Carg10940-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10940-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Chitinase
Location	Cucurbita_argyrosperma_scaffold_034 : 1054561 .. 1059195 (+)
Sequence length	963

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTGGCTTGCGAGCACCGACGACAGGCTCCCGGCTGCCAACATCGACGCTACACTCTCTTCACCCATCTCTTCGCTGGCTACGCTCAACTCAACTCTGATACCTACCAAGTCACCATCGATCCTTCACACCTCATCCTCATCGATCAGTTTTTCTTCAACCGTCAACTCAGCAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGCAGACGCCGCCCTCTTCGCCGCAATGGCTGCAGACCCTACAAAAACCGCGATGCCTTCATCAAGTCCTCCATTGCTGCAGCCAGAGGCGGTGGTTCGATGGCCTCGACCTCCAGTGGCTATACCCTTCTTCTCAGGACCAAATGGACAACTTCAAAACCTTGAATCCATTCGTGGCACCAAGCGGTGGTGGACGATGCCACCAGTTTAAGCCTCCCGCAGCTGCTCCTGGTGGCCACAGTCTCCAATCTTCCCTATCTTCAGAGCAACATTCAATACCCAGCTGATGCAATCAACCAAAAGCTGGACTGGGTGAACCTCCTCTCTTATGACTTTTACACCCCTGACTCCTCCAGGGCCGCCACAGGGCCATCCTCTGCCTTCCACAAATCCCAAGGCCAATGCCCTTTCAGCTAATTTTGGGATCAGGTCGTGGGTGCAGAGCCTCCACAATCTGCCTCACAAGAAAAATCGTGTTTTGGAATTCCCTTCCACGGGTGGGCTTGGAAGCTTTTCAACTCTCACCAGCACACCCTGTTTGCTAAAGCGGATGGAGCCGCCACCGGAGAATACATTGGTCCACACGGCCAAATCTTCTACTCCGATGTGCAGAAATTTATAGAGGACAATCAGGCTGGTGTTGAGGACAAGGACAAGAGCTATCTTGTTGCCTACGCTTATTACGAGACAACCTGGATTACCTACGAGAGTGAATCATACACCATTGCCGACAAGATCGCACTCGCAAAGACCGACAAGGTTTATTGGTTACTTTGCTTTCAATCATTGCAGCCGATGACGCTTCTAACACTCTTGCTAATGCTGCCAAATCCAATTGGTGATATCTTATTGTTGAACCCTCCAATAAGAGCTATGCTCCTGCTGCTCTATGCTCTATGTCTCTATGTCTCTATGTCTCTATGTCTCTATGTCTCTGTCTCTGTCTTTTTTAATTATGTTGTACCTTGTGTGGTGTTCTAAGGGTTGAATAAAGTTTGTGGCGTGTTCCTTCCTACCAACATCCTTTCTCCATTCATTTCCATGAGTGTTCCATTACTTCTCTCTCACTTCCTTTTAGGAATCTTGTGTTGAAGATGTGTGCATGTGGCTCGAGTATTTCATGAAATAATCAATAAGTAACTCCTTAGAAAAGACCCACATAATATTATAGTGAACATAAATATCGAATTCATACTTTTATGACATAAAGGAAAAGTATCGGAGTGCAAATGACATACAAATATGCACGAGGTCTCATAACTTATGTTACCCGTCATATTATGTAATGTGAAAATACGTTTCAATTCCATAAACATTTCATAACATAACTCAATTATGCTACGTGTACACATAGGCACTATTCAACACTTTCATGACATATAATATTAACATATCAACCATAACTTTTCATAAATTCAGCACTTTCATGACAAATAATACTAACATAACAACCATAACTTTTCATAACATCATCCGTCAATATAATCCATGCATCACATAGTCATATCACATAAAATATGATACATGTAGGGGCTATAGGGCACGCACCATCATACAAAACACATAATAAGCTAATTCCAATTGTAAAGTCACTTACCTCGATGGCCTTGGCCAAAGTTACTATGTATGCATGCGAAGCCGAAACTGGAGCTACGATGTTGAGCCGAATGTGCATGCGGCCAGCGTTCTCTCCTGGGATGTGGGCTGGAGTGAGGATTAAAACAACAGGCTATTGAGTCGCAAGTATACGAGGAGACCCGACCCGAATCCAACAACTTATCTTCTTCCTTACCCGAAAAACAACGAAACCCTAATTGATCTGCCTCCCTGATTTTCGACGACGCGTTGCAGTCTCCTCCGCTTCAGACGATCACGTAGCATTCTCGACGCAGATTTTCGACGAGCACATAGTGATCCCGATGCCAATACCTTACTTCCATTTAATTCTTGCTCCAAAAATAGCAACTCTAACGTTTTGAGAATCATAGCATACATATTAAATTACATAACTAAATCCCCTATTCTTCTATAGTATTCACAAAATCATGAAAATCAGGTGTAAATGCATACTTCAAACATTCATCATGCTTACAATAATCAATTTCAGTCAATTCACTTCAAATTCCATTGTTGTCGTCGTTAAACAATCGTACAGTTGATGTCCTTTTTTTTGTGGATATATTACTAAATCGATTGGGGAGAAGAACAAAACATTCTTTATAAGGAAAAACCCATAGAGAACAATATCGACTAGCTGTAAGCTTGAACTGTTGCAATATTAAAATTTGAATCGGAAGAATTATTATATATGTTTTCTCTTTAGTATTTTTTTTTTAGATTATATTTTATTTTTTTAAAAAGAATAACAAACTGAAAAAATTACACTTTCCAATGGGGAATTTTTGTCTCTATTTCTATAAAAATAAATAGAAAATTTCGCGAAAATGGAGACGAAGGAGCCTTCCCCGTCCCTGCTAGCCCCATTATTTTTTGAAACAACTTAAAAAAGACATATAAAAAACTATATTAATTTAAAAACAATTACAAGATGACTTTAACTCTCCCACGATTCTTAAATATGGATAGAACTTCAACCCATACAATATACACATAGAATCAAAAAGACGTTGGATAAAACTTGCAAACTATACGTAATTTTCGCACATTTTAAAAGGTGCCATTGGACATTTATAAAATAAAATAAATGGAGCAGCTAATAAGACAAAACAAAGTTATATATATATATATAGTATTTATCAATGTTCAATCCCATTTACAAATTTCAAACCCATTAAAAAATTATATCCATTTTGAGGTAGTAAGCATATATGTACACAATTAAATAAATATTTGACAACGAAATCTAAATGTCGTTCGTAGCAGGTAATGAATTGGACTTATATTTACGATGAGAAATACGTATTATTGGTTCTTTTACAGATCATTGAAAGCACGTCGTGAAAAGACTGAGTTATGATCAAAATTTGTATCTTTCATAGTGGGAGATGTTAATGTAAAGTTCAAGCTTACTAGATATTGTTTGTTTTGATTTATTGCGTATCGTCATTAGCCTCACGATTTTAAAATGCATATACTAGGTAGAGGTTTCCACAGCCTTATAAGGAATGTTTCACTCCCCTCTCCAACTGATGTGGGATCTCACGGGATCCAGCATCCTCGCTGGCACACTGCCCGATGCCTATCTCTGATAGCATTTGTAACAGCCTAAACAACGTTCTCGTTGGCACACCGCCCGATACCTAGCTCTGATAGCATTTATAAAAGCCCAAACTCACTGCTAACCGATATTGTCTGTTTTAGCCAATTACATATCGTCGTCAGCCTCACAGAATTTAAATGCGTCTATTAAGAGTAGGTTTCCTATTCTTATAAGATTGGTAAGATAATAGTGATATTAAAGAAAAACTAAAGTGGAAAAAATAAAAATGTGATAAAAGTCGGTTCTATGAGGCTTAAACTAATGGATGGAACCCTAATTCAATATTAGAATAATTGAGTGCAACGCGACAAAAGAAAGTTAGATAGAACTAGTTTAATAGAATAGAAAAATAAGAAGGTTAAGGGTTTTAAATTTTAGTCTAACTTATCCACAAATTTTCATTTGTCAATGAATTCGACATCAGCGTGAAGATCGAGTTGTCATTTTCATACTCAGTGAATGTTCATGGAATCACTTAGTTTCGTCACTTTAGGTAGCCTACAAGATAACTCAATAATACAATTGAACTGATATATGCACGATGAGAGCGATCTTAAGGATATGATGATTAGAAAAGACTTATAAAAATTGGAAGTTACTATTTAGAAACTAACAAGATTGCACTTTTTTTTTCCGGTGGCTTAACTATAAGAACTCCACAGTTAAACATGCTTTGTTTGGAGTAATTTTATGTTGTGTGACCGATAGAAAATTTGTATAGGATGGATGTGAGTGAGAAGAAAACATCATAAAAGGATTCGTGTTGGTTTGAGGGAAACGCTTGGGATATCAAATACCGAATTCGGAATGTATTCGGAATGTATGGATGGTTACAATTAGAGAAGGAAGTTAATATTGAAGGTTGAGATTTGAGAGTATTATAAATATGGGATTGGTATGCCATTGTTTTACAACCAACCAACCATTGTTGATTGATATCAGAAGAAGAAAGAAAAATTGTGGATTGAAATGGCCGAGTTTGTGAATGCTGGCTACTGGCTTGCCGGTACCGACGACACGCTCCCGGCATCGAACATCGACGCTACACTTTTCACCCATCTGTTTGTTGGTTACGCTCAACTCAACTCTGATGCTCATGAAGTCACCGTTGATCCTTCACAGCTTATTCTCATCAATCAGTTTTCTTCCACCGTGAAGCTGAGTAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGGAGACACCGCT

mRNA sequence

GTATTGGCTTGCGAGCACCGACGACAGGCTCCCGGCTGCCAACATCGACGCTACACTCTCTTCACCCATCTCTTCGCTGGCTACGCTCAACTCAACTCTGATACCTACCAAGTCACCATCGATCCTTCACACCTCATCCTCATCGATCAGTTTTTCTTCAACCGTCAACTCAGCAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGCAGACGCCGCCCTCTTCGCCGCAATGGCTGCAGACCCTACAAAAACCGCGATGCCTTCATCAAGTCCTCCATTGCTGCAGCCAGAGGCGGTGGTTCGATGGCCTCGACCTCCAGTGGCTATACCCTTCTTCTCAGGACCAAATGGACAACTTCAAAACCTTGAATCCATTCAGCCTCCACAATCTGCCTCACAAGAAAAATCGTGTTTTGGAATTCCCTTCCACGGGTGGGCTTGGAAGCTTTTCAACTCTCACCAGCACACCCTGTTTGCTAAAGCGGATGGAGCCGCCACCGGAGAATACATTGGTCCACACGGCCAAATCTTCTACTCCGATGTGCAGAAATTTATAGAGGACAATCAGGCTGGTGTTGAGGACAAGGACAAGAGCTATCTTGTTGCCTACGCTTATTACGAGACAACCTGGATTACCTACGAGAGTGAATCATACACCATTGCCGACAAGATCGCACTCGCAAAGACCGACAAGAAGAAGAAAGAAAAATTGTGGATTGAAATGGCCGAGTTTGTGAATGCTGGCTACTGGCTTGCCGGTACCGACGACACGCTCCCGGCATCGAACATCGACGCTACACTTTTCACCCATCTGTTTGTTGGTTACGCTCAACTCAACTCTGATGCTCATGAAGTCACCGTTGATCCTTCACAGCTTATTCTCATCAATCAGTTTTCTTCCACCGTGAAGCTGAGTAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGGAGACACCGCT

Coding sequence (CDS)

GTATTGGCTTGCGAGCACCGACGACAGGCTCCCGGCTGCCAACATCGACGCTACACTCTCTTCACCCATCTCTTCGCTGGCTACGCTCAACTCAACTCTGATACCTACCAAGTCACCATCGATCCTTCACACCTCATCCTCATCGATCAGTTTTTCTTCAACCGTCAACTCAGCAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGCAGACGCCGCCCTCTTCGCCGCAATGGCTGCAGACCCTACAAAAACCGCGATGCCTTCATCAAGTCCTCCATTGCTGCAGCCAGAGGCGGTGGTTCGATGGCCTCGACCTCCAGTGGCTATACCCTTCTTCTCAGGACCAAATGGACAACTTCAAAACCTTGAATCCATTCAGCCTCCACAATCTGCCTCACAAGAAAAATCGTGTTTTGGAATTCCCTTCCACGGGTGGGCTTGGAAGCTTTTCAACTCTCACCAGCACACCCTGTTTGCTAAAGCGGATGGAGCCGCCACCGGAGAATACATTGGTCCACACGGCCAAATCTTCTACTCCGATGTGCAGAAATTTATAGAGGACAATCAGGCTGGTGTTGAGGACAAGGACAAGAGCTATCTTGTTGCCTACGCTTATTACGAGACAACCTGGATTACCTACGAGAGTGAATCATACACCATTGCCGACAAGATCGCACTCGCAAAGACCGACAAGAAGAAGAAAGAAAAATTGTGGATTGAAATGGCCGAGTTTGTGAATGCTGGCTACTGGCTTGCCGGTACCGACGACACGCTCCCGGCATCGAACATCGACGCTACACTTTTCACCCATCTGTTTGTTGGTTACGCTCAACTCAACTCTGATGCTCATGAAGTCACCGTTGATCCTTCACAGCTTATTCTCATCAATCAGTTTTCTTCCACCGTGAAGCTGAGTAACCCTGAGGTGAAGACTCTGTTGTCCATTGCAGGAGACACCGCT

