Carg11170-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11170-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_013 : 309686 .. 311773 (+)
Sequence length	1136

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCAATTTCAGATCTGAAAGAGATCTCTCTCAATTTTCTTCTCTCGCAATTTCAGATCTGAAAGAGATCTGAAAGAAATGGGTTCTCTCTCATTTCACGATCTGGGTTCATATCCTCAGTTTTATTGTTATTGTTTTTTAGTCCCTCTGATCTCTTTTCCGGCTTTTTCTTGTTTGTTCATGTTCCAGTTCGATCCCTTCATGGATTCTAGCTTGAAAATGCCGGAATTGGCTTCTTCTTATTGATTTACTGTTTGTCGGTGAGTTTTTCTTTCTCTCCTGAAGAGTAAAATAACAATAATTGTAGAAAAAAATGGTCCAATCCCCTACCCTTTTCCTCCTACTGCAAATGTTCTTCATTATGATGAGTACGGTGTTTCCTTTGTATGCTCTGTTGTCTGGTTTTAATGAAATCAGGTGGAGAAACGAACTCCACTCCTTATTTCATTCATTTTCTGATTTTCATTTGTCGTTCGTGAAAGAGAACTGAAAAAATGGGGTGGGGATAGGGGGAATTCCTTATTTAATTCAATTTGTGCTTTTCCTTGTGCTTCTATCTAGTCATTGTGGTTAATACTATCGATGTAAATTTGACTGGACAGGCTTATTACTTAAGTTTTGATTAAGTTTGTGTGATGGGATTAGTAACTAATAGATAATGGCCATGTCATAGCAACGTTCTTGAATGTTGTTATGGTATGGGAGGACAAAGAAGTATGATTCGAAGTTTAAGGATGTCATTGGCATTTTATAAAGTTTAGGATGTAAATGAACTGAACAAAATGCTCAAAGTTTATGGTTACAATTTTCCGTGTATAGAAATGTGTTTAAAGTTATTTTGGGTTTATTTTTCATAAAAGGATTCTCAGAAGTGTTAAGAAGATGAGAAGAAAAGAAGACCCCTTTGATTCAGGATCCTGGTAGAATGAATGCCCTGCTGAAATGGAAATTAGAACTTCTTTAGATGGGCAGTTTAGATTATATGGCTACAGAAGATAGAGAGTTTGAAATAGATCTTGAAGGTGGTGGTTATACTAGCGAAGATGATTTGAGCAGTGAAACTGACTCAACATCCAAGACGCATGCTAGAAAAACTTTTAGCAGGCTTCGAAGCGGGGTTCTGTGTGCTGATGGATCTATAAATCGAAGTGGTAGCTTTGCTTCCAGTAGTGATTCCACCAAGCTTGTTAAGCTAGGTGTTGATGAGAATGTGCAGTTGTTGTTGGGCAGTTTAGAGGGAGAAAAGAGAAGAGAATTTGCAGCTCTTGTAGAGAAGAAGAAGAACGTGAAGGAGAAGATTAAGAAGGGAAAGGTTCACAAGCCACCACGACCTCCACGGGGTCCGTCGTTGGATGCTGCTGACAGGATATTTGTTAAAGAGATCGCCGAGTTGGCAGTGAAAAAACGTGCCACCGTTGAGCGAATAAAAGCTTTGAAGAAGATGAAAGCAGAGAGAACATCTTCATCCAACAGCAGCTTACCTGCCTTATTTATCACATTGCTTTTCTTTGTAATCATTATCTTTCAAGGTATGGGGTAGTTCAAATCATATTTTTCTGCAAATTTTCAATACTTTCATGACTGTACTTCTTTTTCCTTGTTTGGCATGGCTATTACGAACAATGCATTGATAGTAAAAACCTTGTACACAATCAACCAAGGAGAGTTTGAGATACCCTTTCACCTTCAAATTTACTATAATTGCTAAAAGCTCTCAAATTCACATTGTGCCAAAAGGAGGATAGTTCTGAAGCATCTAATGTATTCTCATGTTTGTAAAAATCTCCTTGCAGGAATGAGTGCTATAGGCAGTGTAAGGGTATCGGAGTCTCCTGTGGCTTCCGGTGGTGGAAGCGCAGGCTTGATTGTTCAGAACTTGCCTCAATCCTCCCCTAACGTTAACGGAGCTCAATCCCATGTTCTCGAGTCAGTTTAGCTCAATCTTTATATGGTTCATTGTAGTAAACTCTTATGTTTGTGTGTCATTCATGTTAAATCCATTTCTCTGATGCAGTTTTGCAGGAAATCAAACTTCTGACCCTGCTACGATTGAAGGGAGCTCAGTGGAAGAGCTGAAGAACCATTGA

