Carg10124-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10124-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Carboxyl-terminal-processing protease
Location	Cucurbita_argyrosperma_scaffold_039 : 537603 .. 539590 (-)
Sequence length	600

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATTATGTCCTTTGCAGGTGCTGTGAAAGAAGCGATTGATTATTTAAGGAGTAACAAAGTTAATGCCTTTGTACTTGACCTTCGGGATAATAGGTGATTAGTTTTCACTTTTCAGCACTTAAAGTTTTCCTTTTAGCACACCTCTTGAACTGTGGAACTTGTTGCAGTGGTGGTCTTTTTCCAGAAGGAGTTGAGATTGCCAAGATTTGGTACGTGCTATTTGGGTATATTATTTGGTGTGTTATTCATGCTGTTAGTTTCATTAATGGTGTAATATGACACAATGGATAATCCAAGTATATTACATCTGTAAAATTATCACTTTGCATTTAGGGAAAGGAGGTCTCTTGTAGCAATAAAAAGGCTAGACAAGTTTGGAACTTGATGTCGTAAAGAGATCGTCTCAAATGGAAATCAAATTCTATGGGAGGTAGGAAAGTTGCACTTAGAGTTAAAACTGAATCAACCAACGCCTCTTTTTGAAGCGTGTGATCAAAGAAGCAAAGGAATAAGATTCAAAGGGAATAATCAATCCCAAATTTTCTCCAAAAATGAATGCGAGATCCATTTCCTGTTGAAAACTAAAGAACTTGCTTTGTTCAGCAATGGGAAATGGATTCCCATATGAGATCCCACATCGGTTAGAGAAGGGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGTAGACACATTTTAAATGTTCTTTTGAGGGGAAGCCTAGAAGGGAGTTACATCCCAGGGCTCTTAGATGTGCTTTTTAGAAACCACATGTTCTATCGGCTGACAAACATATTTATCATGATAACCTTGTGGGACAAAGAATCTGACTATTGAAGGGAAAGTTCCATTACCACTTGGCTAGGTCAGGTAGTTTCCTATATGTTTGATTCCTTGTTCCTGCCCTCGTTAAACCCCTAGTAGAATGGTCTGTCTTTTTAAGTTTGTTTGGATATAGTTTAATGAATCAGTAGACTAATATTATTAGGTGACATTGATGTTGTGCATGTGTGAGATCTATCATTTCCATCTTTTCTCTTTTCCATTGATCATTTCATTTGCGATTTGGTCGGATCTCAATAATTTATCATACTTTTAACATAGTACTTGACATACAAGGATTCAAAAGTTGACAGTGAATCATTGTAGCTAGTAGAATGTCCTCTTAACGCTCTGCAGCCTGGTTTCATATTATCTGTTCTTATTCAGGTTGGACAAAGGTGTTATCGTGTATATTTGCGACAGTCGTGGTGTCCGAGATATATATGATTCAGATGGAAGTAGCTCTATAGCAGCTTCAGAACCATTAGCTGTGTTGGTAAACTTTCAGCTCCATTCTTTCTCTAAATAAAGGCTCCACCAAGTATCTCATCTATTCTTACTATTTACTTCATCATCACGACCTCCTTTTCTATGGATTCCTCTAAAGACTGCTTTAATATTTCTGTTACAATCACGATTATCCTCTTATTCTGCATTCTTTAAACTTTATTTAAACTTTACGAAAAATGTAAGCCTTTTAAACTTTATTTTGATCGTTTGAACATAACGCTTATATTAGGTGAACAAGGGAACTGCTAGTGCGAGTGAAATACTAGCCGGGGCATTGAAGGACAACAAGCGTGCTATATTATTTGGAGAACCAACCTATGGGAAAGGGTAAGAACTTTTGGCTGCGCCCCAAAACATGATTAGATGTGGTATTATCCAATTTCCTTACAAGAATTCACATCCTTCTCTGCAGCAAGATTCAGTCAGTCTTTAAACTATCAGACGGTTCTGGCTTGGCTGTGACAGTGGCTCGTTACGAGACACCAGCTCACATCGACATCGACAAGGTCTCTCTATCTCTTATCCCTACGAACACTTCTCAGGAAGACAACGTTCTTAACACGCCTGGATATTCTGCAGGTAGGAGTGATTCCAGACCGTCCGCTACCAGCATCATTCCCAAAGGATGGAGATGGTTTCTGTAG