Protein sequence

VLACEHRRQAPGCQHRRYTLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAMAADPTKTAMPSSSPPLLQPEAVVRWPRPPVAIPFFSGPNGQLQNLESIQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEYIGPHGQIFYSDVQKFIEDNQAGVEDKDKSYLVAYAYYETTWITYESESYTIADKIALAKTDKKKKEKLWIEMAEFVNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKLSNPEVKTLLSIAGDTA

Homology

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BLAST of Carg10940-RA vs. NCBI nr
Match: XP_022946077.1 (acidic mammalian chitinase-like [Cucurbita moschata] >XP_022946671.1 acidic mammalian chitinase-like [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 5.6e-67
Identity = 164/302 (54.30%), Postives = 180/302 (59.60%), Query Frame = 0


Query: 19  TLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAM 78
           TLFTHLFAGYAQLNS TYQVT+DPS LILIDQF    +LSNPEVKTLLSIAADAA+FAAM
Sbjct: 32  TLFTHLFAGYAQLNSGTYQVTVDPSQLILIDQFSSTVKLSNPEVKTLLSIAADAAVFAAM 91

Query: 79  AADPT-------------------------------------KTAMPS------------ 138
           AADPT                                     KT + S            
Sbjct: 92  AADPTNRDAFIKSSIAAARGGGFDGLDLQWLYPSSQDQMDNFKTLIHSWHQAVVDDATSL 151

Query: 139 SSPPLLQPEAV---------VRWPRPPV----------AIPFF--------SGPNGQLQN 198
           S P LL    V         +++P   +          +  F+        +GP+    N
Sbjct: 152 SLPQLLLVATVSNLPYLQSNIQYPADAINQKLDWVNLLSYDFYTPDSSRAATGPSSAFHN 211

Query: 199 LES------------IQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 233
            ++             Q   +   +K  FGIPFHGWAWKLFNSHQHTLFAKADGAATGEY
Sbjct: 212 PKANALSANFGIRSWAQSLHNLPHKKIVFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 271

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BLAST of Carg10940-RA vs. NCBI nr
Match: XP_023521369.1 (acidic mammalian chitinase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 159/302 (52.65%), Postives = 179/302 (59.27%), Query Frame = 0


Query: 19  TLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAM 78
           TLFTHLFAGYAQLNSDTYQVTIDPS LIL++QF    +LSNP+VKTLLSIAADAA+FAAM
Sbjct: 38  TLFTHLFAGYAQLNSDTYQVTIDPSQLILLNQFSPTVRLSNPDVKTLLSIAADAAVFAAM 97

Query: 79  AADPT-------------------------------------KTAMPS------------ 138
           AADPT                                     KT + S            
Sbjct: 98  AADPTNRDAFIKSSIAAARGGGFDGLDLQWLYPSSQEEMGNFKTLIHSWHQAVVDDATSL 157

Query: 139 SSPPLLQPEAV---------VRWPRPPV----------AIPFF--------SGPNGQLQN 198
           S P LL    V         +++P   +          +  F+        +GP+    N
Sbjct: 158 SLPQLLLVATVSNLPYLQSNIQYPADAINQKLDWVNLLSYDFYTPDSNRAATGPSSAFHN 217

Query: 199 LES------------IQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 233
            ++             Q   +   +K  FGIPFHGWAWKLFNSHQHTLFAKADGAATGEY
Sbjct: 218 PKANALSANFGIRSWAQSLHNLPHKKIVFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 277