mRNA sequence

CCCGCAATTTCAGATCTGAAAGAGATCTCTCTCAATTTTCTTCTCTCGCAATTTCAGATCTGAAAGAGATCTGAAAGAAATGGGTTCTCTCTCATTTCACGATCTGGGTTCATATCCTCAGTTTTATTGTTATTGTTTTTTAGTCCCTCTGATCTCTTTTCCGGCTTTTTCTTGTTTGTTCATGTTCCAGTTCGATCCCTTCATGGATTCTAGCTTGAAAATGCCGGAATTGGCTTCTTCTTATTGATTTACTGTTTGTCGGATTCTCAGAAGTGTTAAGAAGATGAGAAGAAAAGAAGACCCCTTTGATTCAGGATCCTGGTAGAATGAATGCCCTGCTGAAATGGAAATTAGAACTTCTTTAGATGGGCAGTTTAGATTATATGGCTACAGAAGATAGAGAGTTTGAAATAGATCTTGAAGGTGGTGGTTATACTAGCGAAGATGATTTGAGCAGTGAAACTGACTCAACATCCAAGACGCATGCTAGAAAAACTTTTAGCAGGCTTCGAAGCGGGGTTCTGTGTGCTGATGGATCTATAAATCGAAGTGGTAGCTTTGCTTCCAGTAGTGATTCCACCAAGCTTGTTAAGCTAGGTGTTGATGAGAATGTGCAGTTGTTGTTGGGCAGTTTAGAGGGAGAAAAGAGAAGAGAATTTGCAGCTCTTGTAGAGAAGAAGAAGAACGTGAAGGAGAAGATTAAGAAGGGAAAGGTTCACAAGCCACCACGACCTCCACGGGGTCCGTCGTTGGATGCTGCTGACAGGATATTTGTTAAAGAGATCGCCGAGTTGGCAGTGAAAAAACGTGCCACCGTTGAGCGAATAAAAGCTTTGAAGAAGATGAAAGCAGAGAGAACATCTTCATCCAACAGCAGCTTACCTGCCTTATTTATCACATTGCTTTTCTTTGTAATCATTATCTTTCAAGGAATGAGTGCTATAGGCAGTGTAAGGGTATCGGAGTCTCCTGTGGCTTCCGGTGGTGGAAGCGCAGGCTTGATTGTTCAGAACTTGCCTCAATCCTCCCCTAACGTTAACGGAGCTCAATCCCATGTTCTCGATTTTGCAGGAAATCAAACTTCTGACCCTGCTACGATTGAAGGGAGCTCAGTGGAAGAGCTGAAGAACCATTGA

Coding sequence (CDS)

