Carg11604 (gene) Silver-seed gourd

Overview
NameCarg11604
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCBS domain-containing protein CBSX1, chloroplastic-like
LocationCucurbita_argyrosperma_scaffold_035 : 3413 .. 6391 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTCTTCCACAGTTCAAAAACTGCAGGCAAGAAAATAAAATCCGCGAACTTCGGCGACTGTGGAGGGTTTGCTTTTTGTTGATTCGTTTCGGGACTGGTTTCGTGAAGGCTCTCTCATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGGTGTGTGGTTCTGTTCTTAATTGTTTCTGATGCTTTGTTTTTTTGTTTTTTTTTTTTTCAAATAGTCTTACGAATTTACCTAATGCTTTTGAGGAATGTAGCTTAGTAGATTTTGATGATTGAACTTCCTCCGTCATGGTGTAGAAAGCAAAAGATTGAACTAAATATTCACTATGAAAGAGCAATGCCAACTTGTTGAATAGAATCTTCTTTAAAGAAGAGATCAGATTTCATTGATGAATGAAATAAAGTCACATCACCCACGATTTTGTGCACTATAATTTCTAATAGCCTCATTAACAACGAGAAATTTGTCAAGAACTTGCTTTCCCTCCACAAAATCTCTCAGGTTATTGGATATGCTTAATGGAAAAAATTGTTTCCATCTCCTTCTCTGATCCGCTCACTTAGAACTTTTTCTTGAACTAACCTTCTACAGTTTGACAAGAACACCAACGTTCTTCCATGAATTCTTTTAGCTCTACTGTGTTTTTGCTTACCTTGAGAACAGAAACATAAAATCTAAACAACTACAAGAAAAGTTACTTTCTATTCCGGAAATTTTTGTATTGATTAATCCATCAATAGGGGCCTTCATACAAAAGAAAAATTATCCTTCATTTTCTATGACATCTTGTGATCTTGGTGGAGAGGTAGAAGGGACAGGTCAACATGGACTGGAATTGAAATTTGTACTCACAAGCAGTGTTCTTCTGAGTAACTGTACTCTGAATTTGTTATCATCTTAGAAATTTATTCTTCTTTCCTTAATATTTTGATATGCAGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGGTAATTGGAATTTTTGGATATTTCCCCCCAACCCTGTGGGAAATGTGGCTTATTATCTCTGTTTATGAACAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTATCATTTCCAGACTGCTACCTAAAATGCTTAGAATTTGTGTGAATTAGCCCATCTGAATTTCTTTTTGAGCCCTTAGACTCCTTTATCCGTATTATCAATCAAGTGTATGTTTGATTTAGATGGCTTAATGTATTGATGCTCGTAATGAAAATACTTCTTGATGCAGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGATACAACTACCATTGTTTATCCCGTTTGAGAAAGATTGTTCGGTTGTCTCATCTTTGGGTGTTTGGCTATTTGTTCCATCTCTTGCTATGATATGTTTTCAGGCGAATTACAGACAGCATTAATGAAGAGAGAATCTAGCTTCTTGGATGTATTAATTTTTTTCCCAAATTTTTCTTTATGTTGAAAGATGCATCAGATCATTTGTTACTCATGAATTATGTTAGTCATTACTTTAACCTGAGAATATTTTTGCATAAGGTCGAGTATTTTAGATTGACAAGATTTCCGAATGTTCTAATTAGGTGGTGGAACGACGGATGGAAGCATGTTTCCTGAAGTTGACAGCACGTGGAAAGTATGCATTGACCTCCTTTTTTGGCGTTTAATTGTAGTTGTTTGCTTCATACTCTTTACTGTCATTGCTCCCGATGACTTTATATATTCAATTATTTCTTCTGAGTCTTAAAAGAAGTAGATAACATAACTTTGTGAAAAGTAGAAGGTAAGAGTCACTGTTCTAATCTACCATGTAAATAATAAAGAGCTTAGACGGAATTGGTTCAAGTCATGGTGACCACCTACCTAGAATTTAATATCCTACGAGTTGAGAATAGTCTAGGTGTGTGCAAGCTGGTCAAAGACACTCACGGATTAGAAAAGATCACTGTTTTGGTAAGAGCCTTTATTTCAAAAAGAGCTTGAACCTTTCAGTTTCAACGACTCGGGTAATATTAGCAAAAAGCATGAGGATAAGTTCACTGGTCAAATATTTCATTTTCATGGGTCTTGGTTTGTTTTCTCATTTATGGTTGTGGTTCATTTTTCTTGCTCATGAAAATCGCTGTCGGACTGATGATCAAAACACTTATATGGCTTTGAATTCGAGTTATGGTTGATCTATTATTTCAACTCCTTCATATGGTACTAGTTTGTAGAGGACATGAAATGAAAATCTTCTGCACAAATGGTTTCTCTAATTCTAAATCATCATCCTTGTAGACATTTAATGAGGTACAAAGTCTTCTAAGTAAAACCAACGGAAAGGTGGTCGGCGATTTGATGACACCGGTGCCTCTTGTCGTTAGAGAAAATAGTGATCTTGAGGACGCTGCTAGGTTCAAACATGCTTTTTTCCTTTTTCTTTATAGTATCATATCATTTCCTTAACTTTTTCGTTTTGAACCACTTCTATTTTCTCAAATGCAGATTATTGCTTCAGACAAAGTATCGCCGCCTTCCAGTGGTAGATGCGGATGGAAAGCTGGTAAGAGATATCTATCTAGTCCACTCCTCATCTGAATTATTGGTTGTTTTTGCCATCAAAATGATGAAACCTTTCATGAAGGTTGGGATTATCACAAGAGGCAATGTGGTAAGAGCT