[Close]

BLAST of Carg10940-RA vs. NCBI nr
Match: XP_023545402.1 (acidic mammalian chitinase-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 159/302 (52.65%), Postives = 179/302 (59.27%), Query Frame = 0


Query: 19  TLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAM 78
           TLFTHLFAGYAQLNSDTYQVTIDPS LIL++QF    +LSNP+VKTLLSIAADAA+FAAM
Sbjct: 23  TLFTHLFAGYAQLNSDTYQVTIDPSQLILLNQFSPTVRLSNPDVKTLLSIAADAAVFAAM 82

Query: 79  AADPT-------------------------------------KTAMPS------------ 138
           AADPT                                     KT + S            
Sbjct: 83  AADPTNRDAFIKSSIAAARGGGFDGLDLQWLYPSSQEEMGNFKTLIHSWHQAVVDDATSL 142

Query: 139 SSPPLLQPEAV---------VRWPRPPV----------AIPFF--------SGPNGQLQN 198
           S P LL    V         +++P   +          +  F+        +GP+    N
Sbjct: 143 SLPQLLLVATVSNLPYLQSNIQYPADAINQKLDWVNLLSYDFYTPDSNRAATGPSSAFHN 202

Query: 199 LES------------IQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 233
            ++             Q   +   +K  FGIPFHGWAWKLFNSHQHTLFAKADGAATGEY
Sbjct: 203 PKANALSANFGIRSWAQSLHNLPHKKIVFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 262

[Close]

BLAST of Carg10940-RA vs. NCBI nr
Match: XP_022999577.1 (chitotriosidase-1-like [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 158/302 (52.32%), Postives = 173/302 (57.28%), Query Frame = 0


Query: 19  TLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAM 78
           TLFTHLFAGYAQLNSDTYQVT+DPS LILIDQF    +LSNP+VKTLLSIA DAA+FAAM
Sbjct: 32  TLFTHLFAGYAQLNSDTYQVTVDPSQLILIDQFSSTVKLSNPDVKTLLSIAGDAAVFAAM 91

Query: 79  AADPT-------------------------------------KTAMPS------------ 138
           AADPT                                     KT + S            
Sbjct: 92  AADPTNRDAFIKSSIAAARGGGFDGLDLQWLYPSSQDQMANFKTLIHSWHQAVVDDATSV 151

Query: 139 SSPPLLQPEAVVRWP---------------------------RPPVAIPFFSGPNGQLQN 198
           S P LL    V   P                             P +    +GP+    N
Sbjct: 152 SLPQLLLVATVSNLPYLQNNIQYPADAITQKLDWVNLLSYDFYTPDSFRAATGPSSAFHN 211

Query: 199 LES------------IQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 233
            ++             Q   + S +K  FGIPFHGWAWKL NSHQH LFAKADGAA+GEY
Sbjct: 212 PKANALSANFGIRSWAQSLHNLSHKKIVFGIPFHGWAWKLANSHQHALFAKADGAASGEY 271

[Close]

BLAST of Carg10940-RA vs. NCBI nr
Match: XP_022999580.1 (chitotriosidase-1-like [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 157/302 (51.99%), Postives = 176/302 (58.28%), Query Frame = 0


Query: 19  TLFTHLFAGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSIAADAALFAAM 78
           TLFTHLFAGYAQLNSDTYQVT+DPS LILIDQF    +LSNP VKTLLSIA DAA+FAAM
Sbjct: 32  TLFTHLFAGYAQLNSDTYQVTVDPSQLILIDQFSSTVKLSNPGVKTLLSIAGDAAVFAAM 91

Query: 79  AADPT-------------------------------------KTAMPS------------ 138
           A DPT                                     KT + S            
Sbjct: 92  AVDPTNRDAFIKSSIAAARGGGFDGLDLQWLYPSSQDQMANFKTLIQSWHQAVVDDATSV 151

Query: 139 SSPPLLQPEAV---------VRWPRPPV----------AIPFF--------SGPNGQLQN 198
           S P LL    V         +++P   +          +  F+        +GP+    N
Sbjct: 152 SLPQLLLVATVSNLPYLQNNIQYPADAITQNLDWVNLLSYDFYTPDSFRDATGPSSAFHN 211

