSNATVLTLL+NLPYNVSIFAVNA
Sbjct: 124 TLFQTTGRATSDFGSVNITRNPLDGVVSVHSPVPFSSSNATVLTLLQNLPYNVSIFAVNA 183

Query: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLF 240
           LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASML ASGVV+EFEADEGGAGITLF
Sbjct: 184 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 243

Query: 241 VPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300
           VPTD AFSDLP TVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA
Sbjct: 244 VPTDVAFSDLPGTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 303

Query: 301 GSFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKP 360
           G FTLNISRVNGSVGINTGIVQASVTQTVFDQ PVAIFGVSEVLLP+EIFGNNPMMT KP
Sbjct: 304 GRFTLNISRVNGSVGINTGIVQASVTQTVFDQNPVAIFGVSEVLLPREIFGNNPMMTAKP 363

Query: 361 ANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAA 403
            NE + +AQPP+ + AMSP+SNGP LHLSSPPGY EEIRSVAA
Sbjct: 364 RNEIVGNAQPPEGM-AMSPESNGPQLHLSSPPGYGEEIRSVAA 400

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BLAST of Carg12368-RA vs. NCBI nr
Match: XP_022965003.1 (fasciclin-like arabinogalactan protein 4 [Cucurbita moschata])

HSP 1 Score: 602.8 bits (1553), Expect = 9.1e-169
Identity = 327/402 (81.34%), Postives = 345/402 (85.82%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDI-XXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGTRISHFTPI  L+FLLL   S   SP+LAL+I                          
Sbjct: 1   MGTRISHFTPILFLYFLLL---SSPPSPILALNISSLLSSFPDLSHFAALLSASSILSDL 60

Query: 61  XXXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVT 120
                 TLLAVPNSYL ASSDLT RIP SSLAD+LRYHVLLQYLSP DLR ISPSGKLVT
Sbjct: 61  NHRTSLTLLAVPNSYLDASSDLTRRIPPSSLADLLRYHVLLQYLSPYDLRHISPSGKLVT 120

Query: 121 TLFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNA 180
           TLFQTTGRATSDFGS+NITR+PLDG+VS+HSPVPFSSSNATVLTLLKNLPYNVSIFAVNA
Sbjct: 121 TLFQTTGRATSDFGSLNITRNPLDGIVSLHSPVPFSSSNATVLTLLKNLPYNVSIFAVNA 180

Query: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLF 240
           LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASML ASGVV+EFEADEGGAGITLF
Sbjct: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 240

Query: 241 VPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300
           VPTD+AFSDLP TV LQSL ADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA
Sbjct: 241 VPTDTAFSDLPGTVSLQSLSADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300

Query: 301 GSFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKP 360
           GSFTLNISRVNGSVGINTGIVQASVTQTV DQ PVAIFGVSEVLLP+EIFGN+PMMT +P
Sbjct: 301 GSFTLNISRVNGSVGINTGIVQASVTQTVIDQNPVAIFGVSEVLLPREIFGNSPMMTTQP 360

Query: 361 ANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVA 402
            NE + SAQPPD++ AMSP+S+GPPLHLSSPPGY EEIRSVA
Sbjct: 361 GNEIVSSAQPPDSM-AMSPESSGPPLHLSSPPGYGEEIRSVA 398

[Close]

BLAST of Carg12368-RA vs. TAIR10
Match: AT3G46550.1 (Fasciclin-like arabinogalactan family protein)

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-99
Identity = 204/349 (58.45%), Postives = 251/349 (71.92%), Query Frame = 0


Query: 66  TLLAVPNS-YLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQT 125
           TLLAVPNS + +AS DLT R+P S+LAD+LR+HVLLQ+LS SDLR+I PSG  VTTL++ 
Sbjct: 64  TLLAVPNSQFSSASLDLTRRLPPSALADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEA 123

Query: 126 TGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPY 185
           +GR     GSVN+TRDP  G V++ SP   ++ N TVL LL+  P N+++  V++L+VP 
Sbjct: 124 SGRTFFGSGSVNVTRDPASGSVTIGSP---ATKNVTVLKLLETKPPNITVLTVDSLIVPT 183

Query: 186 GFDLMASETRPP-----------LGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGG 245
           G D+ ASET  P              N+T+ LI+GHNFNVA S+L+ASGV+ EFE DE G
Sbjct: 184 GIDITASETLTPPPTXXXXXXXXXXXNLTQILINGHNFNVALSLLVASGVITEFENDERG 243