ATGGGCAGTTTAGATTATATGGCTACAGAAGATAGAGAGTTTGAAATAGATCTTGAAGGTGGTGGTTATACTAGCGAAGATGATTTGAGCAGTGAAACTGACTCAACATCCAAGACGCATGCTAGAAAAACTTTTAGCAGGCTTCGAAGCGGGGTTCTGTGTGCTGATGGATCTATAAATCGAAGTGGTAGCTTTGCTTCCAGTAGTGATTCCACCAAGCTTGTTAAGCTAGGTGTTGATGAGAATGTGCAGTTGTTGTTGGGCAGTTTAGAGGGAGAAAAGAGAAGAGAATTTGCAGCTCTTGTAGAGAAGAAGAAGAACGTGAAGGAGAAGATTAAGAAGGGAAAGGTTCACAAGCCACCACGACCTCCACGGGGTCCGTCGTTGGATGCTGCTGACAGGATATTTGTTAAAGAGATCGCCGAGTTGGCAGTGAAAAAACGTGCCACCGTTGAGCGAATAAAAGCTTTGAAGAAGATGAAAGCAGAGAGAACATCTTCATCCAACAGCAGCTTACCTGCCTTATTTATCACATTGCTTTTCTTTGTAATCATTATCTTTCAAGGAATGAGTGCTATAGGCAGTGTAAGGGTATCGGAGTCTCCTGTGGCTTCCGGTGGTGGAAGCGCAGGCTTGATTGTTCAGAACTTGCCTCAATCCTCCCCTAACGTTAACGGAGCTCAATCCCATGTTCTCGATTTTGCAGGAAATCAAACTTCTGACCCTGCTACGATTGAAGGGAGCTCAGTGGAAGAGCTGAAGAACCATTGA

Protein sequence

MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSINRSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKKGKVHKPPRPPRGPSLDAADRIFVKEIAELAVKKRATVERIKALKKMKAERTSSSNSSLPALFITLLFFVIIIFQGMSAIGSVRVSESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTSDPATIEGSSVEELKNH

Homology

[Close]

BLAST of Carg11170-RA vs. NCBI nr
Match: XP_022983577.1 (uncharacterized protein LOC111482138 [Cucurbita maxima])

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 223/256 (87.11%), Postives = 225/256 (87.89%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSK HARKTFSRLRSGVLCADGSIN
Sbjct: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKMHARKTFSRLRSGVLCADGSIN 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKKXXXXXX 120
           RSGSFASSSDSTKLVKLGVDENVQLL+GSLEGEKRREFAALVEKKKNVKEKIK XXXXXX
Sbjct: 61  RSGSFASSSDSTKLVKLGVDENVQLLMGSLEGEKRREFAALVEKKKNVKEKIKXXXXXXX 120

Query: 121 XXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITLL 180
           XXXXXXXXXXXXX                        XXXXXXXXXXXXX   ALFITLL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALFITLL 180

Query: 181 FFVIIIFQGMSAIGSVRVSESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTS 240
           FFV+IIFQGMSAIGSVRV ESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTS
Sbjct: 181 FFVVIIFQGMSAIGSVRVPESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTS 240

Query: 241 DPATIEGSSVEELKNH 257
           DPATIE SSVEELKNH
Sbjct: 241 DPATIEESSVEELKNH 256

[Close]

BLAST of Carg11170-RA vs. NCBI nr
Match: XP_023527773.1 (uncharacterized protein LOC111790892 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 1.5e-86
Identity = 223/256 (87.11%), Postives = 225/256 (87.89%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN
Sbjct: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKKXXXXXX 120
           RSGSFASSSDSTKLVKLGVDENVQLL+GSLEGEKRREFAALVEKKKNVKEKIK XXXXXX
Sbjct: 61  RSGSFASSSDSTKLVKLGVDENVQLLMGSLEGEKRREFAALVEKKKNVKEKIKXXXXXXX 120

Query: 121 XXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITLL 180
           XXXXXXXXXXXXX                        XXXXXXXXXXXXX    LFITLL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFITLL 180

Query: 181 FFVIIIFQGMSAIGSVRVSESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTS 240
           FFVIIIFQGMSAIGSVRVSESPVASGGGSA LIVQNLPQSSPNVNGAQSHVL+FAGNQTS
Sbjct: 181 FFVIIIFQGMSAIGSVRVSESPVASGGGSASLIVQNLPQSSPNVNGAQSHVLNFAGNQTS 240

