Carg12087-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAGTGAAGCTTATAGCTATGGATTCTCTGATTCTGCTGTTGCTGATGCTTTGAGGAACTCTCAGTTAAAATCCCAGTCGCGTTAGTCTTTTCTCGATCTTAATTTACTCATTTTCTGTGGTTTAGGTTTTGTTTTTGGGGGTTTTTGGTTTGAATGAATTCTGTTTGGTTTTGTAGATTTTTATTTTGATTACGAGGAAGTGGATGGGGATGATGATTTGAATTCGGAATATCCTTGCCCGTTTTGTCCTGAGGAATTTGATTTGGTTGAGTTATGCTGCCATATTGATGACGAACATCCCGTAGAAGCCAAGTTTGGAGTAAGAAAATCTCTTAACTTCTTCTATTTTTTAGTAAGAGATTAGAAATATTTCCCTTGATATGTGGTATCAACCAAAAACTTGCTTGCATTTTCTGACCCTCGAGATTTGGGTCAGTTCATAGTTCTTACAGAGTTCTTATTTTGATTGTCTTCTTTGAGTGAGTTTGAACTTCAAGTTCAAGGCATTGTCCTGTTGTTTGTTAACGTTTAGTGCTTTTGATCTTATTGTGCAAGTTTTTCATTTCAAGTTTTTGTTGGAACTTGTTTCATGACTATAAGAAGCCCCTTTCTGATCTATCCTCTTACTCGTTGTTATAGACTTTATCATCATTAACCCACCTACTAATATCAGATGTTGGTACTGCTCTGTTGCTTAATGTATTGTTCTATTGGACTTGACCTGGAAAATTAGATTGCTATGGTTGTCTGTAGCTCGGATAACGTGGTAACGTGGTGGTATTTTCCTTTAGATTTTATTTTTCCTCCCATGGATGTTATACTTGTCTGCTCGTCTTGCCTCCGCTCAAGAATGTTTGTGTATGATTATTATGTCGGTGTCAGCGTTTTAAAGATCTTTTTGGGGAGTAAATTTTTTATTAGGATCGCACAACAACGTACACACTCGATCTAGATGAACACGAAAAACAGGAAAGAAAAAAAGTAAGGAGGAATATTGGCTAAAGGATTTGTATTGATGACTTTAGGCATGTACTTGAAGTCATCAATCTAAACCTTTAGCCAATATTCCTCCTTGCATTTTCTCTCTCTCCTGTTCTTTGTGCTCATCTAGATCGAGTGTGAGCATTGTTGTGCGATCCTAACATTTTCTGCATGCTTTTATGATCTTTCTATACCATCTTTTGAAATTTGTTCGTCTTTTTTGTGGTTTTTTATGCATTTGGTTTCATGCATTTTCAGATATGTCCTATTTGTTCTACAAGCGTGGGAGAGAATATGGTTGGACATATAACGATGCAACATGGAGATATATTTAATATATCCTTTTCTTCATTGTTTCGATATAGTTAAGTTTCCCCAATTTTGTAAAGCTCTCAGATGTTTTTCCTTTGTATGTTGTTCGGGTTCTTGTTTATATCCGAATCCATACGTTCTTTTCCTTAACTTGAGATTACAGTCAACAAAGATTGAAATTTGATAAAGACGATTTCCCTCAAAGTCTTTCTTTCGAGAGGAAAGAGTTACTAGATGATCATGTAAGAACTCTTTCTGGGTTTTCTTCTCTGCATTCCACCTCCAAGATGGCACCTGATCCATTGCTGTCATTTTTATGCAATGCACCTGTCATCAATGAGTCTGAAACTGTTCGGCCCGGGCCTTCAGGTGTAGAAAAAATGGAGGAAAAAGATTTAGACGATACACTGTCGGAAAGGTAAGCACAGAAATATGCTTCTCGATGCCTCTTATATTAAAAGATGATGTGTTTGATCTGATTTGAAACTTACACACTTTGTACCTGCATCTGTTCATCATAATTATGATTTTTTCTGCTTCTTAGGCATGCATTTTGGTTTGTTATTTAAAATGTTTTTTTGTATAAGCTCGGAGATGTCCTGCTTCTCCTACGAGCTTAAATAACCCTGAGTTACTGTTGCGAGTGTCACAATATGTTTAAGGATATTATAAACTTACGCACTTCGTCGATCGTGCAGCTAATGACGAATAGTTCAAAGATATGTCAGGAGTTAGAGGCTTAAATATTTAGTTCCACTCGCTTTCTAAACTCATGGTTCGAGCTACGTTCCAGTTTTATTTTGGTTTCTATTTTCCTTTTAGGGTCATACAGGGTCATTGTAGCTTTGGAGTTATACTGTCATTGAACTGTAAAATGATCCTGTTTCAGTTTCATGCCTTTATATTCGAATCGAGTTGTTTGTGTTGGTCGAGTTATTTTTGCTCTCCTTACTGTCATTTCATTCGTAGCAACTCTTGTAACTTCTGTGATGGAGATGCCTCATATCCTAAAACTCATCCTCTCCAACCTAATGACGTTAAATATGCATATGTAGGGATGTCGGGTTACCTTCTCTACCAGACACGAACCAAGAAGAGAAGACTCGGAGATCGGACTTCGTACGGGGGCTAGTTTTCTCCGTCATCTTAGGCGACAATTTATAA ATGGAAAGTGAAGCTTATAGCTATGGATTCTCTGATTCTGCTGTTGCTGATGCTTTGAGGAACTCTCAGTTAAAATCCCAGTCGCATTTTTATTTTGATTACGAGGAAGTGGATGGGGATGATGATTTGAATTCGGAATATCCTTGCCCGTTTTGTCCTGAGGAATTTGATTTGGTTGAGTTATGCTGCCATATTGATGACGAACATCCCGTAGAAGCCAATCAACAAAGATTGAAATTTGATAAAGACGATTTCCCTCAAAGTCTTTCTTTCGAGAGGAAAGAGTTACTAGATGATCATGTAAGAACTCTTTCTGGGTTTTCTTCTCTGCATTCCACCTCCAAGATGGCACCTGATCCATTGCTGTCATTTTTATGCAATGCACCTGTCATCAATGAGTCTGAAACTGTTCGGCCCGGGCCTTCAGGTGTAGAAAAAATGGAGGAAAAAGATTTAGACGATACACTGTCGGAAAGGGATGTCGGGTTACCTTCTCTACCAGACACGAACCAAGAAGAGAAGACTCGGAGATCGGACTTCGTACGGGGGCTAGTTTTCTCCGTCATCTTAGGCGACAATTTATAA