mRNA sequence

ATCTTCTTCCACAGTTCAAAAACTGCAGGCAAGAAAATAAAATCCGCGAACTTCGGCGACTGTGGAGGGTTTGCTTTTTGTTGATTCGTTTCGGGACTGGTTTCGTGAAGGCTCTCTCATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGATACAACTACCATTGTTTATCCCGTTTGAGAAAGATTGTTCGGTTGTCTCATCTTTGGGTGTTTGGCTATTTGTTCCATCTCTTGCTATGATATGTTTTCAGGCGAATTACAGACAGCATTAATGAAGAGAGAATCTAGCTTCTTGGATGTATTAATTTTTTTCCCAAATTTTTCTTTATGTTGAAAGATGCATCAGATCATTTGTTACTCATGAATTATGTGGTGGAACGACGGATGGAAGCATGTTTCCTGAAGTTGACAGCACGTGGAAAACATTTAATGAGGTACAAAGTCTTCTAAGTAAAACCAACGGAAAGGTGGTCGGCGATTTGATGACACCGGTGCCTCTTGTCGTTAGAGAAAATAGTGATCTTGAGGACGCTGCTAGATTATTGCTTCAGACAAAGTATCGCCGCCTTCCAGTGGTAGATGCGGATGGAAAGCTGGTTGGGATTATCACAAGAGGCAATGTGGTAAGAGCT

Coding sequence (CDS)

ATGGAGTCGATTGGCTGTAGTTTGAGTTCTTTATCGCTTGCGCAATTCAGGGCAAATAGTTTTTCGGTTCAGGAGCTGCTGTTTGGGCCTTGCCGGAGACCTTCATCGCCGATAGTTCATGCATCTGTGGCTCGGAGCTTTTCTACGTCTTGTCGATCTACGGGGCTCCGGAAATCTACTTCAATCGCCGCTAGTGGCACCTTGATGGCCAATTCTGTACCGTCAAGTAATGGTGTGTACACTGTTGGTGACTTTATGACTAGGAAAGAGGAGTTACATGTTGTAAAGCCCACAACCACTGTCGAAGAAGCTTTAGAAATTCTGGTGGAGAAAAGGATCACAGGATTTCCAGTAATTGATGACAATTGGAAACTGGTTGGCGTCGTATCGGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATCAGAACTTTCTTGTTATTGCTGA

Protein sequence

MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISGISELSCYC
Homology
[Close]
BLAST of Carg11604 vs. NCBI nr
Match: XP_022948196.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-68
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCSLSSLSLAQFRA SFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST
Sbjct: 1   MESIGCSLSSLSLAQFRATSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID
Sbjct: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 142

[Close]
BLAST of Carg11604 vs. NCBI nr
Match: XP_023532068.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.6 bits (675), Expect = 2.0e-67
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCSLSSLSLAQFRA SFSVQELLFGPCRRPSSPIVHASVARSFSTSCR TGLRKST
Sbjct: 1   MESIGCSLSSLSLAQFRATSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRFTGLRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           S+AA+GTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID
Sbjct: 61  SVAANGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 142

