Carg11750-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11750-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone acetyltransferase HPA2 and related acetyltransferase
Location	Cucurbita_argyrosperma_scaffold_035 : 1254961 .. 1256198 (-)
Sequence length	925

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTACAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCGTTCAACAGAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGGTAATCGTTAGGTTTCCGAGATTCTTCCGCATTTCGTTTGTCTTCAATTTCTGAAATCCGGCTTGATGTACATTGTTCTTCTAATTTAGGTATGAATTGATCGATACATCAGGGGTTAGGTTTTTCAAAATTATCGATGTCCATGGAAATCTAGTGAAATTGTATGTATGTATTTTTCGAAGTCGAGATGTTTATGTTTAATCACGAAATTGATCCTAATTTGTTGTGCTTCGTTGGTTTTCCCTATTTTGTTCTGGAAATTTTGGGATTGTGGAAGTGAAGCTCACTGGTTTTATGATCGTTTCAATGCCAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACCTGTTTTCATTTTGCATTATTCACCCTGCTTTGCAATATTGCATTATAAATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAATGTCTAACAACTTGAATTATGCACTGCTCATTGGCTCGGATACTTTATCATGGAAACTTCGATCATCTTGAGGCCTAATAGATTACAAAAAAAAGAAGATGCTACATGTGAGATCCCACATCGGTTAAGGAGGAGAACAAAGCTTCACTCCCTAGCAGACGGTTTTAAAAACCTTGAGAGAAACTCGAAAGGGAAAGTTCAAAGAGGACAATATCGGCTAGCAGTGGGCTTGAGTTATTACAAATGATATTAGAGTTAGACACTAGAAA

mRNA sequence

AGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGCAATTCGCCAAATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTACAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCGTTCAACAGAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAAGCTACCTGTTTTCATTTTGCATTATTCACCCTGCTTTGCAATATTGCATTATAAATAAAGGGCGTGGATCCAAAACTACAACCTTAGTTAGGAATAGGGGCATAAACACTAATGTCTAACAACTTGAATTATGCACTGCTCATTGGCTCGGATACTTTATCATGGAAACTTCGATCATCTTGAGGCCTAATAGATTACAAAAAAAAGAAGATGCTACATGTGAGATCCCACATCGGTTAAGGAGGAGAACAAAGCTTCACTCCCTAGCAGACGGTTTTAAAAACCTTGAGAGAAACTCGAAAGGGAAAGTTCAAAGAGGACAATATCGGCTAGCAGTGGGCTTGAGTTATTACAAATGATATTAGAGTTAGACACTAGAAA

Coding sequence (CDS)

ATGTTAGGCACTGTGAATCTAGTTATGGGCTCTTCTACAGCCGCCATGCTTACTTCAACGCAGTGTACTGCTATGAAGTCTCTTGCGAGTTTCAGGATTGGTCACCATAGCCACTGCCGACCACTTTCACTGCCTTCGGGATTACCGTCTGCTTCTGGTTTTAGCTCCTGCTTCTTCGCTTCAAGAGGTTCTTCGCCGTTCAACAGAGCAATCGCCGCCGTTAACGATCAAATAGTGTCCTCTGATTCGGCAGACGAGCAAGAATCGAACAAGTACTATTTTGTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAGGGAGCTTCTCTTCGAGCGGCTTCGCTACTATGCCGAGCGTAGCAAGGAGCAGGACTTTTGGTTGGTGATTGAGCCTAAATTCTTGGAAAGGTTTCCTAATATCACCAAGAGATTGCAGAGACCTGCGGTTGCTCTTGTTTCAACCAATAGTACCTGGATCACGTAA

Protein sequence

MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFASRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT

Homology

[Close]

BLAST of Carg11750-RA vs. NCBI nr
Match: XP_022947359.1 (uncharacterized protein LOC111451246 [Cucurbita moschata])

HSP 1 Score: 313.5 bits (802), Expect = 4.1e-82
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSS+AAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTVNLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSPFN AIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSPFNTAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT
Sbjct: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 164

[Close]

BLAST of Carg11750-RA vs. NCBI nr
Match: XP_023007237.1 (uncharacterized protein LOC111499783 [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 6.0e-73
Identity = 150/164 (91.46%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSS+AAMLTSTQCTAMKSLASFRIGHHSHCR LSLPSGLPSASGFSSCFFA
Sbjct: 1   MLGTANLVMGSSSAAMLTSTQCTAMKSLASFRIGHHSHCRALSLPSGLPSASGFSSCFFA 60