Query: 246 AGITLFVPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLA 305
           AGIT+FVPTDSAFSDLP  V LQSLPA++KA VLKFHVLHSYY LGSLESI NPVQPTLA
Sbjct: 244 AGITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLA 303

Query: 306 TEDMGAGSFTLNISRVNGS-VGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 365
           TE+MGAGS+TLNISRVNGS V IN+G+V A VTQT FDQ PV++FGVS+VLLPKE+F   
Sbjct: 304 TEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF--- 363

Query: 366 PMMTIKPANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVA 402
                 P +   V+  PP  ++     S+  P  L SPP  RE + S A
Sbjct: 364 ------PKSGQPVATAPPQEISLSPESSSEQPSRLVSPP--REIVSSGA 398

[Close]

BLAST of Carg12368-RA vs. TAIR10
Match: AT3G60900.1 (FASCICLIN-like arabinogalactan-protein 10)

HSP 1 Score: 137.5 bits (345), Expect = 2.0e-32
Identity = 97/287 (33.80%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+L + N    A S L  + P S + + L   VLL Y  P  L Q+S    L TTL+QTT
Sbjct: 61  TVLVLNN---GAMSSLAGKHPLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTT 120

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A  + G VN+T D   G V   S  P S  +++    +K +PYN+S+  +NA ++  G
Sbjct: 121 GHALGNLGFVNVT-DLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPG 180

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
             ++ +      G++    L++       A++L++SGV+  FE+     G+T+F P+D A
Sbjct: 181 --ILTAPAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV-EKGLTVFAPSDEA 240

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
           F        L +L   +   +L++H L  Y P GSL++  + +  TLAT   GAG + L 
Sbjct: 241 FK-ARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAIS-TLATN--GAGKYDLT 300

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 353
            S     V ++TG+  + +  TV D+ PV IF V  VLLP E+FG +
Sbjct: 301 TSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKS 336

[Close]

BLAST of Carg12368-RA vs. TAIR10
Match: AT2G45470.1 (FASCICLIN-like arabinogalactan protein 8)

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-31
Identity = 100/289 (34.60%), Postives = 147/289 (50.87%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+L + N    A S L  + P S +   L   VLL Y  P  L +IS    L TTL+QTT
Sbjct: 61  TVLVLNN---GAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTT 120

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A  + G VNIT D   G V   S    S  +++    +K +PYN+SI  ++A ++  G
Sbjct: 121 GNAPGNLGFVNIT-DLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPG 180

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
              + +   P   L+    L++       A++L++SGV+  +E+     G+T+F P+D A
Sbjct: 181 ---VLTAPAPSASLSNITGLLEKAGCKTFANLLVSSGVLKTYES-AVEKGLTVFAPSDEA 240

Query: 246 F--SDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFT 305
           F    +P   KL      +   +L++H L  Y P GSL++  N +  TLAT   GAG F 
Sbjct: 241 FKAEGVPDLTKLTQA---EVVSLLEYHALAEYKPKGSLKTNKNNIS-TLATN--GAGKFD 300

Query: 306 LNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 353
           L  S     V ++TG+  + +  TV D  PV IF V  VLLP E+FG +
Sbjct: 301 LTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKS 335

[Close]

BLAST of Carg12368-RA vs. TAIR10
Match: AT5G55730.1 (FASCICLIN-like arabinogalactan 1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-26
Identity = 93/284 (32.75%), Postives = 141/284 (49.65%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+ AV N+ ++A +   + +  S+L ++L  HVLL Y     L QI     L  TLFQ T
Sbjct: 60  TVCAVDNAAMSALTSKGYTL--STLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQAT 119

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A    G VNIT D   G V    P     S+  V + ++ +PYN+SI  ++ +L    
Sbjct: 120 GAAPGTSGFVNIT-DLRGGKVG-FGPDGGDLSSFFVKS-IEEVPYNISIIQISRVLPS-- 179

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
            +  A+ T  P  +N+T  ++  H   V A  LL +    +   +    G+T+F P D A
Sbjct: 180 -ETAAAPTPAPAEMNLT-GIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDA 239

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
                P  K ++L A KK   L F  + +YY +  L+S   P+  TLAT+  GA  F L 
Sbjct: 240 MKGFLP--KYKNLTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMN-TLATD--GANKFELT 299

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIF 350
           +      V + T I    +  T+ D++P+AI+   +VLLPKE+F
Sbjct: 300 VQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELF 329

[Close]