[Close]
BLAST of Carg11604 vs. NCBI nr
Match: XP_023007339.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 260.8 bits (665), Expect = 2.9e-66
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCSLSSLSLAQFRA SFSVQELLF PCRRPSSPIVHASV+RSFSTSCR TGLRKST
Sbjct: 1   MESIGCSLSSLSLAQFRATSFSVQELLFEPCRRPSSPIVHASVSRSFSTSCRFTGLRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           SIAA+GTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID
Sbjct: 61  SIAANGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 142

[Close]
BLAST of Carg11604 vs. NCBI nr
Match: XP_004139474.1 (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus] >KGN64903.1 hypothetical protein Csa_1G152500 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 9.4e-57
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCSLSSLSLA FRA SFSVQE+LFGPCRRPS PI+HASVA+SF        LRKST
Sbjct: 1   MESIGCSLSSLSLAPFRAKSFSVQEMLFGPCRRPSLPILHASVAQSFPE------LRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           SIAASGTLMANSVPS  GVY VGDFMTRKEELHVVKPTT+V+EALEILVEKRITGFPVID
Sbjct: 61  SIAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 136

[Close]
BLAST of Carg11604 vs. NCBI nr
Match: XP_022986137.1 (CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 2.7e-56
Identity = 119/142 (83.80%), Postives = 129/142 (90.85%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCS +SLSLAQFRANSFS+QELLFGP RRP SPIVHASV++SF  S R    RKST
Sbjct: 1   MESIGCSFTSLSLAQFRANSFSIQELLFGPRRRPPSPIVHASVSQSFPASSRFPEQRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           S++ASGTLMANS PS +GVYTVGDFMTR+EELHVVKPTT+V+EALEILVEKRITGFPVID
Sbjct: 61  SLSASGTLMANSAPSRSGVYTVGDFMTRREELHVVKPTTSVDEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNW LVGVVSDYDLLALDSISG
Sbjct: 121 DNWNLVGVVSDYDLLALDSISG 142

[Close]
BLAST of Carg11604 vs. TAIR10
Match: AT4G36910.1 (Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-31
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 0 

Query: 11  LSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMA 70
           LS    RA+S      L  P      P    + +RSF +  R      S S AA  TLM 
Sbjct: 10  LSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRI----PSASSAAGSTLMT 69

Query: 71  NSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVS 130
           NS    +GVYTVG+FMT+KE+LHVVKPTTTV+EALE+LVE RITGFPVID++WKLVG+VS
Sbjct: 70  NSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVS 129

Query: 131 DYDLLALDSISG 143
           DYDLLALDSISG
Sbjct: 130 DYDLLALDSISG 137

[Close]
BLAST of Carg11604 vs. TAIR10
Match: AT4G34120.1 (Cystathionine beta-synthase (CBS) family protein)

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-27
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 0 

Query: 46  SFSTSCRSTGLRKST---SIAASGTLMA-------NSVPSSNGVYTVGDFMTRKEELHVV 105
           SFS    S   R ST   SI  S    A       NSVP+ NG YTVGDFMT ++ LHVV
Sbjct: 33  SFSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVV 92

Query: 106 KPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISGISE 146
           KP+T+V++ALE+LVEK++TG PVIDDNW LVGVVSDYDLLALDSISG S+
Sbjct: 93  KPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQ 142

[Close]
BLAST of Carg11604 vs. Swiss-Prot
Match: sp|O23193|CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX1 PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-30
Identity = 77/132 (58.33%), Postives = 90/132 (68.18%), Query Frame = 0 

Query: 11  LSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMA 70
           LS    RA+S      L  P      P    + +RSF +  R      S S AA  TLM 
Sbjct: 10  LSFTPLRASSSPSSPYLLLPRFLSVQPCHKFTFSRSFPSKSRI----PSASSAAGSTLMT 69

Query: 71  NSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVS 130
           NS    +GVYTVG+FMT+KE+LHVVKPTTTV+EALE+LVE RITGFPVID++WKLVG+VS
Sbjct: 70  NSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVS 129

Query: 131 DYDLLALDSISG 143
           DYDLLALDSISG
Sbjct: 130 DYDLLALDSISG 137

[Close]
BLAST of Carg11604 vs. Swiss-Prot
Match: sp|Q9C5D0|CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CBSX2 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 0 

Query: 46  SFSTSCRSTGLRKST---SIAASGTLMA-------NSVPSSNGVYTVGDFMTRKEELHVV 105
           SFS    S   R ST   SI  S    A       NSVP+ NG YTVGDFMT ++ LHVV
Sbjct: 33  SFSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVV 92