Query: 241 DPATIEGSSVEELKNH 257
           DPATIEG SVEELKNH
Sbjct: 241 DPATIEGRSVEELKNH 256

[Close]

BLAST of Carg11170-RA vs. NCBI nr
Match: XP_022934397.1 (uncharacterized protein LOC111441585 [Cucurbita moschata])

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 221/256 (86.33%), Postives = 224/256 (87.50%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETD TSKTHARK FSRLRSGVLCADGSIN
Sbjct: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDLTSKTHARKNFSRLRSGVLCADGSIN 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKKXXXXXX 120
           R+GSFASSSDSTKLVKLGVDENVQLL+GSLEGEKRREFAALVEKKKNVKEKIK XXXXXX
Sbjct: 61  RNGSFASSSDSTKLVKLGVDENVQLLMGSLEGEKRREFAALVEKKKNVKEKIKXXXXXXX 120

Query: 121 XXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITLL 180
           XXXXXXXXXXXXX                        XXXXXXXXXXXXX    LFITLL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFITLL 180

Query: 181 FFVIIIFQGMSAIGSVRVSESPVASGGGSAGLIVQNLPQSSPNVNGAQSHVLDFAGNQTS 240
           FFVIIIFQGMSAIGSVRVSESPVASGGGSA LIVQNLPQSSPNVNGAQSHVLDFAGNQTS
Sbjct: 181 FFVIIIFQGMSAIGSVRVSESPVASGGGSASLIVQNLPQSSPNVNGAQSHVLDFAGNQTS 240

Query: 241 DPATIEGSSVEELKNH 257
           DPATIEGSSVEEL+NH
Sbjct: 241 DPATIEGSSVEELENH 256

[Close]

BLAST of Carg11170-RA vs. NCBI nr
Match: XP_008447470.1 (PREDICTED: uncharacterized protein LOC103489909 [Cucumis melo] >XP_008447471.1 PREDICTED: uncharacterized protein LOC103489909 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 9.4e-73
Identity = 193/263 (73.38%), Postives = 212/263 (80.61%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MG+LD MAT+DREFEIDLEGGG TSEDDLSSETDSTSK HARKTF RLRSG L +D S++
Sbjct: 1   MGALDCMATKDREFEIDLEGGGNTSEDDLSSETDSTSKRHARKTFGRLRSGFLSSDRSVS 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKK-XXXXX 120
           R+G+FASSS+STKLVKLGVD+NV+LL+ S +GEKRREF A  E K NVK KIKK      
Sbjct: 61  RTGTFASSSNSTKLVKLGVDDNVELLMESSDGEKRREFGAFAE-KNNVKGKIKKNGKVHK 120

Query: 121 XXXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITL 180
            XXXXXXXXXXX  RIFV+EIAELAVKKRATVERIKA XXXXXX       SLPALFITL
Sbjct: 121 PXXXXXXXXXXXADRIFVREIAELAVKKRATVERIKAXXXXXXXKASSFNSSLPALFITL 180

Query: 181 LFFVIIIFQGMSAIGS--VRVSESPVASGGGSAGLIVQNLP--QSSPNVNGAQSHVLDFA 240
           LFFV+IIFQGMSA GS  V VS+SP  S GG AGLIVQ+    QSSPNVN  +SH+L+FA
Sbjct: 181 LFFVVIIFQGMSAKGSTMVMVSDSPAPSVGGGAGLIVQHSVQFQSSPNVNEPESHILNFA 240

Query: 241 GNQTSDPATI--EGSSVEELKNH 257
           G QTSDPA    EGSSVEELKNH
Sbjct: 241 GKQTSDPAAAVQEGSSVEELKNH 262

[Close]