BLAST of Carg12368-RA vs. TAIR10
Match: AT4G12730.1 (FASCICLIN-like arabinogalactan 2)

HSP 1 Score: 105.5 bits (262), Expect = 8.3e-23
Identity = 90/284 (31.69%), Postives = 140/284 (49.30%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+LAV NS  A SS L++      + ++L  HVL+ Y     L QI+       ++FQ+T
Sbjct: 62  TVLAVDNS--AMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQST 121

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G AT   G +NIT D   G V+       S   A  +  +   PYN+S+  ++ +L    
Sbjct: 122 GSATGTSGYINIT-DIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSPE 181

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
            +   + T  P  L +T  +++       + +L ++G    F+ D    G+T+F P+DSA
Sbjct: 182 AE---APTASPSDLILT-TILEKQGCKAFSDILKSTGADKTFQ-DTVDGGLTVFCPSDSA 241

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
                P  K  S PA+K A+VL +H +  Y  L  L S  N    TLATE  G   F   
Sbjct: 242 VGKFMPKFKSLS-PANKTALVL-YHGMPVYQSLQMLRS-GNGAVNTLATE--GNNKFDFT 301

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIF 350
           +      V + T +V A V  T+ DQ+P+ ++ + +VLLP+EI+
Sbjct: 302 VQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIY 332

[Close]

BLAST of Carg12368-RA vs. Swiss-Prot
Match: sp|Q9SNC3|FLA4_ARATH (Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana OX=3702 GN=FLA4 PE=1 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 2.0e-98
Identity = 204/349 (58.45%), Postives = 251/349 (71.92%), Query Frame = 0


Query: 66  TLLAVPNS-YLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQT 125
           TLLAVPNS + +AS DLT R+P S+LAD+LR+HVLLQ+LS SDLR+I PSG  VTTL++ 
Sbjct: 64  TLLAVPNSQFSSASLDLTRRLPPSALADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEA 123

Query: 126 TGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPY 185
           +GR     GSVN+TRDP  G V++ SP   ++ N TVL LL+  P N+++  V++L+VP 
Sbjct: 124 SGRTFFGSGSVNVTRDPASGSVTIGSP---ATKNVTVLKLLETKPPNITVLTVDSLIVPT 183

Query: 186 GFDLMASETRPP-----------LGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGG 245
           G D+ ASET  P              N+T+ LI+GHNFNVA S+L+ASGV+ EFE DE G
Sbjct: 184 GIDITASETLTPPPTXXXXXXXXXXXNLTQILINGHNFNVALSLLVASGVITEFENDERG 243

Query: 246 AGITLFVPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLA 305
           AGIT+FVPTDSAFSDLP  V LQSLPA++KA VLKFHVLHSYY LGSLESI NPVQPTLA
Sbjct: 244 AGITVFVPTDSAFSDLPSNVNLQSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLA 303

Query: 306 TEDMGAGSFTLNISRVNGS-VGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 365
           TE+MGAGS+TLNISRVNGS V IN+G+V A VTQT FDQ PV++FGVS+VLLPKE+F   
Sbjct: 304 TEEMGAGSYTLNISRVNGSIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF--- 363

Query: 366 PMMTIKPANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVA 402
                 P +   V+  PP  ++     S+  P  L SPP  RE + S A
Sbjct: 364 ------PKSGQPVATAPPQEISLSPESSSEQPSRLVSPP--REIVSSGA 398

[Close]

BLAST of Carg12368-RA vs. Swiss-Prot
Match: sp|Q9LZX4|FLA10_ARATH (Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.5e-31
Identity = 97/287 (33.80%), Postives = 150/287 (52.26%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+L + N    A S L  + P S + + L   VLL Y  P  L Q+S    L TTL+QTT
Sbjct: 61  TVLVLNN---GAMSSLAGKHPLSVVKNALSLLVLLDYYDPLKLHQLSKGTTLTTTLYQTT 120

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A  + G VN+T D   G V   S  P S  +++    +K +PYN+S+  +NA ++  G
Sbjct: 121 GHALGNLGFVNVT-DLKGGKVGFGSAAPGSKLDSSYTKSVKQIPYNISVLEINAPIIAPG 180

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
             ++ +      G++    L++       A++L++SGV+  FE+     G+T+F P+D A
Sbjct: 181 --ILTAPAPSSAGVSNITGLLEKAGCKTFANLLVSSGVIKTFESTV-EKGLTVFAPSDEA 240