Query: 106 KPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISGISE 146
           KP+T+V++ALE+LVEK++TG PVIDDNW LVGVVSDYDLLALDSISG S+
Sbjct: 93  KPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQ 142

[Close]
BLAST of Carg11604 vs. Swiss-Prot
Match: sp|O67820|IMDH_AQUAE (Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) OX=224324 GN=guaB PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.3e-04
Identity = 19/40 (47.50%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 95  VKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDL 135
           VKP T V+EAL+I+ + +I+G PV+D+  KL+G++++ DL
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

[Close]
BLAST of Carg11604 vs. Swiss-Prot
Match: sp|P42851|IMDH_PYRFU (Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=guaB PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.2e-04
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 0 

Query: 81  TVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLA 137
           TV + MTR  E+  V  +  VEEAL+I++E RI   PV++++ KLVG+++  DL+A
Sbjct: 151 TVKELMTR--EVITVPESVDVEEALKIMMENRIDRLPVVNEDGKLVGLITMSDLVA 204

[Close]
BLAST of Carg11604 vs. TrEMBL
Match: tr|A0A0A0LSY7|A0A0A0LSY7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G152500 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 6.2e-57
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESIGCSLSSLSLA FRA SFSVQE+LFGPCRRPS PI+HASVA+SF        LRKST
Sbjct: 1   MESIGCSLSSLSLAPFRAKSFSVQEMLFGPCRRPSLPILHASVAQSFPE------LRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           SIAASGTLMANSVPS  GVY VGDFMTRKEELHVVKPTT+V+EALEILVEKRITGFPVID
Sbjct: 61  SIAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 136

[Close]
BLAST of Carg11604 vs. TrEMBL
Match: tr|A0A1S3CFF0|A0A1S3CFF0_CUCME (CBS domain-containing protein CBSX1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500318 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.3e-54
Identity = 120/142 (84.51%), Postives = 126/142 (88.73%), Query Frame = 0 

Query: 1   MESIGCSLSSLSLAQFRANSFSVQELLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKST 60
           MESI CSLSSLSLA  RA SFSVQE+LFGPCRR S PI+HASVA+SF        LRKST
Sbjct: 1   MESIVCSLSSLSLAHLRAKSFSVQEMLFGPCRRLSLPILHASVAQSFPE------LRKST 60

Query: 61  SIAASGTLMANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVID 120
           S+AASGTLMANSVPS  GVYTVGDFMTRKEELHVVKPTT+V+EALEILVEKRITGFPVID
Sbjct: 61  SLAASGTLMANSVPSGTGVYTVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVID 120

Query: 121 DNWKLVGVVSDYDLLALDSISG 143
           DNWKLVGVVSDYDLLALDSISG
Sbjct: 121 DNWKLVGVVSDYDLLALDSISG 136

[Close]
BLAST of Carg11604 vs. TrEMBL
Match: tr|A5BZA6|A5BZA6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021555 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 0 

Query: 26  LLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMANSVPSSNGVYTVGDF 85
           LLF P R+P    V ++V    S S R +GLR+S ++AA+GTLMANSVPS NGVYTVGDF
Sbjct: 38  LLFQPGRKPP---VGSTVG---SRSERISGLRRSPALAAAGTLMANSVPSKNGVYTVGDF 97

Query: 86  MTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISGISE 145
           MTRKE+LHVVK TTTVEEALEILVE RITGFPVIDD+WKLVG+VSDYDLLALDSIS + +
Sbjct: 98  MTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGLVSDYDLLALDSISELPQ 152

Query: 146 L 147
           L
Sbjct: 158 L 152

[Close]
BLAST of Carg11604 vs. TrEMBL
Match: tr|F6H4H6|F6H4H6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g00200 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.7e-35
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 0 

Query: 26  LLFGPCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLMANSVPSSNGVYTVGDF 85
           LLF P R+P    V ++V    S S R +G+R+S ++AA+GTLMANSVPS NGVYTVGDF
Sbjct: 38  LLFQPGRKPP---VGSTVG---SRSERISGIRRSPALAAAGTLMANSVPSKNGVYTVGDF 97

Query: 86  MTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVVSDYDLLALDSISG 143
           MTRKE+LHVVK TTTVEEALEILVE RITGFPVIDD+WKLVG+VSDYDLLALDSISG
Sbjct: 98  MTRKEDLHVVKATTTVEEALEILVENRITGFPVIDDDWKLVGLVSDYDLLALDSISG 148

