Carg12229 (gene) Silver-seed gourd

Overview
NameCarg12229
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionExostosin family protein
LocationCucurbita_argyrosperma_scaffold_054 : 560628 .. 561298 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTGTAAGTGCTCCATTGAAGATATGAAGGAAATCCATGAAACTCTAAAATAACTGCACAGAACAAAATGACTCCTTTGCAGCTTCTCTTTGGAAAAAAAAATCTGCTTAAACCTCGGTGGGATCATGTCAAGGACCTTGAAAATGGACTGCAACTGTGGCAGTGTTCTTGTATATAGCAGACTGGTAAAACAAAACTATGATTATTTGTCAATATTGCAGTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

mRNA sequence

ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

Coding sequence (CDS)

ATGCAACTCCGAGTCAGGAAAGTACCTAAGCGCTCCCTTTGGCATGCCAAGCCCTTGAAGTATGACATTACCCTTCATTCATTCTGGTATAACATAGTGTTTCAGATAAAGATATTTAGAAATCCTGATTTCCGTTCAGCAACCTCTGCATCTGGCTGTGAGACTTCAGGTTTCAAATCATACTGCCCTCTACCTCGTCGACGTAGGAAGCCATTTTCCAGGACCACAATGGAAGTTATTACTCGTTCTTTGGGTCATCATCAACCACATCCATCCAAAGCAATAAATGTTTTCACTCACTGGGTCCATCCAGACCAATTGAAGAGAGACCCACATTCAAGAACCGTATCTCTGAGATCGGAATCAGATACTCAGGCATATATGATCTCTAATATGGCACCACAACACGAAGCTTCCTATGAAGAACAGGGGCAATGTGGAATGGGCGATGAT

Protein sequence

MQLRVRKVPKRSLWHAKPLKYDITLHSFWYNIVFQIKIFRNPDFRSATSASGCETSGFKSYCPLPRRRRKPFSRTTMEVITRSLGHHQPHPSKAINVFTHWVHPDQLKRDPHSRTVSLRSESDTQAYMISNMAPQHEASYEEQGQCGMGDD
Homology
[Close]
BLAST of Carg12229 vs. NCBI nr
Match: XP_004148727.1 (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus] >KGN65348.1 hypothetical protein Csa_1G364960 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]
BLAST of Carg12229 vs. NCBI nr
Match: XP_008462761.1 (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]
BLAST of Carg12229 vs. NCBI nr
Match: XP_022961026.1 (probable glycosyltransferase At5g03795 [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 629 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 669

[Close]
BLAST of Carg12229 vs. NCBI nr
Match: XP_022987636.1 (probable glycosyltransferase At5g03795 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 634 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 674

[Close]
BLAST of Carg12229 vs. NCBI nr
Match: XP_023516188.1 (probable glycosyltransferase At5g03795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 629 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 669

[Close]
BLAST of Carg12229 vs. TAIR10
Match: AT5G25820.1 (Exostosin family protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-08
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYD---ITLHSFWYNIVFQIKI 39
           MQ+RV+KV K  LWHAKP KYD   + LHS WYN VFQI +
Sbjct: 614 MQMRVKKVQKHFLWHAKPEKYDMFHMILHSIWYNRVFQISV 654

[Close]
BLAST of Carg12229 vs. TAIR10
Match: AT5G19670.1 (Exostosin family protein)

HSP 1 Score: 51.2 bits (121), Expect = 6.4e-07
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQ+ VRK  +  LWHAKP KYD+    LHS WYN VFQ K
Sbjct: 569 MQMAVRKAQRHFLWHAKPEKYDLFHMVLHSIWYNRVFQAK 608

[Close]
BLAST of Carg12229 vs. TAIR10
Match: AT4G32790.1 (Exostosin family protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.4e-06
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQI 37
           MQ+RV+ V K  LWH+KP ++DI    LHS WYN VFQI
Sbjct: 555 MQMRVKMVQKHFLWHSKPERFDIFHMILHSIWYNRVFQI 593

[Close]
BLAST of Carg12229 vs. TrEMBL
Match: tr|A0A1S3CJA3|A0A1S3CJA3_CUCME (probable glycosyltransferase At5g03795 OS=Cucumis melo OX=3656 GN=LOC103501046 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]
BLAST of Carg12229 vs. TrEMBL
Match: tr|A0A0A0LU64|A0A0A0LU64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G364960 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV K  LWHAKPLKYD+   TLHS WYN VFQIK+
Sbjct: 623 MQLRVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIKL 663

[Close]
BLAST of Carg12229 vs. TrEMBL
Match: tr|A0A059CN85|A0A059CN85_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01012 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIKI 39
           MQLRVRKV +  LWHAKP+KYD+   TLHS WYN VFQIK+
Sbjct: 655 MQLRVRKVQRHFLWHAKPVKYDLFYMTLHSIWYNRVFQIKL 695