Query: 199 LES------------IQPPQSASQEKSCFGIPFHGWAWKLFNSHQHTLFAKADGAATGEY 233
            ++             Q   + S +K  FGIPFHGWAWKL NSHQH LFAKADGAA+GEY
Sbjct: 212 PKANALSANFGIRSWAQSLNNLSHKKIVFGIPFHGWAWKLANSHQHALFAKADGAASGEY 271

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BLAST of Carg10940-RA vs. TAIR10
Match: AT4G19750.1 (Glycosyl hydrolase family protein with chitinase insertion domain)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-13
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 246 VNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKL 305
           V A YW+   ++  PA NID+T FTHLF  +A ++S  HEVT+  +    ++ F+ TVK 
Sbjct: 14  VKASYWVVKPENDFPAGNIDSTRFTHLFCAFADVDSSTHEVTISAANSCQVSSFTHTVKD 73

Query: 306 SNPEVKTLLSIAGDTA 322
            N +V+TLLSI G  A
Sbjct: 74  KNTDVQTLLSIGGKDA 89

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BLAST of Carg10940-RA vs. TAIR10
Match: AT4G19800.1 (Glycosyl hydrolase family protein with chitinase insertion domain)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 243 AEFVNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSST 302
           ++ V A YW   TD   PA++ID++LFTHLF  +A L ++++E+T+        + F+ T
Sbjct: 4   SDVVKASYWFPATD--FPATDIDSSLFTHLFCTFADLEAESYEITIATWNQAPFHAFTET 63

Query: 303 VKLSNPEVKTLLSIAGDTA 322
           V+  NP VKTLLSI G  A
Sbjct: 64  VQQRNPHVKTLLSIGGGNA 80

[Close]

BLAST of Carg10940-RA vs. TAIR10
Match: AT4G19810.1 (Glycosyl hydrolase family protein with chitinase insertion domain)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-11
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 246 VNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKL 305
           V A YW   ++   P ++ID++LFTHLF  +A LNS  ++VTV  +     + F+ TV+ 
Sbjct: 28  VKASYWFPASE--FPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQR 87

Query: 306 SNPEVKTLLSIAGDTA 322
            NP VKTLLSI G  A
Sbjct: 88  RNPSVKTLLSIGGGIA 101

[Close]

BLAST of Carg10940-RA vs. TAIR10
Match: AT4G19730.1 (Glycosyl hydrolase superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 246 VNAGYWLAG---TDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSST 305
           V A YW       D    A  I + LFTHLF  +A L++++H+V V  +   + + F+ T
Sbjct: 14  VKASYWFPDGETQDPITSAETIPSALFTHLFCAFADLDANSHKVFVSQAHEFIFSTFTET 73

Query: 306 VKLSNPEVKTLLSIAGDTA 322
           VK+ NP+VKTLLSI G  A
Sbjct: 74  VKIRNPQVKTLLSIGGKNA 92

[Close]

BLAST of Carg10940-RA vs. TAIR10
Match: AT4G19760.1 (Glycosyl hydrolase family protein with chitinase insertion domain)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-10
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 0


Query: 221 IADKIALAKTDKKKKEKLWIEMAEFVNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLN 280
           +AD+    +T+   K   W    +  +      GT    P+S ID+TLFTHLF  +A ++
Sbjct: 1   MADQTQFLRTNSIVKASYWFPDGKSQSPECLSQGT----PSSFIDSTLFTHLFCAFADVD 60

Query: 281 SDAHEVTVDPSQLILINQFSSTVKLSNPEVKTLLSIAGDTA 322
           S  HEVT+  +     + F+ TVK  N +V+TLLSI G  A
Sbjct: 61  SSTHEVTISAANSYQFSSFTETVKEKNTDVQTLLSIGGKDA 97

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BLAST of Carg10940-RA vs. Swiss-Prot
Match: sp|O81862|CHIC_ARATH (Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-10
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 246 VNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKL 305
           V A YW   ++   P ++ID++LFTHLF  +A LNS  ++VTV  +     + F+ TV+ 
Sbjct: 28  VKASYWFPASE--FPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQR 87

Query: 306 SNPEVKTLLSIAGDTA 322
            NP VKTLLSI G  A
Sbjct: 88  RNPSVKTLLSIGGGIA 101

[Close]

