Carg11604-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTTCTTCCACAGTTCAAAAACTGCAGGCAAGAAAATAAAATCCGCGAACTTCGGCGACTGTGGAGGGTTTGCTTTTTGTTGATTCGTTTCGGGACTGGTTTCGTGAAGGCTCTCTCATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGGTGTGTGGTTCTGTTCTTAATTGTTTCTGATGCTTTGTTTTTTTGTTTTTTTTTTTTTCAAATAGTCTTACGAATTTACCTAATGCTTTTGAGGAATGTAGCTTAGTAGATTTTGATGATTGAACTTCCTCCGTCATGGTGTAGAAAGCAAAAGATTGAACTAAATATTCACTATGAAAGAGCAATGCCAACTTGTTGAATAGAATCTTCTTTAAAGAAGAGATCAGATTTCATTGATGAATGAAATAAAGTCACATCACCCACGATTTTGTGCACTATAATTTCTAATAGCCTCATTAACAACGAGAAATTTGTCAAGAACTTGCTTTCCCTCCACAAAATCTCTCAGGTTATTGGATATGCTTAATGGAAAAAATTGTTTCCATCTCCTTCTCTGATCCGCTCACTTAGAACTTTTTCTTGAACTAACCTTCTACAGTTTGACAAGAACACCAACGTTCTTCCATGAATTCTTTTAGCTCTACTGTGTTTTTGCTTACCTTGAGAACAGAAACATAAAATCTAAACAACTACAAGAAAAGTTACTTTCTATTCCGGAAATTTTTGTATTGATTAATCCATCAATAGGGGCCTTCATACAAAAGAAAAATTATCCTTCATTTTCTATGACATCTTGTGATCTTGGTGGAGAGGTAGAAGGGACAGGTCAACATGGACTGGAATTGAAATTTGTACTCACAAGCAGTGTTCTTCTGAGTAACTGTACTCTGAATTTGTTATCATCTTAGAAATTTATTCTTCTTTCCTTAATATTTTGATATGCAGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGGTAATTGGAATTTTTGGATATTTCCCCCCAACCCTGTGGGAAATGTGGCTTATTATCTCTGTTTATGAACAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTATCATTTCCAGACTGCTACCTAAAATGCTTAGAATTTGTGTGAATTAGCCCATCTGAATTTCTTTTTGAGCCCTTAGACTCCTTTATCCGTATTATCAATCAAGTGTATGTTTGATTTAGATGGCTTAATGTATTGATGCTCGTAATGAAAATACTTCTTGATGCAGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGATACAACTACCATTGTTTATCCCGTTTGAGAAAGATTGTTCGGTTGTCTCATCTTTGGGTGTTTGGCTATTTGTTCCATCTCTTGCTATGATATGTTTTCAGGCGAATTACAGACAGCATTAATGAAGAGAGAATCTAGCTTCTTGGATGTATTAATTTTTTTCCCAAATTTTTCTTTATGTTGAAAGATGCATCAGATCATTTGTTACTCATGAATTATGTTAGTCATTACTTTAACCTGAGAATATTTTTGCATAAGGTCGAGTATTTTAGATTGACAAGATTTCCGAATGTTCTAATTAGGTGGTGGAACGACGGATGGAAGCATGTTTCCTGAAGTTGACAGCACGTGGAAAGTATGCATTGACCTCCTTTTTTGGCGTTTAATTGTAGTTGTTTGCTTCATACTCTTTACTGTCATTGCTCCCGATGACTTTATATATTCAATTATTTCTTCTGAGTCTTAAAAGAAGTAGATAACATAACTTTGTGAAAAGTAGAAGGTAAGAGTCACTGTTCTAATCTACCATGTAAATAATAAAGAGCTTAGACGGAATTGGTTCAAGTCATGGTGACCACCTACCTAGAATTTAATATCCTACGAGTTGAGAATAGTCTAGGTGTGTGCAAGCTGGTCAAAGACACTCACGGATTAGAAAAGATCACTGTTTTGGTAAGAGCCTTTATTTCAAAAAGAGCTTGAACCTTTCAGTTTCAACGACTCGGGTAATATTAGCAAAAAGCATGAGGATAAGTTCACTGGTCAAATATTTCATTTTCATGGGTCTTGGTTTGTTTTCTCATTTATGGTTGTGGTTCATTTTTCTTGCTCATGAAAATCGCTGTCGGACTGATGATCAAAACACTTATATGGCTTTGAATTCGAGTTATGGTTGATCTATTATTTCAACTCCTTCATATGGTACTAGTTTGTAGAGGACATGAAATGAAAATCTTCTGCACAAATGGTTTCTCTAATTCTAAATCATCATCCTTGTAGACATTTAATGAGGTACAAAGTCTTCTAAGTAAAACCAACGGAAAGGTGGTCGGCGATTTGATGACACCGGTGCCTCTTGTCGTTAGAGAAAATAGTGATCTTGAGGACGCTGCTAGGTTCAAACATGCTTTTTTCCTTTTTCTTTATAGTATCATATCATTTCCTTAACTTTTTCGTTTTGAACCACTTCTATTTTCTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGCCTTCCAGTGGTAGATGCGGATGGAAAGCTGGTAAGAGATATCTATCTAGTCCACTCCTCATCTGAATTATTGGTTGTTTTTGCCATCAAAATGATGAAACCTTTCATGAAGGTTGGGATTATCACAAGAGGCAATGTGGTAAGAGCT ATCTTCTTCCACAGTTCAAAAACTGCAGGCAAGAAAATAAAATCCGCGAACTTCGGCGACTGTGGAGGGTTTGCTTTTTGTTGATTCGTTTCGGGACTGGTTTCGTGAAGGCTCTCTCATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGATACAACTACCATTGTTTATCCCGTTTGAGAAAGATTGTTCGGTTGTCTCATCTTTGGGTGTTTGGCTATTTGTTCCATCTCTTGCTATGATATGTTTTCAGGCGAATTACAGACAGCATTAATGAAGAGAGAATCTAGCTTCTTGGATGTATTAATTTTTTTCCCAAATTTTTCTTTATGTTGAAAGATGCATCAGATCATTTGTTACTCATGAATTATGTGGTGGAACGACGGATGGAAGCATGTTTCCTGAAGTTGACAGCACGTGGAAAACATTTAATGAGGTACAAAGTCTTCTAAGTAAAACCAACGGAAAGGTGGTCGGCGATTTGATGACACCGGTGCCTCTTGTCGTTAGAGAAAATAGTGATCTTGAGGACGCTGCTAGATTATTGCTTCAGACAAAGTATCGCCGCCTTCCAGTGGTAGATGCGGATGGAAAGCTGGTTGGGATTATCACAAGAGGCAATGTGGTAAGAGCT ATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGA MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISGISELSCYC
BLAST of Carg11604-RA vs. NCBI nr