BLAST of Carg11170-RA vs. NCBI nr
Match: XP_004147994.1 (PREDICTED: uncharacterized protein LOC101214824 [Cucumis sativus] >XP_011651534.1 PREDICTED: uncharacterized protein LOC101214824 [Cucumis sativus] >KGN58129.1 hypothetical protein Csa_3G535620 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 183/263 (69.58%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MG++D MAT+DREFEIDLEGGG TSEDDLSSETDSTSK HARKTF RLRSG L +D S++
Sbjct: 1   MGAIDCMATKDREFEIDLEGGGNTSEDDLSSETDSTSKPHARKTFGRLRSGFLSSDRSVS 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKK-XXXXX 120
           R+G FASSS+STKLVKLGVDENV+LL+ S +GEKRREF A  E K NVK KIKK      
Sbjct: 61  RTGIFASSSNSTKLVKLGVDENVELLMESSDGEKRREFGAFAE-KNNVKGKIKKNGKVHK 120

Query: 121 XXXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITL 180
             XXXXXX      RIFV+EIAELAVKKRATVERIKAL             SLPALFITL
Sbjct: 121 PPXXXXXXSLDAADRIFVREIAELAVKKRATVERIKALKKMKAEKTSSFNSSLPALFITL 180

Query: 181 LFFVIIIFQGMSAIGS--VRVSESPVASGGGSAGLIVQNLP--QSSPNVNGAQSHVLDFA 240
           LFFV+IIFQGMSA GS  V VS+SP  S GGSAGLIVQ+    QSSPNVN  +SH+L+FA
Sbjct: 181 LFFVVIIFQGMSAKGSTMVTVSDSPAPSVGGSAGLIVQHSLQFQSSPNVNEPESHILNFA 240

Query: 241 GNQTSDPATI--EGSSVEELKNH 257
           G QTSDPAT   E S VEELKNH
Sbjct: 241 GKQTSDPATAVREASLVEELKNH 262

[Close]

BLAST of Carg11170-RA vs. TrEMBL
Match: tr|A0A1S3BHI9|A0A1S3BHI9_CUCME (uncharacterized protein LOC103489909 OS=Cucumis melo OX=3656 GN=LOC103489909 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.2e-73
Identity = 193/263 (73.38%), Postives = 212/263 (80.61%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MG+LD MAT+DREFEIDLEGGG TSEDDLSSETDSTSK HARKTF RLRSG L +D S++
Sbjct: 1   MGALDCMATKDREFEIDLEGGGNTSEDDLSSETDSTSKRHARKTFGRLRSGFLSSDRSVS 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKK-XXXXX 120
           R+G+FASSS+STKLVKLGVD+NV+LL+ S +GEKRREF A  E K NVK KIKK      
Sbjct: 61  RTGTFASSSNSTKLVKLGVDDNVELLMESSDGEKRREFGAFAE-KNNVKGKIKKNGKVHK 120

Query: 121 XXXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITL 180
            XXXXXXXXXXX  RIFV+EIAELAVKKRATVERIKA XXXXXX       SLPALFITL
Sbjct: 121 PXXXXXXXXXXXADRIFVREIAELAVKKRATVERIKAXXXXXXXKASSFNSSLPALFITL 180

Query: 181 LFFVIIIFQGMSAIGS--VRVSESPVASGGGSAGLIVQNLP--QSSPNVNGAQSHVLDFA 240
           LFFV+IIFQGMSA GS  V VS+SP  S GG AGLIVQ+    QSSPNVN  +SH+L+FA
Sbjct: 181 LFFVVIIFQGMSAKGSTMVMVSDSPAPSVGGGAGLIVQHSVQFQSSPNVNEPESHILNFA 240

Query: 241 GNQTSDPATI--EGSSVEELKNH 257
           G QTSDPA    EGSSVEELKNH
Sbjct: 241 GKQTSDPAAAVQEGSSVEELKNH 262

[Close]

BLAST of Carg11170-RA vs. TrEMBL
Match: tr|A0A0A0LB07|A0A0A0LB07_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535620 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.1e-73
Identity = 183/263 (69.58%), Postives = 201/263 (76.43%), Query Frame = 0