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
           F        L +L   +   +L++H L  Y P GSL++  + +  TLAT   GAG + L 
Sbjct: 241 FK-ARGVPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAIS-TLATN--GAGKYDLT 300

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 353
            S     V ++TG+  + +  TV D+ PV IF V  VLLP E+FG +
Sbjct: 301 TSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELFGKS 336

[Close]

BLAST of Carg12368-RA vs. Swiss-Prot
Match: sp|O22126|FLA8_ARATH (Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.7e-30
Identity = 100/289 (34.60%), Postives = 147/289 (50.87%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+L + N    A S L  + P S +   L   VLL Y  P  L +IS    L TTL+QTT
Sbjct: 61  TVLVLNN---GAMSALAGKHPLSVIKSALSLLVLLDYYDPQKLHKISKGTTLSTTLYQTT 120

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A  + G VNIT D   G V   S    S  +++    +K +PYN+SI  ++A ++  G
Sbjct: 121 GNAPGNLGFVNIT-DLKGGKVGFGSAASGSKLDSSYTKSVKQIPYNISILEIDAPIIAPG 180

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
              + +   P   L+    L++       A++L++SGV+  +E+     G+T+F P+D A
Sbjct: 181 ---VLTAPAPSASLSNITGLLEKAGCKTFANLLVSSGVLKTYES-AVEKGLTVFAPSDEA 240

Query: 246 F--SDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFT 305
           F    +P   KL      +   +L++H L  Y P GSL++  N +  TLAT   GAG F 
Sbjct: 241 FKAEGVPDLTKLTQA---EVVSLLEYHALAEYKPKGSLKTNKNNIS-TLATN--GAGKFD 300

Query: 306 LNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNN 353
           L  S     V ++TG+  + +  TV D  PV IF V  VLLP E+FG +
Sbjct: 301 LTTSTSGDEVILHTGVAPSRLADTVLDATPVVIFTVDNVLLPAELFGKS 335

[Close]

BLAST of Carg12368-RA vs. Swiss-Prot
Match: sp|Q9FM65|FLA1_ARATH (Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.8e-25
Identity = 93/284 (32.75%), Postives = 141/284 (49.65%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+ AV N+ ++A +   + +  S+L ++L  HVLL Y     L QI     L  TLFQ T
Sbjct: 60  TVCAVDNAAMSALTSKGYTL--STLKNILSLHVLLDYFGTKKLHQIRDGSALAATLFQAT 119

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G A    G VNIT D   G V    P     S+  V + ++ +PYN+SI  ++ +L    
Sbjct: 120 GAAPGTSGFVNIT-DLRGGKVG-FGPDGGDLSSFFVKS-IEEVPYNISIIQISRVLPS-- 179

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
            +  A+ T  P  +N+T  ++  H   V A  LL +    +   +    G+T+F P D A
Sbjct: 180 -ETAAAPTPAPAEMNLT-GIMSAHGCKVFAETLLTNPGASKTYQESLEGGMTVFCPGDDA 239

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
                P  K ++L A KK   L F  + +YY +  L+S   P+  TLAT+  GA  F L 
Sbjct: 240 MKGFLP--KYKNLTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMN-TLATD--GANKFELT 299

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIF 350
           +      V + T I    +  T+ D++P+AI+   +VLLPKE+F
Sbjct: 300 VQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYATDKVLLPKELF 329

[Close]

BLAST of Carg12368-RA vs. Swiss-Prot
Match: sp|Q9SU13|FLA2_ARATH (Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-21
Identity = 90/284 (31.69%), Postives = 140/284 (49.30%), Query Frame = 0


Query: 66  TLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLFQTT 125
           T+LAV NS  A SS L++      + ++L  HVL+ Y     L QI+       ++FQ+T
Sbjct: 62  TVLAVDNS--AMSSILSNGYSLYQIRNILSLHVLVDYFGTKKLHQITDGSTSTASMFQST 121

Query: 126 GRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLVPYG 185
           G AT   G +NIT D   G V+       S   A  +  +   PYN+S+  ++ +L    
Sbjct: 122 GSATGTSGYINIT-DIKGGKVAFGVQDDDSKLTAHYVKSVFEKPYNISVLHISQVLTSPE 181

Query: 186 FDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPTDSA 245
            +   + T  P  L +T  +++       + +L ++G    F+ D    G+T+F P+DSA
Sbjct: 182 AE---APTASPSDLILT-TILEKQGCKAFSDILKSTGADKTFQ-DTVDGGLTVFCPSDSA 241