Match: XP_022948196.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 268.5 bits (685), Expect = 1.4e-68 Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0
BLAST of Carg11604-RA vs. NCBI nr
Match: XP_023532068.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 264.6 bits (675), Expect = 2.0e-67 Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg11604-RA vs. NCBI nr
Match: XP_023007339.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66 Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0
BLAST of Carg11604-RA vs. NCBI nr
Match: XP_004139474.1 (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus] >KGN64903.1 hypothetical protein Csa_1G152500 [Cucumis sativus]) HSP 1 Score: 229.2 bits (583), Expect = 9.4e-57 Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0
BLAST of Carg11604-RA vs. NCBI nr
Match: XP_022986137.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56 Identity = 119/142 (83.80%), Postives = 129/142 (90.85%), Query Frame = 0
BLAST of Carg11604-RA vs. TAIR10
Match: AT4G36910.1 (Cystathionine beta-synthase (CBS) family protein) HSP 1 Score: 131.7 bits (330), Expect = 3.7e-31 Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 0
BLAST of Carg11604-RA vs. TAIR10
Match: AT4G34120.1 (Cystathionine beta-synthase (CBS) family protein) HSP 1 Score: 117.1 bits (292), Expect = 9.4e-27 Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 0
BLAST of Carg11604-RA vs. Swiss-Prot
Match: sp|O23193|CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX1 PE=1 SV=2) HSP 1 Score: 131.7 bits (330), Expect = 6.7e-30 Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 0
BLAST of Carg11604-RA vs. Swiss-Prot
Match: sp|Q9C5D0|CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX2 PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25 Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 0
BLAST of Carg11604-RA vs. Swiss-Prot
Match: sp|O67820|IMDH_AQUAE (Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=guaB PE=3 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 6.3e-04 Identity = 19/40 (47.50%), Postives = 32/40 (80.00%), Query Frame = 0
BLAST of Carg11604-RA vs. Swiss-Prot
Match: sp|P42851|IMDH_PYRFU (Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=guaB PE=3 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.2e-04 Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of Carg11604-RA vs. TrEMBL
Match: tr|A0A0A0LSY7|A0A0A0LSY7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G152500 PE=4 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 6.2e-57 Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0
BLAST of Carg11604-RA vs. TrEMBL
Match: tr|A0A1S3CFF0|A0A1S3CFF0_CUCME (CBS domain-containing protein CBSX1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500318 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54 Identity = 120/142 (84.51%), Postives = 126/142 (88.73%), Query Frame = 0
BLAST of Carg11604-RA vs. TrEMBL
Match: tr|A5BZA6|A5BZA6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021555 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35 Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 0
BLAST of Carg11604-RA vs. TrEMBL
Match: tr|F6H4H6|F6H4H6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g00200 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 6.7e-35 Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0
BLAST of Carg11604-RA vs. TrEMBL
Match: tr|A0A2P4ISQ0|A0A2P4ISQ0_QUESU (Cbs domain-containing protein cbsx1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_12746 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32 Identity = 84/133 (63.16%), Postives = 95/133 (71.43%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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