Query: 1   MGSLDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSIN 60
           MG++D MAT+DREFEIDLEGGG TSEDDLSSETDSTSK HARKTF RLRSG L +D S++
Sbjct: 1   MGAIDCMATKDREFEIDLEGGGNTSEDDLSSETDSTSKPHARKTFGRLRSGFLSSDRSVS 60

Query: 61  RSGSFASSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEKKKNVKEKIKK-XXXXX 120
           R+G FASSS+STKLVKLGVDENV+LL+ S +GEKRREF A  E K NVK KIKK      
Sbjct: 61  RTGIFASSSNSTKLVKLGVDENVELLMESSDGEKRREFGAFAE-KNNVKGKIKKNGKVHK 120

Query: 121 XXXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITL 180
             XXXXXX      RIFV+EIAELAVKKRATVERIKAL             SLPALFITL
Sbjct: 121 PPXXXXXXSLDAADRIFVREIAELAVKKRATVERIKALKKMKAEKTSSFNSSLPALFITL 180

Query: 181 LFFVIIIFQGMSAIGS--VRVSESPVASGGGSAGLIVQNLP--QSSPNVNGAQSHVLDFA 240
           LFFV+IIFQGMSA GS  V VS+SP  S GGSAGLIVQ+    QSSPNVN  +SH+L+FA
Sbjct: 181 LFFVVIIFQGMSAKGSTMVTVSDSPAPSVGGSAGLIVQHSLQFQSSPNVNEPESHILNFA 240

Query: 241 GNQTSDPATI--EGSSVEELKNH 257
           G QTSDPAT   E S VEELKNH
Sbjct: 241 GKQTSDPATAVREASLVEELKNH 262

[Close]

BLAST of Carg11170-RA vs. TrEMBL
Match: tr|A0A1Q3CU15|A0A1Q3CU15_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27121 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 0


Query: 4   LDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTF-SRLRSGV-LCADGSINR 63
           +DY+ +++RE E+DLE GG TSE+D + + +  ++T  RK F +R+  G+ L  DG +  
Sbjct: 1   MDYLVSKERELEVDLESGGTTSEEDRTDDPNLANRT--RKNFRNRIWGGIFLSFDGPVKV 60

Query: 64  SGSFASSSDSTKLVKLGVDENVQLLLG-SLEGEKRREFAALVEKKKNVKEKIKK 115
             S  S S S+  V+   DENV+LL+  S EGE   EF A V ++K+ + K KK
Sbjct: 61  ESSIDSCSSSSNFVE-AADENVELLIDKSSEGEGIPEFVA-VAQEKSAEGKRKK 110

[Close]

BLAST of Carg11170-RA vs. TrEMBL
Match: tr|A0A2N9IQQ6|A0A2N9IQQ6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54526 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.5e-05
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 7   MATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSINRSGSFA 66
           MA+ ++++E D+E GG TSE++ S + DS SK   +K   R+  G+L  DGSI      +
Sbjct: 1   MASREKDYEFDIESGGMTSEEEASKDLDS-SKRQVKKILKRVSGGILNFDGSITCGFGVS 60

Query: 67  SSSDSTKLVKLGVDENVQLLLGSLEGEKRREFAALVEK 105
           SSS+  K   +  D+   L+  S +GE+ R   A+VEK
Sbjct: 61  SSSNMVKSGGVSDDDVELLIEKSSDGEESRVQMAVVEK 97

[Close]

BLAST of Carg11170-RA vs. TrEMBL
Match: tr|A0A251KRI2|A0A251KRI2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G013000 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 90/243 (37.04%), Postives = 125/243 (51.44%), Query Frame = 0


Query: 4   LDYMATEDREFEIDLEGGGYTSEDDLSSETDSTSKTHARKTFSRLRSGVLCADGSINRSG 63
           +D+  + D E E+DLE GG TSE+D + +  S ++   +K  +   SG L  DG +  S 
Sbjct: 1   MDHSISRDSEHEVDLESGGTTSEEDGTYDLVSANR-QTKKLLNSDWSGPLSFDG-LGNSS 60

