Carg12229-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12229-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Exostosin family protein
Location	Cucurbita_argyrosperma_scaffold_054 : 560628 .. 561298 (+)
Sequence length	453

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTGTAAGTGCTCCATTGAAGATATGAAGGAAATCCATGAAACTCTAAAATAACTGCACAGAACAAAATGACTCCTTTGCAGCTTCTCTTTGGAAAAAAAAATCTGCTTAAACCTCGGTGGGATCATGTCAAGGACCTTGAAAATGGACTGCAACTGTGGCAGTGTTCTTGTATATAGCAGACTGGTAAAACAAAACTATGATTATTTGTCAATATTGCAGTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

mRNA sequence

ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

Coding sequence (CDS)

ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

Protein sequence

MQLRVRKVPKRSLWHAKPLKYDITLHSFWYNIVFQIKIFRNPDFRSATSASGCETSGFKSYCPLPRRRRKPFSRTTMEVITRSLGHHQPHPSKAINVFTHWVHPDQLKRDPHSRTVSLRSESDTQAYMISNMAPQHEASYEEQGQCGMGDD

Homology

[Close]

BLAST of Carg12229-RA vs. NCBI nr
Match: XP_004148727.1 (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus] >KGN65348.1 hypothetical protein Csa_1G364960 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]

BLAST of Carg12229-RA vs. NCBI nr
Match: XP_008462761.1 (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]

BLAST of Carg12229-RA vs. NCBI nr
Match: XP_022961026.1 (probable glycosyltransferase At5g03795 [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 629 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 669

[Close]

BLAST of Carg12229-RA vs. NCBI nr
Match: XP_022987636.1 (probable glycosyltransferase At5g03795 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 634 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 674

[Close]

BLAST of Carg12229-RA vs. NCBI nr
Match: XP_023516188.1 (probable glycosyltransferase At5g03795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 629 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 669

[Close]

BLAST of Carg12229-RA vs. TAIR10
Match: AT5G25820.1 (Exostosin family protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYD---ITLHSFWYNIVFQIKI 39
           MQ+RV+KV K  LWHAKP KYD   + LHS WYN VFQI +
Sbjct: 614 MQMRVKKVQKHFLWHAKPEKYDMFHMILHSIWYNRVFQISV 654

[Close]

BLAST of Carg12229-RA vs. TAIR10
Match: AT5G19670.1 (Exostosin family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-07
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQ+ VRK  +  LWHAKP KYD+    LHS WYN VFQ K
Sbjct: 569 MQMAVRKAQRHFLWHAKPEKYDLFHMVLHSIWYNRVFQAK 608

[Close]

BLAST of Carg12229-RA vs. TAIR10
Match: AT4G32790.1 (Exostosin family protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQI 37
           MQ+RV+ V K  LWH+KP ++DI    LHS WYN VFQI
Sbjct: 555 MQMRVKMVQKHFLWHSKPERFDIFHMILHSIWYNRVFQI 593

[Close]

BLAST of Carg12229-RA vs. TrEMBL
Match: tr|A0A1S3CJA3|A0A1S3CJA3_CUCME (probable glycosyltransferase At5g03795 OS=Cucumis melo OX=3656 GN=LOC103501046 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]

BLAST of Carg12229-RA vs. TrEMBL
Match: tr|A0A0A0LU64|A0A0A0LU64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G364960 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]

BLAST of Carg12229-RA vs. TrEMBL
Match: tr|A0A059CN85|A0A059CN85_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01012 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV +  LWHAKP+KYD+   TLHS WYN VFQIK+
Sbjct: 655 MQLRVRKVQRHFLWHAKPVKYDLFYMTLHSIWYNRVFQIKL 695

[Close]

BLAST of Carg12229-RA vs. TrEMBL
Match: tr|A0A022QH56|A0A022QH56_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002540mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQL VRKV K  LWHAKPLKYD+   TLHS WYN VFQIK
Sbjct: 620 MQLNVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIK 659

[Close]

BLAST of Carg12229-RA vs. TrEMBL
Match: tr|F6HGM0|F6HGM0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03370 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQL VRKV K  LWHAKPLKYD+   TLHS WYN VFQ+K
Sbjct: 677 MQLGVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQVK 716

The following BLAST results are available for this feature:

BLAST of Carg12229-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148727.1	4.0e-07	75.61	PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus] >KGN65348.1 ...	[more]
XP_008462761.1	4.0e-07	75.61	PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo]	[more]
XP_022961026.1	4.0e-07	75.61	probable glycosyltransferase At5g03795 [Cucurbita moschata]	[more]
XP_022987636.1	4.0e-07	75.61	probable glycosyltransferase At5g03795 [Cucurbita maxima]	[more]
XP_023516188.1	4.0e-07	75.61	probable glycosyltransferase At5g03795 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12229-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25820.1	3.4e-08	63.41	Exostosin family protein	[more]
AT5G19670.1	6.4e-07	60.00	Exostosin family protein	[more]
AT4G32790.1	2.4e-06	58.97	Exostosin family protein	[more]

BLAST of Carg12229-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12229-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJA3\|A0A1S3CJA3_CUCME	2.7e-07	75.61	probable glycosyltransferase At5g03795 OS=Cucumis melo OX=3656 GN=LOC103501046 P...	[more]
tr\|A0A0A0LU64\|A0A0A0LU64_CUCSA	2.7e-07	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G364960 PE=4 SV=1	[more]
tr\|A0A059CN85\|A0A059CN85_EUCGR	1.3e-06	70.73	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01012 PE=4 SV...	[more]
tr\|A0A022QH56\|A0A022QH56_ERYGU	1.7e-06	75.00	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002540mg PE...	[more]
tr\|F6HGM0\|F6HGM0_VITVI	3.9e-06	72.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03370 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12229	Carg12229	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12229-RA.exon.1	Carg12229-RA.exon.1	exon
Carg12229-RA.exon.2	Carg12229-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12229-RA.CDS.1	Carg12229-RA.CDS.1	CDS
Carg12229-RA.CDS.2	Carg12229-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12229-RA	Carg12229-RA-protein	polypeptide