[Close]
BLAST of Carg12229 vs. TrEMBL
Match: tr|A0A022QH56|A0A022QH56_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002540mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQL VRKV K  LWHAKPLKYD+   TLHS WYN VFQIK
Sbjct: 620 MQLNVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQIK 659

[Close]
BLAST of Carg12229 vs. TrEMBL
Match: tr|F6HGM0|F6HGM0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03370 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 1   MQLRVRKVPKRSLWHAKPLKYDI---TLHSFWYNIVFQIK 38
           MQL VRKV K  LWHAKPLKYD+   TLHS WYN VFQ+K
Sbjct: 677 MQLGVRKVQKHFLWHAKPLKYDLFHMTLHSIWYNRVFQVK 716

The following BLAST results are available for this feature:
BLAST of Carg12229 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148727.14.0e-0775.61PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus] >KGN65348.1 ... [more]
XP_008462761.14.0e-0775.61PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo][more]
XP_022961026.14.0e-0775.61probable glycosyltransferase At5g03795 [Cucurbita moschata][more]
XP_022987636.14.0e-0775.61probable glycosyltransferase At5g03795 [Cucurbita maxima][more]
XP_023516188.14.0e-0775.61probable glycosyltransferase At5g03795 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg12229 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25820.13.4e-0863.41Exostosin family protein[more]
AT5G19670.16.4e-0760.00Exostosin family protein[more]
AT4G32790.12.4e-0658.97Exostosin family protein[more]
BLAST of Carg12229 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg12229 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CJA3|A0A1S3CJA3_CUCME2.7e-0775.61probable glycosyltransferase At5g03795 OS=Cucumis melo OX=3656 GN=LOC103501046 P... [more]
tr|A0A0A0LU64|A0A0A0LU64_CUCSA2.7e-0775.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G364960 PE=4 SV=1[more]
tr|A0A059CN85|A0A059CN85_EUCGR1.3e-0670.73Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C01012 PE=4 SV... [more]
tr|A0A022QH56|A0A022QH56_ERYGU1.7e-0675.00Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a002540mg PE... [more]
tr|F6HGM0|F6HGM0_VITVI3.9e-0672.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03370 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12229-RACarg12229-RAmRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12229CmaCh10G006580Cucurbita maxima (Rimu)carcmaB0044
Carg12229CmoCh11G006480Cucurbita moschata (Rifu)carcmoB0050
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg12229Cucumber (Chinese Long) v2carcuB0042
Carg12229Cucumber (Chinese Long) v3carcucB0045
Carg12229Bottle gourd (USVL1VR-Ls)carlsiB033
Carg12229Bottle gourd (USVL1VR-Ls)carlsiB037
Carg12229Melon (DHL92) v3.5.1carmeB0039
Carg12229Melon (DHL92) v3.6.1carmedB0038
Carg12229Melon (DHL92) v3.6.1carmedB0040
Carg12229Watermelon (Charleston Gray)carwcgB0037
Carg12229Watermelon (Charleston Gray)carwcgB0040
Carg12229Watermelon (97103) v1carwmB0038
Carg12229Watermelon (97103) v1carwmB0039
Carg12229Watermelon (97103) v2carwmbB0031
Carg12229Watermelon (97103) v2carwmbB0034
Carg12229Watermelon (97103) v2carwmbB0039
Carg12229Wax gourdcarwgoB0038
Carg12229Wax gourdcarwgoB0041
Carg12229Wax gourdcarwgoB0043
Carg12229Silver-seed gourdcarcarB046
Carg12229Silver-seed gourdcarcarB041
Carg12229Silver-seed gourdcarcarB042
Carg12229Silver-seed gourdcarcarB044
Carg12229Silver-seed gourdcarcarB045
Carg12229Silver-seed gourdcarcarB047
Carg12229Cucumber (Gy14) v2carcgybB0041
Carg12229Cucumber (Gy14) v1carcgyB0040
Carg12229Cucurbita maxima (Rimu)carcmaB0047
Carg12229Cucurbita maxima (Rimu)carcmaB0048
Carg12229Cucurbita maxima (Rimu)carcmaB0049
Carg12229Cucurbita moschata (Rifu)carcmoB0047
Carg12229Cucurbita moschata (Rifu)carcmoB0051
Carg12229Cucurbita moschata (Rifu)carcmoB0052
Carg12229Cucurbita pepo (Zucchini)carcpeB0049
Carg12229Cucurbita pepo (Zucchini)carcpeB0053
Carg12229Cucurbita pepo (Zucchini)carcpeB0054
Carg12229Cucurbita pepo (Zucchini)carcpeB0055
Carg12229Wild cucumber (PI 183967)carcpiB0044