Query: 246 FSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSFTLN 305
                P  K  S PA+K A+VL +H +  Y  L  L S  N    TLATE  G   F   
Sbjct: 242 VGKFMPKFKSLS-PANKTALVL-YHGMPVYQSLQMLRS-GNGAVNTLATE--GNNKFDFT 301

Query: 306 ISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIF 350
           +      V + T +V A V  T+ DQ+P+ ++ + +VLLP+EI+
Sbjct: 302 VQNDGEDVTLETDVVTAKVMGTLKDQEPLIVYKIDKVLLPREIY 332

[Close]

BLAST of Carg12368-RA vs. TrEMBL
Match: tr|A0A0A0LXD7|A0A0A0LXD7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G507470 PE=4 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 8.4e-171
Identity = 346/403 (85.86%), Postives = 361/403 (89.58%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDI-XXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGT ISHFTP+  L+FLLL       SP+LAL+          XXXXXXXXXXXXXXXX 
Sbjct: 4   MGTPISHFTPLHLLYFLLL-----SSSPILALNFSSLLSSFPDXXXXXXXXXXXXXXXXL 63

Query: 61  XXXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVT 120
                 TLLAVPNSYLAASSDLTHRIP SSLAD+LRYHVLLQYLSPSDLR ISPSGKLVT
Sbjct: 64  NHRTSLTLLAVPNSYLAASSDLTHRIPPSSLADLLRYHVLLQYLSPSDLRHISPSGKLVT 123

Query: 121 TLFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNA 180
           TLFQTTGRATSDFGSVNITR+PLDG+VSVHSPVPFSSSNATVLTLL+NLPYNVSIFAVNA
Sbjct: 124 TLFQTTGRATSDFGSVNITRNPLDGVVSVHSPVPFSSSNATVLTLLQNLPYNVSIFAVNA 183

Query: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLF 240
           LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASML ASGVV+EFEADEGGAGITLF
Sbjct: 184 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 243

Query: 241 VPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300
           VPTD AFSDLP TVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA
Sbjct: 244 VPTDVAFSDLPGTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 303

Query: 301 GSFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKP 360
           G FTLNISRVNGSVGINTGIVQASVTQTVFDQ PVAIFGVSEVLLP+EIFGNNPMMT KP
Sbjct: 304 GRFTLNISRVNGSVGINTGIVQASVTQTVFDQNPVAIFGVSEVLLPREIFGNNPMMTAKP 363

Query: 361 ANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAA 403
            NE + +AQPP+ + AMSP+SNGP LHLSSPPGY EEIRSVAA
Sbjct: 364 RNEIVGNAQPPEGM-AMSPESNGPQLHLSSPPGYGEEIRSVAA 400

[Close]

BLAST of Carg12368-RA vs. TrEMBL
Match: tr|A0A1S4E1I9|A0A1S4E1I9_CUCME (LOW QUALITY PROTEIN: fasciclin-like arabinogalactan protein 4 OS=Cucumis melo OX=3656 GN=LOC103497237 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 6.1e-153
Identity = 321/403 (79.65%), Postives = 335/403 (83.13%), Query Frame = 0


Query: 1   MGTRISHFTPIPSLFFLLLLLSSXXLSPVLALDI-XXXXXXXXXXXXXXXXXXXXXXXXX 60
           MGT ISHFTP+  L+FLLL       SP+LAL+            XXXXXXXXXXXXXX 
Sbjct: 1   MGTPISHFTPLHFLYFLLL-----SSSPILALNFSSLLSSFPDLSXXXXXXXXXXXXXXL 60

Query: 61  XXXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVT 120
                 TLLAVPNSYLAASSDLTHRIP SSLAD+LRYHVLLQYLSPSDLR ISPSGKLVT
Sbjct: 61  NHRTSLTLLAVPNSYLAASSDLTHRIPPSSLADLLRYHVLLQYLSPSDLRHISPSGKLVT 120

Query: 121 TLFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNA 180
           TLFQTTGR         +   P            FSSSNATVLTLL+NLPYNVSIFAVNA
Sbjct: 121 TLFQTTGRXXXXXXXRRLRSLPCS---------XFSSSNATVLTLLQNLPYNVSIFAVNA 180

Query: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLF 240
           LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASML ASGVV+EFEADEGGAGITLF
Sbjct: 181 LLVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLF 240

Query: 241 VPTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300
           VPTD AFSDLP TVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA
Sbjct: 241 VPTDIAFSDLPGTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGA 300