mRNA sequence

ATGAGAATTATGTCCTTTGCAGGTGCTGTGAAAGAAGCGATTGATTATTTAAGGAGTAACAAAGTTAATGCCTTTGTACTTGACCTTCGGGATAATAGTGGTGGTCTTTTTCCAGAAGGAGTTGAGATTGCCAAGATTTGGTTGGACAAAGGTGTTATCGTGTATATTTGCGACAGTCGTGGTGTCCGAGATATATATGATTCAGATGGAAGTAGCTCTATAGCAGCTTCAGAACCATTAGCTGTGTTGGTGAACAAGGGAACTGCTAGTGCGAGTGAAATACTAGCCGGGGCATTGAAGGACAACAAGCGTGCTATATTATTTGGAGAACCAACCTATGGGAAAGGAATTCACATCCTTCTCTGCAGCAAGATTCAGTCAGTCTTTAAACTATCAGACGGTTCTGGCTTGGCTGTGACAGTGGCTCGTTACGAGACACCAGCTCACATCGACATCGACAAGGTCTCTCTATCTCTTATCCCTACGAACACTTCTCAGGAAGACAACGTTCTTAACACGCCTGGATATTCTGCAGGTAGGAGTGATTCCAGACCGTCCGCTACCAGCATCATTCCCAAAGGATGGAGATGGTTTCTGTAG

Coding sequence (CDS)

ATGAGAATTATGTCCTTTGCAGGTGCTGTGAAAGAAGCGATTGATTATTTAAGGAGTAACAAAGTTAATGCCTTTGTACTTGACCTTCGGGATAATAGTGGTGGTCTTTTTCCAGAAGGAGTTGAGATTGCCAAGATTTGGTTGGACAAAGGTGTTATCGTGTATATTTGCGACAGTCGTGGTGTCCGAGATATATATGATTCAGATGGAAGTAGCTCTATAGCAGCTTCAGAACCATTAGCTGTGTTGGTGAACAAGGGAACTGCTAGTGCGAGTGAAATACTAGCCGGGGCATTGAAGGACAACAAGCGTGCTATATTATTTGGAGAACCAACCTATGGGAAAGGAATTCACATCCTTCTCTGCAGCAAGATTCAGTCAGTCTTTAAACTATCAGACGGTTCTGGCTTGGCTGTGACAGTGGCTCGTTACGAGACACCAGCTCACATCGACATCGACAAGGTCTCTCTATCTCTTATCCCTACGAACACTTCTCAGGAAGACAACGTTCTTAACACGCCTGGATATTCTGCAGGTAGGAGTGATTCCAGACCGTCCGCTACCAGCATCATTCCCAAAGGATGGAGATGGTTTCTGTAG

Protein sequence

MRIMSFAGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIYDSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQSVFKLSDGSGLAVTVARYETPAHIDIDKVSLSLIPTNTSQEDNVLNTPGYSAGRSDSRPSATSIIPKGWRWFL

Homology

[Close]

BLAST of Carg10124-RA vs. NCBI nr
Match: XP_022959504.1 (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 355 SGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 414

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG       KIQ
Sbjct: 415 DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG-------KIQ 474

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 475 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 498

[Close]

BLAST of Carg10124-RA vs. NCBI nr
Match: XP_022959503.1 (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 357 SGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 416

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG       KIQ
Sbjct: 417 DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG-------KIQ 476

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 477 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 500

[Close]

BLAST of Carg10124-RA vs. NCBI nr
Match: XP_023006378.1 (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_023006379.1 carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 357 SGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 416

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG       KIQ
Sbjct: 417 DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG-------KIQ 476

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 477 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 500

[Close]

BLAST of Carg10124-RA vs. NCBI nr
Match: XP_023006380.1 (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 355 SGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 414

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG       KIQ
Sbjct: 415 DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG-------KIQ 474

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 475 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 498

[Close]

BLAST of Carg10124-RA vs. NCBI nr
Match: XP_023548679.1 (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 141/151 (93.38%), Postives = 143/151 (94.70%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 357 SGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 416

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG       KIQ
Sbjct: 417 DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG-------KIQ 476

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 477 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 500

[Close]

BLAST of Carg10124-RA vs. TAIR10
Match: AT4G17740.1 (Peptidase S41 family protein)