Query: 61  SRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYY 120
           SRGSSP     AAVNDQ+VSS SA EQESNKY+FVVANAKFMLDEEEHFRELLFERLRYY
Sbjct: 61  SRGSSP-----AAVNDQLVSSYSAGEQESNKYHFVVANAKFMLDEEEHFRELLFERLRYY 120

Query: 121 AERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           A R+KEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT
Sbjct: 121 AARNKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 159

[Close]

BLAST of Carg11750-RA vs. NCBI nr
Match: XP_022149576.1 (uncharacterized protein LOC111017973 [Momordica charantia])

HSP 1 Score: 247.3 bits (630), Expect = 3.6e-62
Identity = 132/168 (78.57%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSS+AAM+T  Q  A+KSLAS R  HH+HCR LSLP G  +ASG +SCF  
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 61  SRG---SSPFNRAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           SRG   SSPF+ AIAAVN +Q+VSSD AD+QE+NKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           LRYY ER+KEQDFWLVIEPKFLE+FPNITKRLQRPAVALVSTNSTWIT
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWIT 168

[Close]

BLAST of Carg11750-RA vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSS+AAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG S+ F +
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 61  SRGSS---PFNRAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
            RGSS    FN AIAAVN DQIVSSDSAD++ESNKYYF+VANAKFMLDEEEHF+ELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           LR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWIT
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWIT 168

[Close]

BLAST of Carg11750-RA vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima])

HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61
Identity = 133/169 (78.70%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTVNLVMGSS+AAM T TQC A+KSLAS +IG H+HCR  SLP GL SASG SS F +
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 61  SRGSS----PFNRAIAAVN-DQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFE 120
            RGSS     F  A+AAVN DQIVSSDSAD++ESNKYYF+VANAKFMLDEEEHF+ELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 121 RLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           RLR Y ER+KEQDFWLVIEPKFL++FPNITKRLQRPAVALVSTNSTWIT
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWIT 169

[Close]

BLAST of Carg11750-RA vs. TAIR10
Match: AT5G58250.1 (unknown protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-30
Identity = 83/159 (52.20%), Postives = 98/159 (61.64%), Query Frame = 0


Query: 8   VMGSSTAAM-LTSTQCTAMKSLASFRIGHHSHCRPLSLPS-GLPSASGFSSCFFASRGSS 67
           V G+ T A+  T+  C     L S      +    LS PS  LPS          S  SS
Sbjct: 4   VTGALTVAVPPTAAACRTKPFLISSSFPKQTKKLHLSSPSLSLPS----------SHFSS 63

Query: 68  PFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERLRYYAERSK 127
            F  A  ++  Q     S ++ ES KY+F+VANAKFMLDEEEHF+E LFERLRY+ ER  
Sbjct: 64  SFKTAATSIEQQ----SSVNKGESTKYHFLVANAKFMLDEEEHFQEQLFERLRYFGEREL 123

Query: 128 EQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
            QDFWLVIEPKFL+ FP IT+RL+RPAVALVSTN TWIT
Sbjct: 124 VQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWIT 148

[Close]

BLAST of Carg11750-RA vs. Swiss-Prot
Match: sp|P72777|YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRP 151
           YY+ +A+ KF+L EEE F E+L ER R Y E++KE DFW VI+P FL        + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 152 A--VALVSTNSTWI 164
              VA+VSTN ++I
Sbjct: 91  EKNVAIVSTNKSFI 103

[Close]

BLAST of Carg11750-RA vs. Swiss-Prot
Match: sp|P51204|YCF54_PORPU (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLE-----RFPNITK 151
           YYF +A+  F+L EE    E+  ER+ YY   +KE DFWL+  PKFL      +F N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 152 RLQRPAVALVSTNSTWI 164
            +   A+A++STNS +I
Sbjct: 64  -VPNEAIAIISTNSIFI 76

[Close]