Query: 301 GSFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKP 360
           G FTLNISRVNGSVGINTGIVQASVTQTVFDQ PVAIFGVSEVLLP+EIFGNNPMMT KP
Sbjct: 301 GRFTLNISRVNGSVGINTGIVQASVTQTVFDQNPVAIFGVSEVLLPREIFGNNPMMTAKP 360

Query: 361 ANETMVSAQPPDAVAAMSPQSNGPPLHLSSPPGYREEIRSVAA 403
            NE + +AQPP+ + AMSP+SNGP LHLSSPPGY EEIRSVAA
Sbjct: 361 RNEIVGNAQPPEGM-AMSPESNGPQLHLSSPPGYGEEIRSVAA 388

[Close]

BLAST of Carg12368-RA vs. TrEMBL
Match: tr|A0A2P5EJA5|A0A2P5EJA5_9ROSA (FAS1 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_186260 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.3e-147
Identity = 294/404 (72.77%), Postives = 320/404 (79.21%), Query Frame = 0


Query: 5   ISHFTPIPS-LFFLLLLLSSXXLSP-VLALDI--XXXXXXXXXXXXXXXXXXXXXXXXXX 64
           +SHF P  S L FLLLL SS   +P  LAL+I                            
Sbjct: 8   VSHFAPTMSILVFLLLLSSSITTTPTALALNITDLVSSFPDLSDFTSLLSSSASLAVDLS 67

Query: 65  XXXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTT 124
                TLLAVPN+YL+ASSDLT R+  SS ADVLRYHVLL+YLS SDLR+I PSGKLVTT
Sbjct: 68  RRSSLTLLAVPNTYLSASSDLTRRLSSSSRADVLRYHVLLEYLSVSDLRRIPPSGKLVTT 127

Query: 125 LFQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNAL 184
           L QTTGRAT++FGSVNITRDP  G VSV SP P+S SNATVL L+K LPYNVS+F VN+L
Sbjct: 128 LLQTTGRATNNFGSVNITRDPSTGAVSVRSPAPYSPSNATVLNLIKTLPYNVSVFTVNSL 187

Query: 185 LVPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFV 244
           LVPYGFDLMASETRPPLGLNIT+ALIDGHNFNVAASML ASGVV+EFEADEGGAGITLFV
Sbjct: 188 LVPYGFDLMASETRPPLGLNITKALIDGHNFNVAASMLSASGVVEEFEADEGGAGITLFV 247

Query: 245 PTDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 304
           P D+AF+DLP  V+LQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG
Sbjct: 248 PVDTAFADLPANVRLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 307

Query: 305 SFTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA 364
           SFTLNISRV GSV I+TGIVQASVTQTVFDQ PVAIFGVSEVLLP+EIFG NP+MT KP 
Sbjct: 308 SFTLNISRVKGSVAIDTGIVQASVTQTVFDQNPVAIFGVSEVLLPREIFGKNPIMTAKPG 367

Query: 365 NETMVSAQPPDAVAA--MSPQSNGPPLHLSSPPGYREEIRSVAA 403
              + SAQPPD   +   SP  +GPP HLSSPPG+REEIRS AA
Sbjct: 368 APFVDSAQPPDIALSPEFSPGFDGPPSHLSSPPGFREEIRSEAA 411

[Close]

BLAST of Carg12368-RA vs. TrEMBL
Match: tr|A0A2P5AJJ1|A0A2P5AJJ1_PARAD (FAS1 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_326160 PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 9.7e-143
Identity = 285/403 (70.72%), Postives = 312/403 (77.42%), Query Frame = 0


Query: 5   ISHFTPIPSLFFLLLLLSSXXLSP-VLALDI--XXXXXXXXXXXXXXXXXXXXXXXXXXX 64
           ISHF P  S+   LLL SS   +P  LAL+I                             
Sbjct: 8   ISHFAPTMSILVFLLLSSSITTTPTALALNITDLLSSFPDLSDFTSLLSSSASLPADLSR 67

Query: 65  XXXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTL 124
               TLLAVPN+YL+ASSDLT R+  S  ADVLRYHVLL+YLS SDLR+I  SGKLVTTL
Sbjct: 68  RSSLTLLAVPNTYLSASSDLTRRLSSSRRADVLRYHVLLEYLSVSDLRRIPSSGKLVTTL 127

Query: 125 FQTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALL 184
            QTTGRAT++FGSVNITRDP  G VSV SP P+S SNATVL L+K LPYNVS+F VN+LL
Sbjct: 128 LQTTGRATNNFGSVNITRDPSTGAVSVRSPAPYSPSNATVLNLIKTLPYNVSVFTVNSLL 187