ATGGAAAGTGAAGCTTATAGCTATGGATTCTCTGATTCTGCTGTTGCTGATGCTTTGAGGAACTCTCAGTTAAAATCCCAGTCGCATTTTTATTTTGATTACGAGGAAGTGGATGGGGATGATGATTTGAATTCGGAATATCCTTGCCCGTTTTGTCCTGAGGAATTTGATTTGGTTGAGTTATGCTGCCATATTGATGACGAACATCCCGTAGAAGCCAATCAACAAAGATTGAAATTTGATAAAGACGATTTCCCTCAAAGTCTTTCTTTCGAGAGGAAAGAGTTACTAGATGATCATGTAAGAACTCTTTCTGGGTTTTCTTCTCTGCATTCCACCTCCAAGATGGCACCTGATCCATTGCTGTCATTTTTATGCAATGCACCTGTCATCAATGAGTCTGAAACTGTTCGGCCCGGGCCTTCAGGTGTAGAAAAAATGGAGGAAAAAGATTTAGACGATACACTGTCGGAAAGGGATGTCGGGTTACCTTCTCTACCAGACACGAACCAAGAAGAGAAGACTCGGAGATCGGACTTCGTACGGGGGCTAGTTTTCTCCGTCATCTTAGGCGACAATTTATAA MESEAYSYGFSDSAVADALRNSQLKSQSHFYFDYEEVDGDDDLNSEYPCPFCPEEFDLVELCCHIDDEHPVEANQQRLKFDKDDFPQSLSFERKELLDDHVRTLSGFSSLHSTSKMAPDPLLSFLCNAPVINESETVRPGPSGVEKMEEKDLDDTLSERDVGLPSLPDTNQEEKTRRSDFVRGLVFSVILGDNL
BLAST of Carg12087-RA vs. NCBI nr
Match: XP_023513520.1 (protein DEHYDRATION-INDUCED 19-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 374.4 bits (960), Expect = 2.3e-100 Identity = 190/223 (85.20%), Postives = 193/223 (86.55%), Query Frame = 0
BLAST of Carg12087-RA vs. NCBI nr
Match: XP_022959753.1 (protein DEHYDRATION-INDUCED 19-like [Cucurbita moschata]) HSP 1 Score: 374.0 bits (959), Expect = 3.1e-100 Identity = 192/223 (86.10%), Postives = 193/223 (86.55%), Query Frame = 0
BLAST of Carg12087-RA vs. NCBI nr
Match: XP_023004648.1 (protein DEHYDRATION-INDUCED 19-like [Cucurbita maxima]) HSP 1 Score: 363.6 bits (932), Expect = 4.1e-97 Identity = 187/223 (83.86%), Postives = 190/223 (85.20%), Query Frame = 0
BLAST of Carg12087-RA vs. NCBI nr
Match: XP_008451522.1 (PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 4-like [Cucumis melo]) HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82 Identity = 165/223 (73.99%), Postives = 176/223 (78.92%), Query Frame = 0
BLAST of Carg12087-RA vs. NCBI nr
Match: XP_022143934.1 (protein DEHYDRATION-INDUCED 19-like [Momordica charantia]) HSP 1 Score: 291.6 bits (745), Expect = 2.0e-75 Identity = 155/224 (69.20%), Postives = 172/224 (76.79%), Query Frame = 0
BLAST of Carg12087-RA vs. TAIR10
Match: AT3G06760.2 (Drought-responsive family protein) HSP 1 Score: 95.9 bits (237), Expect = 2.9e-20 Identity = 67/222 (30.18%), Postives = 108/222 (48.65%), Query Frame = 0
BLAST of Carg12087-RA vs. TAIR10
Match: AT1G56280.1 (drought-induced 19) HSP 1 Score: 94.4 bits (233), Expect = 8.5e-20 Identity = 62/195 (31.79%), Postives = 101/195 (51.79%), Query Frame = 0
BLAST of Carg12087-RA vs. TAIR10
Match: AT4G02200.3 (Drought-responsive family protein) HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19 Identity = 67/190 (35.26%), Postives = 92/190 (48.42%), Query Frame = 0
BLAST of Carg12087-RA vs. TAIR10
Match: AT5G26990.1 (Drought-responsive family protein) HSP 1 Score: 92.0 bits (227), Expect = 4.2e-19 Identity = 67/228 (29.39%), Postives = 112/228 (49.12%), Query Frame = 0
BLAST of Carg12087-RA vs. TAIR10