HSP 1 Score: 244.2 bits (622), Expect = 6.8e-65
Identity = 123/152 (80.92%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           + AV+EAI+ LR N VNAFVLDLRDNSGG FPEG+EIAK WLDKGVIVYICDSRGVRDIY
Sbjct: 334 SSAVREAIETLRGNNVNAFVLDLRDNSGGSFPEGIEIAKFWLDKGVIVYICDSRGVRDIY 393

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           D+DGS++IA SEPLAVLVNKGTASASEILAGALKDNKRA+++GEPTYGKG       KIQ
Sbjct: 394 DTDGSNAIATSEPLAVLVNKGTASASEILAGALKDNKRALVYGEPTYGKG-------KIQ 453

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSLS 159
           SVF+LSDGSGLAVTVARYETPAH DIDKV ++
Sbjct: 454 SVFELSDGSGLAVTVARYETPAHTDIDKVGVT 478

[Close]

BLAST of Carg10124-RA vs. TAIR10
Match: AT3G57680.1 (Peptidase S41 family protein)

HSP 1 Score: 122.5 bits (306), Expect = 3.0e-28
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLD-KGVIVYICDSRGVRDI 66
           A  ++ A+  + +  V +++LDLR+N GGL   G+++A++WLD    +VY  D  GV   
Sbjct: 324 ASDMENAVHEMENQDVQSYILDLRNNPGGLVRAGLDVAQLWLDGDETLVYTIDREGVTSP 383

Query: 67  YDSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKI 126
            +     ++   +PL VLVN+G+ASASEILAGAL DN RAIL G  T+GKG       KI
Sbjct: 384 INMINGHAV-THDPLVVLVNEGSASASEILAGALHDNGRAILVGNRTFGKG-------KI 443

Query: 127 QSVFKLSDGSGLAVTVARYETPAHIDIDKVSLS 159
           QS+ +L+DGS L VTVA+Y +P+  +ID+V ++
Sbjct: 444 QSITELNDGSALFVTVAKYLSPSLHEIDQVGIA 468

[Close]

BLAST of Carg10124-RA vs. TAIR10
Match: AT5G46390.2 (Peptidase S41 family protein)

HSP 1 Score: 113.2 bits (282), Expect = 1.8e-25
Identity = 68/143 (47.55%), Postives = 88/143 (61.54%), Query Frame = 0


Query: 13  AIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRG--VRDIYDSDG 72
           A+  L     + FV+DLRDN GGL   G+E AK++LD+G  V     R    +    SD 
Sbjct: 326 AMKRLLDKGASYFVMDLRDNLGGLVQAGIETAKLFLDEGDTVIYTAGRDPEAQKTVVSDK 385

Query: 73  SSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQSVFK 132
              I A  PL V+VN  TASASEI+A AL DN +A+L GE TYGKG+       IQSV++
Sbjct: 386 KPLITA--PLIVMVNNRTASASEIVASALHDNCKAVLVGERTYGKGL-------IQSVYE 445

Query: 133 LSDGSGLAVTVARYETPAHIDID 154
           L DGSG+ VT+ +Y TP H+DI+
Sbjct: 446 LRDGSGVVVTIGKYVTPNHMDIN 459

[Close]

BLAST of Carg10124-RA vs. Swiss-Prot
Match: sp|O23614|CTPA2_ARATH (Carboxyl-terminal-processing peptidase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CTPA2 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-63
Identity = 123/152 (80.92%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           + AV+EAI+ LR N VNAFVLDLRDNSGG FPEG+EIAK WLDKGVIVYICDSRGVRDIY
Sbjct: 334 SSAVREAIETLRGNNVNAFVLDLRDNSGGSFPEGIEIAKFWLDKGVIVYICDSRGVRDIY 393

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           D+DGS++IA SEPLAVLVNKGTASASEILAGALKDNKRA+++GEPTYGKG       KIQ
Sbjct: 394 DTDGSNAIATSEPLAVLVNKGTASASEILAGALKDNKRALVYGEPTYGKG-------KIQ 453

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSLS 159
           SVF+LSDGSGLAVTVARYETPAH DIDKV ++
Sbjct: 454 SVFELSDGSGLAVTVARYETPAHTDIDKVGVT 478

[Close]