[Close]
BLAST of Carg11604 vs. TrEMBL
Match: tr|A0A2P4ISQ0|A0A2P4ISQ0_QUESU (Cbs domain-containing protein cbsx1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_12746 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32
Identity = 84/133 (63.16%), Postives = 95/133 (71.43%), Query Frame = 0 

Query: 11  LSLAQFRANSFSVQELLFG-PCRRPSSPIVHASVARSFSTSCRSTGLRKSTSIAASGTLM 70
           L+LA  R  + S++   +  PC  P  P                +G R S S++ASGTL 
Sbjct: 12  LALANHRTPAVSLRSFSYQLPCPVPPRP-----------WRTLVSGPRGSFSVSASGTLT 71

Query: 71  ANSVPSSNGVYTVGDFMTRKEELHVVKPTTTVEEALEILVEKRITGFPVIDDNWKLVGVV 130
           ANSVP  NGVYTVGDFMTRKE+LHVVKPTTTV+EALE LVE RITGFPVIDDNWKLVG+V
Sbjct: 72  ANSVPPRNGVYTVGDFMTRKEDLHVVKPTTTVDEALEALVENRITGFPVIDDNWKLVGLV 131

Query: 131 SDYDLLALDSISG 143
           SDYDLLALDSISG
Sbjct: 132 SDYDLLALDSISG 133

The following BLAST results are available for this feature:
BLAST of Carg11604 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022948196.11.4e-6899.30CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita moschata][more]
XP_023532068.12.0e-6797.18CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita pepo subsp. p... [more]
XP_023007339.12.9e-6696.48CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima][more]
XP_004139474.19.4e-5786.62PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sati... [more]
XP_022986137.12.7e-5683.80CBS domain-containing protein CBSX1, chloroplastic-like [Cucurbita maxima][more]
BLAST of Carg11604 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G36910.13.7e-3158.33Cystathionine beta-synthase (CBS) family protein[more]
AT4G34120.19.4e-2761.82Cystathionine beta-synthase (CBS) family protein[more]
BLAST of Carg11604 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O23193|CBSX1_ARATH6.7e-3058.33CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
sp|Q9C5D0|CBSX2_ARATH1.7e-2561.82CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana OX=37... [more]
sp|O67820|IMDH_AQUAE6.3e-0447.50Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) OX=22432... [more]
sp|P42851|IMDH_PYRFU8.2e-0444.64Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587... [more]
BLAST of Carg11604 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LSY7|A0A0A0LSY7_CUCSA6.2e-5786.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G152500 PE=4 SV=1[more]
tr|A0A1S3CFF0|A0A1S3CFF0_CUCME1.3e-5484.51CBS domain-containing protein CBSX1, chloroplastic-like OS=Cucumis melo OX=3656 ... [more]
tr|A5BZA6|A5BZA6_VITVI5.1e-3572.73Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021555 PE=4 SV=1[more]
tr|F6H4H6|F6H4H6_VITVI6.7e-3574.36Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0031g00200 PE=4 SV=... [more]
tr|A0A2P4ISQ0|A0A2P4ISQ0_QUESU9.0e-3263.16Cbs domain-containing protein cbsx1, chloroplastic OS=Quercus suber OX=58331 GN=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000644CBS_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11604-RACarg11604-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000644CBS domainSMARTSM00116cbs_1coord: 91..139
e-value: 1.6E-8
score: 44.3
IPR000644CBS domainPFAMPF00571CBScoord: 82..136
e-value: 2.9E-15
score: 56.4
IPR000644CBS domainPROSITEPS51371CBScoord: 86..145
score: 13.945
NoneNo IPR availableGENE3DG3DSA:3.10.580.10coord: 76..147
e-value: 2.8E-18
score: 68.3
NoneNo IPR availablePANTHERPTHR43803:SF1SUBFAMILY NOT NAMEDcoord: 45..143
NoneNo IPR availablePANTHERPTHR43803FAMILY NOT NAMEDcoord: 45..143
NoneNo IPR availableSUPERFAMILYSSF54631CBS-domain paircoord: 79..137

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11604CmaCh02G005240Cucurbita maxima (Rimu)carcmaB1466
Carg11604CmoCh02G005360Cucurbita moschata (Rifu)carcmoB1422
Carg11604Cp4.1LG05g11560Cucurbita pepo (Zucchini)carcpeB1476
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None