Query: 185 VPYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVP 244
           VPYGFDLMASETRP L LNIT+ LIDGHNFNVAASML ASGVV+EFEADEGGAGITLFVP
Sbjct: 188 VPYGFDLMASETRPLLRLNITKTLIDGHNFNVAASMLSASGVVEEFEADEGGAGITLFVP 247

Query: 245 TDSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGS 304
            D+AF+DLP  V+LQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAG 
Sbjct: 248 VDTAFADLPANVRLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGR 307

Query: 305 FTLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPAN 364
           FTLNISRV GSV I+TGIVQASVTQTVFDQ PVAIFGVSEVLLP+EIFG NP+MT KP  
Sbjct: 308 FTLNISRVKGSVAIDTGIVQASVTQTVFDQNPVAIFGVSEVLLPREIFGKNPIMTAKPGA 367

Query: 365 ETMVSAQPPDAVAA--MSPQSNGPPLHLSSPPGYREEIRSVAA 403
             + SAQPPD   +   SP  +GPP HLSSPPG+REEIRS A+
Sbjct: 368 PFVDSAQPPDIALSPEFSPGFDGPPSHLSSPPGFREEIRSEAS 410

[Close]

BLAST of Carg12368-RA vs. TrEMBL
Match: tr|A5BM05|A5BM05_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006797 PE=4 SV=1)

HSP 1 Score: 500.0 bits (1286), Expect = 5.5e-138
Identity = 276/403 (68.49%), Postives = 315/403 (78.16%), Query Frame = 0


Query: 4   RISHFTPIPSLFFLLLLLSSXXLSPVLALDI-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 63
           RISHF P   ++FLLL  S     P++AL+I                             
Sbjct: 5   RISHFAPTAIVYFLLLSSS----YPIVALNITSLLSTYPDLSDFANLLTATAVDGDLIHR 64

Query: 64  XXXTLLAVPNSYLAASSDLTHRIPQSSLADVLRYHVLLQYLSPSDLRQISPSGKLVTTLF 123
              TLLAVPNS+L  SSDLTHR   SSLADV+RYHVLLQYLS  D+RQI  +GKL+TTL+
Sbjct: 65  SSLTLLAVPNSFL-RSSDLTHRSSASSLADVIRYHVLLQYLSWPDIRQIPAAGKLITTLY 124

Query: 124 QTTGRATSDFGSVNITRDPLDGLVSVHSPVPFSSSNATVLTLLKNLPYNVSIFAVNALLV 183
           QTTGRATS+FGSVNITR+P +G VSVHSP  +S SNAT+L+L+K LPYNVSIF VN+LLV
Sbjct: 125 QTTGRATSNFGSVNITRNPANGAVSVHSPASYSPSNATILSLIKTLPYNVSIFTVNSLLV 184

Query: 184 PYGFDLMASETRPPLGLNITRALIDGHNFNVAASMLLASGVVDEFEADEGGAGITLFVPT 243
           PYGFDLMASE+RPPLGLNIT+ LIDGHNFNVAASML+ASGVV+EFEADE GAGIT+F+PT
Sbjct: 185 PYGFDLMASESRPPLGLNITKTLIDGHNFNVAASMLMASGVVEEFEADEAGAGITMFIPT 244

Query: 244 DSAFSDLPPTVKLQSLPADKKAVVLKFHVLHSYYPLGSLESIVNPVQPTLATEDMGAGSF 303
           D AF+DLP T +LQSLPADKKAVVLKFHVLHSYY LGSLESIVNPVQPTLATE+MGA SF
Sbjct: 245 DDAFADLPTTERLQSLPADKKAVVLKFHVLHSYYTLGSLESIVNPVQPTLATEEMGAESF 304

Query: 304 TLNISRVNGSVGINTGIVQASVTQTVFDQKPVAIFGVSEVLLPKEIFGNNPMMTIKPA-- 363
           TLNISRVNGSV I++GIVQASVTQTVFDQ PVAIFGVS+VLLP+EIFGNNP+ T +P+  
Sbjct: 305 TLNISRVNGSVAIDSGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGNNPISTTRPSPN 364

Query: 364 NETMVSAQPPDAVAA--MSPQSNGPPLHLSSPPGYREEIRSVA 402
           NE   SAQPPD   +   SP S  PP  +SSPPG+ EE+RS A
Sbjct: 365 NEATGSAQPPDISXSPENSPGSYTPPSGMSSPPGFHEELRSEA 402