BLAST of Carg11750-RA vs. Swiss-Prot
Match: sp|Q1XDT3|YCF54_PYRYE (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.6e-06
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 92  YYFVVANAKFMLDEEEHFRELLFERLRYYAERSKEQDFWLVIEPKFLERFPNITKR--LQ 151
           YYF +A+  F+L  +E   E+  ER+ YY   +K  DFWL+  P FLE+   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 152 RPAVALVSTNSTWI 164
           + AVA++STN  +I
Sbjct: 64  KDAVAIISTNPIFI 76

[Close]

BLAST of Carg11750-RA vs. TrEMBL
Match: tr|A0A0A0KB63|A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-52
Identity = 120/167 (71.86%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGTV+LVMGSS+AA+ TST   A+KSL + RIGHH+H   LS P  LPS S F+S F +
Sbjct: 1   MLGTVSLVMGSSSAAVATSTHFPALKSLPTSRIGHHNHFPTLSFPFVLPSTSIFTSSFLS 60

Query: 61  ---SRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERL 120
              S  SSPFN AIAAVN     SDSAD+QESNKYYF+VANAKFMLDEEEHF+ELLFERL
Sbjct: 61  SPLSSLSSPFNTAIAAVN-----SDSADKQESNKYYFLVANAKFMLDEEEHFKELLFERL 120

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           R ++ER+KEQ+FWLVIEPKFL++FPNITKRL+RPAVALVST+STWIT
Sbjct: 121 RNFSERNKEQNFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWIT 162

[Close]

BLAST of Carg11750-RA vs. TrEMBL
Match: tr|A0A1S3C2E4|A0A1S3C2E4_CUCME (uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 6.6e-52
Identity = 121/167 (72.46%), Postives = 135/167 (80.84%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFRIGHHSHCRPLSLPSGLPSASGFSSCFFA 60
           MLGT NLVMGSS+AA+ TST   A+KSL +  IGHH+     SLP  LPS S FSSCF +
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 61  ---SRGSSPFNRAIAAVNDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFERL 120
              S  SSPFN AIAAVN     SDSAD+QES KYYF+VANAKFMLDEEEHF+ELLFERL
Sbjct: 61  SPLSSLSSPFNTAIAAVN-----SDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERL 120

Query: 121 RYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWIT 165
           R Y ER+KEQDFWLVIEPKFL++FPNITKRL+RPAVALVST+STWIT
Sbjct: 121 RNYGERNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWIT 162

[Close]

BLAST of Carg11750-RA vs. TrEMBL
Match: tr|A0A1S3VH14|A0A1S3VH14_VIGRR (uncharacterized protein LOC106775053 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775053 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 94/171 (54.97%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTS----TQCTAMKSLASFR---IGHHSHCRPLSLPSGLPSASG 60
           MLG   L +GSSTA +  +       T + S+   R   + + +H   +SL S    +  
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASVNGHRRHSVSNRTHSSAMSLVSPTNKSFT 60

Query: 61  FSSCFFASRGSSPFNRAIAAV-NDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFREL 120
           F S F  S  S PF  A+A+V +DQ+ SSD   + E+NKYYFVVANAKFMLDEEEHF+E 
Sbjct: 61  FLSSFKESASSRPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQ 120

Query: 121 LFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWI 164
           LFER+R + ER++EQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN TWI
Sbjct: 121 LFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWI 171

[Close]

BLAST of Carg11750-RA vs. TrEMBL
Match: tr|V7BLT3|V7BLT3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G082200g PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-36
Identity = 92/167 (55.09%), Postives = 112/167 (67.07%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTSTQCTAMKSLASFR---IGHHSHCRPLSLPSGLPSASGFSSC 60
           MLG   L +GSST  +        + S    R   +   SH  P+SL S    +  F S 
Sbjct: 2   MLGMATLTLGSSTTMVAQQQHAATLASANGHRRHSVSSRSHSFPMSLVSPTHQSFTFLSS 61

Query: 61  FFASRGSSPFNRAIAAV-NDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFRELLFER 120
           F     + PF  A+A+V +DQ+ SSD   + E+NKYYFVVANAKFMLDEEEHF+E LFER
Sbjct: 62  FKEPAHARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQLFER 121

Query: 121 LRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWI 164
           LR + ER++EQDFWLVIEPKFL++FPNIT RL+RPAVALVSTN TWI
Sbjct: 122 LRLFGERNQEQDFWLVIEPKFLDKFPNITNRLKRPAVALVSTNGTWI 168