BLAST of Carg10940-RA vs. TrEMBL
Match: tr|A0A0A0LL51|A0A0A0LL51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008760 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 94/308 (30.52%), Postives = 124/308 (40.26%), Query Frame = 0


Query: 20  LFTHLF-AGYAQLNSDTYQVTIDPSHLILIDQFFFNRQLSNPEVKTLLSI-------AAD 79
           LFTHLF  G   +N  TY+++I  S   LIDQF    +  N EVKTLLSI         D
Sbjct: 29  LFTHLFCGGCVSINPQTYELSISNSTKPLIDQFSKAIKEKNHEVKTLLSINESEDDAKGD 88

Query: 80  AALFAAMAADPTKTA-----------------------MPSSSPPLLQPEAVV------- 139
              FAAMA D +  A                        PSS   +   EA++       
Sbjct: 89  HGRFAAMARDSSNRATFIRSLISKARESNFDGVDLQWLYPSSREEMANFEALILECYNDF 148

Query: 140 -------RWPRPPVA-----IPFFSGPNGQLQNLESIQ--------------PPQSASQE 199
                    PR  +      +P+    +G +  +E+++               P S+S E
Sbjct: 149 VKEGKECHKPRLILVATVFYLPYIGKDDGVMYPIETMRRTLDWVNVIAYDIFTPISSSNE 208

Query: 200 ---------------------------------KSCFGIPFHGWAWKLFNSHQHTLFAKA 230
                                            +  FG+PFHGWAWKL  S+ H +F+ A
Sbjct: 209 TGPSSALFNNPSKATLGGYFGIRTWIEKGMPTKRMIFGLPFHGWAWKLERSYNHNVFSPA 268

[Close]

BLAST of Carg10940-RA vs. TrEMBL
Match: tr|Q8S2V9|Q8S2V9_MOMCH (Class V chitinase OS=Momordica charantia OX=3673 GN=Chi5 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 246 VNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKL 305
           VN GYWL+ T   LPASNIDATL+THLF GY ++++ +HEVT+  ++   ++ FS  VK+
Sbjct: 7   VNGGYWLSSTAGKLPASNIDATLYTHLFCGYGEIDATSHEVTIPSTE---VSHFSEKVKV 66

Query: 306 SNPEVKTLLSIAGDT 321
           SNP VKTLLSI GD+
Sbjct: 67  SNPSVKTLLSIRGDS 78

[Close]

BLAST of Carg10940-RA vs. TrEMBL
Match: tr|A0A1S4DZW4|A0A1S4DZW4_CUCME (uncharacterized protein LOC107991275 OS=Cucumis melo OX=3656 GN=LOC107991275 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-13
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 139 FGIPFHGWAWKLFNSHQHTLFAKADGAATGEYIGPHGQIFYSDVQKFIEDNQAGVEDK-- 198
           FG+PFHGWAWKL  S+ H +F+ A G A G+ I   G I Y +++KFI DN     +   
Sbjct: 3   FGLPFHGWAWKLERSYNHNVFSPAQGPAQGQNISMEGLIEYRNIKKFIVDNNNNATNVLI 62

Query: 199 DKSYLVAYAYYETTWITYESESYTIADKIALAK 230
           D  Y +AY + + TWI YESE  +I  KIA  K
Sbjct: 63  DHKYPIAYTHCDNTWIAYESEE-SITAKIAKVK 94

[Close]

BLAST of Carg10940-RA vs. TrEMBL
Match: tr|A0A1R3J803|A0A1R3J803_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18759 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 237 KLWIEMAEFVNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILI 296
           +L    A+ V AGYW AG++   P SNID+TLFTHLF  +A LNS  ++VT+  +     
Sbjct: 5   QLQFSSAQNVRAGYWSAGSE--FPVSNIDSTLFTHLFCAFADLNSQTYQVTISSANQAQF 64

Query: 297 NQFSSTVKLSNPEVKTLLSIAGDTA 322
           + F+ TV+  NP VKTLLSI G ++
Sbjct: 65  STFTKTVQQKNPSVKTLLSIGGGSS 87

[Close]