Query: 64  SFASSSDSTKLVKLGVDENVQLLLG-SLEGEKRREFAALVEKK--KNVKEKIKKXXXXXX 123
            F   +          DENV+ LL  + EGE   +    V KK  +        XXXXXX
Sbjct: 61  KFGGDA----------DENVEFLLDRNSEGEDGLQQIPFVNKKHLEXXXXXXXXXXXXXX 120

Query: 124 XXXXXXXXXXXXXRIFVKEIAELAVKKRATVERIKALXXXXXXXXXXXXXSLPALFITLL 183
           XXXXXXXXXXXXX     EI ELA++KRA +ERI+ L             +L A+  T++
Sbjct: 121 XXXXXXXXXXXXXXXXXXEITELAMRKRARIERIRVLKKMREAKSSSWNSTLYAMAFTVV 180

Query: 184 FFVIIIFQGMSA--IGSVRVSESPVASGGGSAGLI-VQNLPQSSPNVNGAQSHVLDFAGN 241
           FF+I++FQG+ +   GS+ +  SP  +   S  LI VQ    S+   +G  S     AG 
Sbjct: 181 FFLILVFQGICSRNSGSMYLGWSPEPAVTASEDLISVQFYKNSAYEGDGPGSSSPSLAGG 231

The following BLAST results are available for this feature:

BLAST of Carg11170-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983577.1	1.1e-86	87.11	uncharacterized protein LOC111482138 [Cucurbita maxima]	[more]
XP_023527773.1	1.5e-86	87.11	uncharacterized protein LOC111790892 [Cucurbita pepo subsp. pepo]	[more]
XP_022934397.1	1.3e-85	86.33	uncharacterized protein LOC111441585 [Cucurbita moschata]	[more]
XP_008447470.1	9.4e-73	73.38	PREDICTED: uncharacterized protein LOC103489909 [Cucumis melo] >XP_008447471.1 P...	[more]
XP_004147994.1	1.2e-72	69.58	PREDICTED: uncharacterized protein LOC101214824 [Cucumis sativus] >XP_011651534....	[more]

BLAST of Carg11170-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11170-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11170-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BHI9\|A0A1S3BHI9_CUCME	6.2e-73	73.38	uncharacterized protein LOC103489909 OS=Cucumis melo OX=3656 GN=LOC103489909 PE=...	[more]
tr\|A0A0A0LB07\|A0A0A0LB07_CUCSA	8.1e-73	69.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G535620 PE=4 SV=1	[more]
tr\|A0A1Q3CU15\|A0A1Q3CU15_CEPFO	2.5e-05	40.35	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_27121 PE=4...	[more]
tr\|A0A2N9IQQ6\|A0A2N9IQQ6_FAGSY	5.5e-05	37.76	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54526 PE=4 SV=1	[more]
tr\|A0A251KRI2\|A0A251KRI2_MANES	1.6e-04	37.04	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G013000 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg11170	Carg11170	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg11170-RA	Carg11170-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11170-RA.exon.1	Carg11170-RA.exon.1	exon
Carg11170-RA.exon.2	Carg11170-RA.exon.2	exon
Carg11170-RA.exon.3	Carg11170-RA.exon.3	exon
Carg11170-RA.exon.4	Carg11170-RA.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11170-RA.five_prime_UTR.1	Carg11170-RA.five_prime_UTR.1	five_prime_UTR
Carg11170-RA.five_prime_UTR.2	Carg11170-RA.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg11170-RA.CDS.1	Carg11170-RA.CDS.1	CDS
Carg11170-RA.CDS.2	Carg11170-RA.CDS.2	CDS
Carg11170-RA.CDS.3	Carg11170-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..256
None	No IPR available	PANTHER	PTHR34188	FAMILY NOT NAMED	coord: 5..229
None	No IPR available	PANTHER	PTHR34188:SF1	SUBFAMILY NOT NAMED	coord: 5..229