[Close]

BLAST of Carg11750-RA vs. TrEMBL
Match: tr|A0A0L9VCG0|A0A0L9VCG0_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36
Identity = 93/171 (54.39%), Postives = 118/171 (69.01%), Query Frame = 0


Query: 1   MLGTVNLVMGSSTAAMLTS----TQCTAMKSLASFR---IGHHSHCRPLSLPSGLPSASG 60
           MLG   L +GSSTA +  +       T + S    R   + + ++  P+SL S    +  
Sbjct: 1   MLGMATLTLGSSTAMVAQNHAQQHHATTLASANGHRRHSVSNRTYSSPMSLVSPTNKSFT 60

Query: 61  FSSCFFASRGSSPFNRAIAAV-NDQIVSSDSADEQESNKYYFVVANAKFMLDEEEHFREL 120
           F S F  S  + PF  A+A+V +DQ+ SSD   + E+NKYYFVVANAKFMLDEEEHF+E 
Sbjct: 61  FLSSFKESPRARPFTTAVASVDSDQLNSSDPPTKNEANKYYFVVANAKFMLDEEEHFQEQ 120

Query: 121 LFERLRYYAERSKEQDFWLVIEPKFLERFPNITKRLQRPAVALVSTNSTWI 164
           LFER+R + ER++EQDFWLVIEPKFL++FPNITKRL+RPAVALVSTN TWI
Sbjct: 121 LFERIRLFGERNQEQDFWLVIEPKFLDKFPNITKRLKRPAVALVSTNGTWI 171

The following BLAST results are available for this feature:

BLAST of Carg11750-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947359.1	4.1e-82	98.78	uncharacterized protein LOC111451246 [Cucurbita moschata]	[more]
XP_023007237.1	6.0e-73	91.46	uncharacterized protein LOC111499783 [Cucurbita maxima]	[more]
XP_022149576.1	3.6e-62	78.57	uncharacterized protein LOC111017973 [Momordica charantia]	[more]
XP_022944632.1	1.8e-61	79.76	uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 unchar...	[more]
XP_022986936.1	4.0e-61	78.70	uncharacterized protein LOC111484525 [Cucurbita maxima]	[more]

BLAST of Carg11750-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58250.1	2.6e-30	52.20	unknown protein	[more]

BLAST of Carg11750-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P72777\|YC54L_SYNY3	3.5e-08	47.30	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
sp\|P51204\|YCF54_PORPU	2.3e-07	41.56	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
sp\|Q1XDT3\|YCF54_PYRYE	9.6e-06	39.19	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of Carg11750-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KB63\|A0A0A0KB63_CUCSA	1.3e-52	71.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133820 PE=4 SV=1	[more]
tr\|A0A1S3C2E4\|A0A1S3C2E4_CUCME	6.6e-52	72.46	uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=...	[more]
tr\|A0A1S3VH14\|A0A1S3VH14_VIGRR	1.0e-36	54.97	uncharacterized protein LOC106775053 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|V7BLT3\|V7BLT3_PHAVU	1.7e-36	55.09	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G082200g PE=4 ...	[more]
tr\|A0A0L9VCG0\|A0A0L9VCG0_PHAAN	5.1e-36	54.39	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g141000 PE...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019616	Uncharacterised_Ycf54
IPR038409	Ycf54-like_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11750	Carg11750	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11750-RA	Carg11750-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11750-RA.three_prime_UTR.1	Carg11750-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11750-RA.CDS.2	Carg11750-RA.CDS.2	CDS
Carg11750-RA.CDS.1	Carg11750-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11750-RA.five_prime_UTR.1	Carg11750-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11750-RA.exon.2	Carg11750-RA.exon.2	exon
Carg11750-RA.exon.1	Carg11750-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038409	Ycf54-like superfamily	GENE3D	G3DSA:3.30.70.1860		coord: 87..164 e-value: 2.6E-28 score: 100.3
IPR019616	Uncharacterised protein family Ycf54	PFAM	PF10674	Ycf54	coord: 91..164 e-value: 2.4E-27 score: 95.0
IPR019616	Uncharacterised protein family Ycf54	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 12..164
None	No IPR available	PANTHER	PTHR35319:SF2	SUBFAMILY NOT NAMED	coord: 12..164