BLAST of Carg10940-RA vs. TrEMBL
Match: tr|A0A068UNX2|A0A068UNX2_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030830001 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 246 VNAGYWLAGTDDTLPASNIDATLFTHLFVGYAQLNSDAHEVTVDPSQLILINQFSSTVKL 305
           VNAGYW    D  +  S+ID+TLFTHLF  +A L+ +++EVT+  S     +QF+ TV+L
Sbjct: 28  VNAGYWF--PDSGIEISDIDSTLFTHLFCAFADLDPESNEVTISASNAGPFSQFTETVQL 87

Query: 306 SNPEVKTLLSIAG 319
            NP VKTLLSI G
Sbjct: 88  KNPSVKTLLSIGG 98

The following BLAST results are available for this feature:

BLAST of Carg10940-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946077.1	5.6e-67	54.30	acidic mammalian chitinase-like [Cucurbita moschata] >XP_022946671.1 acidic mamm...	[more]
XP_023521369.1	1.2e-64	52.65	acidic mammalian chitinase-like [Cucurbita pepo subsp. pepo]	[more]
XP_023545402.1	1.2e-64	52.65	acidic mammalian chitinase-like, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022999577.1	2.0e-64	52.32	chitotriosidase-1-like [Cucurbita maxima]	[more]
XP_022999580.1	1.3e-63	51.99	chitotriosidase-1-like [Cucurbita maxima]	[more]

BLAST of Carg10940-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19750.1	2.6e-13	44.74	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19800.1	6.3e-12	43.04	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19810.1	1.8e-11	44.74	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19730.1	1.2e-10	41.77	Glycosyl hydrolase superfamily protein	[more]
AT4G19760.1	2.0e-10	36.63	Glycosyl hydrolase family protein with chitinase insertion domain	[more]

BLAST of Carg10940-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O81862\|CHIC_ARATH	3.3e-10	44.74	Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1	[more]

BLAST of Carg10940-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LL51\|A0A0A0LL51_CUCSA	1.0e-16	30.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008760 PE=4 SV=1	[more]
tr\|Q8S2V9\|Q8S2V9_MOMCH	3.3e-15	57.33	Class V chitinase OS=Momordica charantia OX=3673 GN=Chi5 PE=2 SV=1	[more]
tr\|A0A1S4DZW4\|A0A1S4DZW4_CUCME	2.4e-13	46.24	uncharacterized protein LOC107991275 OS=Cucumis melo OX=3656 GN=LOC107991275 PE=...	[more]
tr\|A0A1R3J803\|A0A1R3J803_9ROSI	7.6e-12	47.06	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_18759 PE=4 SV=1	[more]
tr\|A0A068UNX2\|A0A068UNX2_COFCA	2.5e-10	52.05	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00030830001 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR017853	Glycoside_hydrolase_SF
IPR029070	Chitinase_insertion_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10940	Carg10940	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10940-RA	Carg10940-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10940-RA.exon.1	Carg10940-RA.exon.1	exon
Carg10940-RA.exon.2	Carg10940-RA.exon.2	exon
Carg10940-RA.exon.3	Carg10940-RA.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10940-RA.CDS.1	Carg10940-RA.CDS.1	CDS
Carg10940-RA.CDS.2	Carg10940-RA.CDS.2	CDS
Carg10940-RA.CDS.3	Carg10940-RA.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.20.20.80		coord: 131..142 e-value: 3.1E-14 score: 55.1 coord: 215..230 e-value: 3.1E-14 score: 55.1
None	No IPR available	GENE3D	G3DSA:3.20.20.80		coord: 244..321 e-value: 9.5E-12 score: 46.6 coord: 19..85 e-value: 1.3E-7 score: 33.3
None	No IPR available	PANTHER	PTHR11177	CHITINASE	coord: 19..84
None	No IPR available	PANTHER	PTHR11177:SF219	CHITINASE-LIKE PROTEIN-RELATED	coord: 19..84
None	No IPR available	PANTHER	PTHR11177	CHITINASE	coord: 246..321 coord: 131..218
None	No IPR available	PANTHER	PTHR11177:SF219	CHITINASE-LIKE PROTEIN-RELATED	coord: 246..321 coord: 131..218
IPR029070	Chitinase insertion domain superfamily	GENE3D	G3DSA:3.10.50.10		coord: 143..214 e-value: 3.1E-14 score: 55.1
IPR029070	Chitinase insertion domain superfamily	SUPERFAMILY	SSF54556	Chitinase insertion domain	coord: 145..214
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	SSF51445	(Trans)glycosidases	coord: 248..319