Match: AT3G05700.1 (Drought-responsive family protein) HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17 Identity = 68/229 (29.69%), Postives = 108/229 (47.16%), Query Frame = 0
BLAST of Carg12087-RA vs. Swiss-Prot
Match: sp|Q8VXU6|DI194_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=DI19-4 PE=1 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.5e-21 Identity = 69/212 (32.55%), Postives = 110/212 (51.89%), Query Frame = 0
BLAST of Carg12087-RA vs. Swiss-Prot
Match: sp|Q39083|DI191_ARATH (Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana OX=3702 GN=DI19-1 PE=1 SV=2) HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18 Identity = 63/201 (31.34%), Postives = 102/201 (50.75%), Query Frame = 0
BLAST of Carg12087-RA vs. Swiss-Prot
Match: sp|O04259|DI195_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=DI19-5 PE=1 SV=2) HSP 1 Score: 93.6 bits (231), Expect = 2.6e-18 Identity = 65/178 (36.52%), Postives = 93/178 (52.25%), Query Frame = 0
BLAST of Carg12087-RA vs. Swiss-Prot
Match: sp|Q6NM26|DI196_ARATH (Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=DI19-6 PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 7.6e-18 Identity = 67/228 (29.39%), Postives = 112/228 (49.12%), Query Frame = 0
BLAST of Carg12087-RA vs. Swiss-Prot
Match: sp|Q5W794|DI192_ORYSJ (Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DI19-2 PE=2 SV=2) HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16 Identity = 65/210 (30.95%), Postives = 99/210 (47.14%), Query Frame = 0
BLAST of Carg12087-RA vs. TrEMBL
Match: tr|A0A1S3BR26|A0A1S3BR26_CUCME (protein DEHYDRATION-INDUCED 19 homolog 4-like OS=Cucumis melo OX=3656 GN=LOC103492783 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 5.5e-82 Identity = 165/223 (73.99%), Postives = 176/223 (78.92%), Query Frame = 0
BLAST of Carg12087-RA vs. TrEMBL
Match: tr|A0A2I4EZH7|A0A2I4EZH7_9ROSI (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108994150 PE=4 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 2.3e-35 Identity = 95/224 (42.41%), Postives = 129/224 (57.59%), Query Frame = 0
BLAST of Carg12087-RA vs. TrEMBL
Match: tr|A0A2I4EZH1|A0A2I4EZH1_9ROSI (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108994150 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 8.7e-35 Identity = 94/224 (41.96%), Postives = 128/224 (57.14%), Query Frame = 0
BLAST of Carg12087-RA vs. TrEMBL
Match: tr|A0A2I4EZH9|A0A2I4EZH9_9ROSI (protein DEHYDRATION-INDUCED 19 homolog 4-like isoform X3 OS=Juglans regia OX=51240 GN=LOC108994150 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34 Identity = 95/224 (42.41%), Postives = 129/224 (57.59%), Query Frame = 0
BLAST of Carg12087-RA vs. TrEMBL
Match: tr|W9SA28|W9SA28_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007471 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.4e-32 Identity = 92/200 (46.00%), Postives = 124/200 (62.00%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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