BLAST of Carg10124-RA vs. Swiss-Prot
Match: sp|O04073|CTPA_TETOB (C-terminal processing peptidase, chloroplastic OS=Tetradesmus obliquus OX=3088 GN=ctpA PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.1e-39
Identity = 83/150 (55.33%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 9   AVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIYDS 68
           A ++A   L    V   VLD+R+N GGLFP GV +A++ +D+G +V I DS+G+RDIY +
Sbjct: 292 AAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSA 351

Query: 69  DGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQSV 128
           DG +SI ++ PL VLVN+GTASASE+LAGALKD+KR ++ GE T+GKG+       IQ+V
Sbjct: 352 DG-NSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERTFGKGL-------IQTV 411

Query: 129 FKLSDGSGLAVTVARYETPAHIDIDKVSLS 159
             LSDGSG+AVTVARY+TPA +DI+K+ +S
Sbjct: 412 VDLSDGSGVAVTVARYQTPAGVDINKIGVS 433

[Close]

BLAST of Carg10124-RA vs. Swiss-Prot
Match: sp|Q55669|CTPA_SYNY3 (Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=ctpA PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.0e-34
Identity = 79/161 (49.07%), Postives = 111/161 (68.94%), Query Frame = 0


Query: 1   MRIMSF-AGAVKE---AIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYI 60
           +R+  F A A KE   A+  L     + ++LDLR+N GGL   G++IA++WL +  IVY 
Sbjct: 222 IRLSQFSANAYKEVAHALHQLEEQGADGYILDLRNNPGGLLQAGIDIARLWLPESTIVYT 281

Query: 61  CDSRGVRDIYDSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG 120
            + +G ++ + ++G +  A   PL VLVN+GTASASEILAGAL+DN+RA L GE T+GKG
Sbjct: 282 VNRQGTQESFTANGEA--ATDRPLVVLVNQGTASASEILAGALQDNQRATLVGEKTFGKG 341

Query: 121 IHILLCSKIQSVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           +       IQS+F+LSDG+G+AVTVA+YETP H DI K+ +
Sbjct: 342 L-------IQSLFELSDGAGIAVTVAKYETPQHHDIHKLGI 373

[Close]

BLAST of Carg10124-RA vs. Swiss-Prot
Match: sp|P42784|CTPA_SYNP2 (Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=ctpA PE=3 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-33
Identity = 77/161 (47.83%), Postives = 110/161 (68.32%), Query Frame = 0


Query: 1   MRIMSFAGAVK----EAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYI 60
           +R+  F+   K    ++++ L+    + +VLDLR+N GGL   G+EIA++WLD+  IVY 
Sbjct: 219 IRLNQFSANAKTEIIKSLNQLQKQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYT 278

Query: 61  CDSRGVRDIYDSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKG 120
            + +G+ + Y + G     A  PL VLVN+ TASASEILAGAL+DN RA+L GE T+GKG
Sbjct: 279 VNRQGIFESYSAVGQPLTDA--PLVVLVNQATASASEILAGALQDNGRAMLVGEKTFGKG 338

Query: 121 IHILLCSKIQSVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           +       IQS+F+L DG+G+AVTVA+YETP H DI+K+ +
Sbjct: 339 L-------IQSLFELPDGAGMAVTVAKYETPLHHDINKLGI 370

[Close]

BLAST of Carg10124-RA vs. Swiss-Prot
Match: sp|F4J3G5|CTPA3_ARATH (Carboxyl-terminal-processing peptidase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CTPA3 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.4e-27
Identity = 68/153 (44.44%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLD-KGVIVYICDSRGVRDI 66
           A  ++ A+  + +  V +++LDLR+N GGL   G+++A++WLD    +VY  D  GV   
Sbjct: 324 ASDMENAVHEMENQDVQSYILDLRNNPGGLVRAGLDVAQLWLDGDETLVYTIDREGVTSP 383

Query: 67  YDSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKI 126
            +     ++   +PL VLVN+G+ASASEILAGAL DN RAIL G  T+GKG       KI
Sbjct: 384 INMINGHAV-THDPLVVLVNEGSASASEILAGALHDNGRAILVGNRTFGKG-------KI 443

Query: 127 QSVFKLSDGSGLAVTVARYETPAHIDIDKVSLS 159
           QS+ +L+DGS L VTVA+Y +P+  +ID+V ++
Sbjct: 444 QSITELNDGSALFVTVAKYLSPSLHEIDQVGIA 468