The following BLAST results are available for this feature:

BLAST of Carg12368-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997926.1	3.3e-195	90.82	fasciclin-like arabinogalactan protein 4 [Cucurbita maxima]	[more]
XP_022949328.1	7.7e-192	89.83	fasciclin-like arabinogalactan protein 4 [Cucurbita moschata] >XP_022949329.1 fa...	[more]
XP_023523051.1	1.3e-191	89.83	fasciclin-like arabinogalactan protein 4 [Cucurbita pepo subsp. pepo]	[more]
XP_004150187.1	1.3e-170	85.86	PREDICTED: fasciclin-like arabinogalactan protein 4 [Cucumis sativus] >KGN65714....	[more]
XP_022965003.1	9.1e-169	81.34	fasciclin-like arabinogalactan protein 4 [Cucurbita moschata]	[more]

BLAST of Carg12368-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46550.1	1.1e-99	58.45	Fasciclin-like arabinogalactan family protein	[more]
AT3G60900.1	2.0e-32	33.80	FASCICLIN-like arabinogalactan-protein 10	[more]
AT2G45470.1	4.8e-31	34.60	FASCICLIN-like arabinogalactan protein 8	[more]
AT5G55730.1	2.1e-26	32.75	FASCICLIN-like arabinogalactan 1	[more]
AT4G12730.1	8.3e-23	31.69	FASCICLIN-like arabinogalactan 2	[more]

BLAST of Carg12368-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SNC3\|FLA4_ARATH	2.0e-98	58.45	Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana OX=3702 GN=FLA4...	[more]
sp\|Q9LZX4\|FLA10_ARATH	3.5e-31	33.80	Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
sp\|O22126\|FLA8_ARATH	8.7e-30	34.60	Fasciclin-like arabinogalactan protein 8 OS=Arabidopsis thaliana OX=3702 GN=FLA8...	[more]
sp\|Q9FM65\|FLA1_ARATH	3.8e-25	32.75	Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1...	[more]
sp\|Q9SU13\|FLA2_ARATH	1.5e-21	31.69	Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2...	[more]

BLAST of Carg12368-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXD7\|A0A0A0LXD7_CUCSA	8.4e-171	85.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G507470 PE=4 SV=1	[more]
tr\|A0A1S4E1I9\|A0A1S4E1I9_CUCME	6.1e-153	79.65	LOW QUALITY PROTEIN: fasciclin-like arabinogalactan protein 4 OS=Cucumis melo OX...	[more]
tr\|A0A2P5EJA5\|A0A2P5EJA5_9ROSA	1.3e-147	72.77	FAS1 domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_186260...	[more]
tr\|A0A2P5AJJ1\|A0A2P5AJJ1_PARAD	9.7e-143	70.72	FAS1 domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_32...	[more]
tr\|A5BM05\|A5BM05_VITVI	5.5e-138	68.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006797 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR033254	Plant_FLA
IPR036378	FAS1_dom_sf
IPR000782	FAS1_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12368	Carg12368	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12368-RA	Carg12368-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12368-RA.CDS.3	Carg12368-RA.CDS.3	CDS
Carg12368-RA.CDS.2	Carg12368-RA.CDS.2	CDS
Carg12368-RA.CDS.1	Carg12368-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12368-RA.exon.3	Carg12368-RA.exon.3	exon
Carg12368-RA.exon.2	Carg12368-RA.exon.2	exon
Carg12368-RA.exon.1	Carg12368-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 237..346 e-value: 3.1E-17 score: 73.3
IPR000782	FAS1 domain	PFAM	PF02469	Fasciclin	coord: 210..345 e-value: 6.9E-17 score: 61.8
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 31..181 score: 9.189
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 198..343 score: 15.868
IPR036378	FAS1 domain superfamily	GENE3D	G3DSA:2.30.180.10		coord: 199..346 e-value: 9.0E-10 score: 40.7
IPR036378	FAS1 domain superfamily	SUPERFAMILY	SSF82153	FAS1 domain	coord: 205..346
IPR036378	FAS1 domain superfamily	SUPERFAMILY	SSF82153	FAS1 domain	coord: 30..183
IPR033254	Fasciclin-like arabinogalactan protein	PANTHER	PTHR32382	FAMILY NOT NAMED	coord: 3..402
None	No IPR available	PANTHER	PTHR32382:SF0	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4	coord: 3..402