[Close]

BLAST of Carg10124-RA vs. TrEMBL
Match: tr|A0A0A0LIE8|A0A0A0LIE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G165670 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.2e-67
Identity = 136/151 (90.07%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAID LRSN VNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 359 SGAVKEAIDSLRSNSVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 418

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGS++IAASEPLAVLVNKGTASASEILAGALKDNKRA+LFGEPTYGKG       KIQ
Sbjct: 419 DSDGSNTIAASEPLAVLVNKGTASASEILAGALKDNKRAMLFGEPTYGKG-------KIQ 478

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 479 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 502

[Close]

BLAST of Carg10124-RA vs. TrEMBL
Match: tr|A0A1S3CDJ4|A0A1S3CDJ4_CUCME (carboxyl-terminal-processing peptidase 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499481 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 8.8e-67
Identity = 136/151 (90.07%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAID LRSN VNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 357 SGAVKEAIDSLRSNSVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 416

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           DSDGS++IAASEPLAVLVNKGTASASEILAGALKDNKRA LFGEPTYGKG       KIQ
Sbjct: 417 DSDGSNTIAASEPLAVLVNKGTASASEILAGALKDNKRATLFGEPTYGKG-------KIQ 476

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVFKLSDGSGLAVTVARYETPAHIDIDKV +
Sbjct: 477 SVFKLSDGSGLAVTVARYETPAHIDIDKVGV 500

[Close]

BLAST of Carg10124-RA vs. TrEMBL
Match: tr|A0A2I4G2E1|A0A2I4G2E1_9ROSI (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109004104 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.4e-66
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAID LRSN VNAFVLDLRDNSGGLFPEG+EIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 362 SGAVKEAIDSLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIY 421

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           D+DGSS+IAASEPLAVLVNKGTASASEILAGALKDNKRA+LFGEPTYGKG       KIQ
Sbjct: 422 DTDGSSAIAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG-------KIQ 481

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVF+LSDGSGLAVTVARYETPAH DIDKV +
Sbjct: 482 SVFQLSDGSGLAVTVARYETPAHTDIDKVGV 505

[Close]

BLAST of Carg10124-RA vs. TrEMBL
Match: tr|A0A2I4G2F6|A0A2I4G2F6_9ROSI (carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109004104 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.4e-66
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAID LRSN VNAFVLDLRDNSGGLFPEG+EIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 367 SGAVKEAIDSLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIY 426

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           D+DGSS+IAASEPLAVLVNKGTASASEILAGALKDNKRA+LFGEPTYGKG       KIQ
Sbjct: 427 DTDGSSAIAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG-------KIQ 486

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVF+LSDGSGLAVTVARYETPAH DIDKV +
Sbjct: 487 SVFQLSDGSGLAVTVARYETPAHTDIDKVGV 510

[Close]

BLAST of Carg10124-RA vs. TrEMBL
Match: tr|A0A2P4L1V3|A0A2P4L1V3_QUESU (Isoform 2 of carboxyl-terminal-processing peptidase 2, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_42606 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.7e-66
Identity = 132/151 (87.42%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   AGAVKEAIDYLRSNKVNAFVLDLRDNSGGLFPEGVEIAKIWLDKGVIVYICDSRGVRDIY 66
           +GAVKEAID LRSN VNAFVLDLRDNSGGLFPEG+EIAKIWLDKGVIVYICDSRGVRDIY
Sbjct: 125 SGAVKEAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIY 184

Query: 67  DSDGSSSIAASEPLAVLVNKGTASASEILAGALKDNKRAILFGEPTYGKGIHILLCSKIQ 126
           D+DGS++IAASEPLAVLVNKGTASASEILAGALKDNKRA+LFGEPTYGKG       KIQ
Sbjct: 185 DTDGSNAIAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG-------KIQ 244

Query: 127 SVFKLSDGSGLAVTVARYETPAHIDIDKVSL 158
           SVF+LSDGSGLAVTVARYETPAH DIDKV +
Sbjct: 245 SVFELSDGSGLAVTVARYETPAHTDIDKVGV 268

The following BLAST results are available for this feature:

BLAST of Carg10124-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959504.1	1.7e-69	93.38	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 [Cucurbi...	[more]
XP_022959503.1	1.7e-69	93.38	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbi...	[more]
XP_023006378.1	1.7e-69	93.38	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbi...	[more]
XP_023006380.1	1.7e-69	93.38	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 [Cucurbi...	[more]
XP_023548679.1	1.7e-69	93.38	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 [Cucurbi...	[more]

BLAST of Carg10124-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17740.1	6.8e-65	80.92	Peptidase S41 family protein	[more]
AT3G57680.1	3.0e-28	44.44	Peptidase S41 family protein	[more]
AT5G46390.2	1.8e-25	47.55	Peptidase S41 family protein	[more]

BLAST of Carg10124-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23614\|CTPA2_ARATH	1.2e-63	80.92	Carboxyl-terminal-processing peptidase 2, chloroplastic OS=Arabidopsis thaliana ...	[more]
sp\|O04073\|CTPA_TETOB	6.1e-39	55.33	C-terminal processing peptidase, chloroplastic OS=Tetradesmus obliquus OX=3088 G...	[more]
sp\|Q55669\|CTPA_SYNY3	2.0e-34	49.07	Carboxyl-terminal-processing protease OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
sp\|P42784\|CTPA_SYNP2	3.8e-33	47.83	Carboxyl-terminal-processing protease OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
sp\|F4J3G5\|CTPA3_ARATH	5.4e-27	44.44	Carboxyl-terminal-processing peptidase 3, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Carg10124-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIE8\|A0A0A0LIE8_CUCSA	5.2e-67	90.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G165670 PE=4 SV=1	[more]
tr\|A0A1S3CDJ4\|A0A1S3CDJ4_CUCME	8.8e-67	90.07	carboxyl-terminal-processing peptidase 2, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
tr\|A0A2I4G2E1\|A0A2I4G2E1_9ROSI	4.4e-66	88.08	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X2 OS=Jugla...	[more]
tr\|A0A2I4G2F6\|A0A2I4G2F6_9ROSI	4.4e-66	88.08	carboxyl-terminal-processing peptidase 2, chloroplastic-like isoform X1 OS=Jugla...	[more]
tr\|A0A2P4L1V3\|A0A2P4L1V3_QUESU	9.7e-66	87.42	Isoform 2 of carboxyl-terminal-processing peptidase 2, chloroplastic OS=Quercus ...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008236	serine-type peptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **INTERPRO**
Term	Definition
IPR029045	ClpP/crotonase-like_dom_sf
IPR004447	Peptidase_S41A
IPR005151	Tail-specific_protease

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008236	serine-type peptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg10124	Carg10124	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg10124-RA	Carg10124-RA-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10124-RA.CDS.5	Carg10124-RA.CDS.5	CDS
Carg10124-RA.CDS.4	Carg10124-RA.CDS.4	CDS
Carg10124-RA.CDS.3	Carg10124-RA.CDS.3	CDS
Carg10124-RA.CDS.2	Carg10124-RA.CDS.2	CDS
Carg10124-RA.CDS.1	Carg10124-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg10124-RA.exon.5	Carg10124-RA.exon.5	exon
Carg10124-RA.exon.4	Carg10124-RA.exon.4	exon
Carg10124-RA.exon.3	Carg10124-RA.exon.3	exon
Carg10124-RA.exon.2	Carg10124-RA.exon.2	exon
Carg10124-RA.exon.1	Carg10124-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005151	Tail specific protease	SMART	SM00245	tsp_4	coord: 2..163 e-value: 1.4E-36 score: 137.5
IPR005151	Tail specific protease	PFAM	PF03572	Peptidase_S41	coord: 2..154 e-value: 1.5E-36 score: 125.3
None	No IPR available	GENE3D	G3DSA:3.90.226.10		coord: 2..173 e-value: 1.1E-45 score: 157.0
None	No IPR available	PANTHER	PTHR32060:SF7	CARBOXYL-TERMINAL-PROCESSING PEPTIDASE 2, CHLOROPLASTIC	coord: 7..157
None	No IPR available	PANTHER	PTHR32060	FAMILY NOT NAMED	coord: 7..157
IPR004447	C-terminal-processing peptidase S41A	CDD	cd07560	Peptidase_S41_CPP	coord: 2..155 e-value: 1.34587E-61 score: 192.242
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	SSF52096	ClpP/crotonase	coord: 6..155