Carg10000-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAGAGAGAGAGAGATCGCGCGCACCCCCATCGAGGAGAGGGAAGAGTCTGCGCCATTCAAATTGTGTGTCGCTCTGTCGATGGCATCCAGGGGCATTGAATGGCCCAGGTGGACCAGAATTTATGTAGAAGGAAAAACAAAAAAGGGAAGAAAGAGTTGGAAAGAAAAGAAAGGAAAGGAAAGGAAAGCGAAGATGATGGATTTCGAGATGTCTTCTAATGTCCTCCAACCAAACCCACCTCTCACAAACATCTTCATCACTGTCTCTGAAAACAACAATATTTTGCACCGAGTTATGTGGGCTTTTTTGGGTTTTAGTTGGCTCGGTCAGAGCTTCACAGAGAAAACAGGAAACCAGGAACCTTCACCCACCCCCCACCCCCTTCCTTCTCTTCCTTCCCAATTCCCTCACCAATTCCCATCCATTTCTCTATTCTCTTTCTTCTCTCCCTCTTTCTTTCCCCATCTAACGTTTTGGTTCTTTACCCATCTGGGTTCTTAATTTCCTTTCTTCATTCCCATCTATGAAGAAGATGAGAGTGAAAGGGGCTGCTGCTCTCTCCCAATACCCTGTGTATGAGGATCCCAAGGCCAGATTCAAGCATCACGGTCTCCTCCATGATTATCAGGTCTTGGAGAAGGTAATTTTCTTTTGCAGCTTCTACGGATTTGGGGTTTGTTTTTTTCTCTCGTGATTCTATCAGATCTGGCTTTCTTTTGATGAATGTTTGAATATTTTTTTCAGATCTTCTCATATATTGATTTCATGTGAGATTTGGGTTGTTTCTTTTTTCATACAATTTCTGGTTTGGAAGAGGAAAAGATGGTTTTGATCTATTAGCTCTCAATCATGGAAACTTGTTTTTTTCTTTTCTTTGGGCTAAGATAATTCTTCCGAGTTCTTTTTATGGATTGTTTGTTGAAATTTGAAATACCCATCTTAGATCATCCTTCTCCCCCCCAGTTCTGAGTTTGTGACATAGAGATCGGTTTAAGACTCAGGAATGTTATGGATGAACAAACAGTTGAAAGTTTTTGTTTTCCTTCCAGGAAACAGGAACTATCAAGAGCAAATTGCAGATGATGAAGCAAAAGAAGATGACCTTGATTGCAGAAGTCAGGTATAATCTTTACGTTATTACATTGTATTTGTACTGATCTTCATCAGGAATTGGTGAATTGTTTAGGCCTAACTATGAGTCTACGTTTATATTGAAGATTCTTGAGGAAGAGATATGAGTACTTAATGAACAACCAATTATCAACAAAGGAACATTATTCGAATGGAGATCTAATGCAGCAGAAGCAATTTCATAATAATAAGAAGGGGAAGAATGTTGCAAGAAGAAGACCTGCTTTGCAACCTGTCATGGCTATCTCTCATATAAACCAAAAGGAAAGAATTGACAAAGGATTCAGTGTTCCTCTCCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAATCAACAGAATCCGACGCCCGTTTTCGACTTGAATCAGAAGGAAAGAATGTATAGTGAGAGAGACATCACTCCATTTTTTGATTTGAACCAAATTTCGGTAATTGTCTAAGGGGACTTATTTGGGTACTAATGTTATGATTGCTAAACTCTATCAACCTCCTCTCCCTAACTATTGTTCCTTTGGTTCAGATAGAGGAAGAGGAATTGCAGACTCGTTACGAGCCATTGAGTGCGGTTGAGTTGAAGAAAAGCCTTCTTCGAGGAGGGAACGACGAGCAGCAAAACGATATCAAGATTTTGGCGTGCAGGGGCATTGGAGATGGTCCAAGTCGAGCTGGTAAGAGGAAGATTTCATGGCAAGACCAGGTTGCTTTAAGGGTTTGA GAGAGAGAGAGAGATCGCGCGCACCCCCATCGAGGAGAGGGAAGAGTCTGCGCCATTCAAATTGTGTGTCGCTCTGTCGATGGCATCCAGGGGCATTGAATGGCCCAGGTGGACCAGAATTTATGTAGAAGGAAAAACAAAAAAGGGAAGAAAGAGTTGGAAAGAAAACCTTCCCAATTCCCTCACCAATTCCCATCCATTTCTCTATTCTCTTTCTTCTCTCCCTCTTTCTTTCCCCATCTAACGTTTTGGTTCTTTACCCATCTGGGTTCTTAATTTCCTTTCTTCATTCCCATCTATGAAGAAGATGAGAGTGAAAGGGGCTGCTGCTCTCTCCCAATACCCTGTGTATGAGGATCCCAAGGCCAGATTCAAGCATCACGGTCTCCTCCATGATTATCAGGTCTTGGAGAAGGAAACAGGAACTATCAAGAGCAAATTGCAGATGATGAAGCAAAAGAAGATGACCTTGATTGCAGAAGTCAGATTCTTGAGGAAGAGATATGAGTACTTAATGAACAACCAATTATCAACAAAGGAACATTATTCGAATGGAGATCTAATGCAGCAGAAGCAATTTCATAATAATAAGAAGGGGAAGAATGTTGCAAGAAGAAGACCTGCTTTGCAACCTGTCATGGCTATCTCTCATATAAACCAAAAGGAAAGAATTGACAAAGGATTCAGTGTTCCTCTCCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAATCAACAGAATCCGACGCCCGTTTTCGACTTGAATCAGAAGGAAAGAATGTATAGTGAGAGAGACATCACTCCATTTTTTGATTTGAACCAAATTTCGATAGAGGAAGAGGAATTGCAGACTCGTTACGAGCCATTGAGTGCGGTTGAGTTGAAGAAAAGCCTTCTTCGAGGAGGGAACGACGAGCAGCAAAACGATATCAAGATTTTGGCGTGCAGGGGCATTGGAGATGGTCCAAGTCGAGCTGGTAAGAGGAAGATTTCATGGCAAGACCAGGTTGCTTTAAGGGTTTGA ATGAAGAAGATGAGAGTGAAAGGGGCTGCTGCTCTCTCCCAATACCCTGTGTATGAGGATCCCAAGGCCAGATTCAAGCATCACGGTCTCCTCCATGATTATCAGGTCTTGGAGAAGGAAACAGGAACTATCAAGAGCAAATTGCAGATGATGAAGCAAAAGAAGATGACCTTGATTGCAGAAGTCAGATTCTTGAGGAAGAGATATGAGTACTTAATGAACAACCAATTATCAACAAAGGAACATTATTCGAATGGAGATCTAATGCAGCAGAAGCAATTTCATAATAATAAGAAGGGGAAGAATGTTGCAAGAAGAAGACCTGCTTTGCAACCTGTCATGGCTATCTCTCATATAAACCAAAAGGAAAGAATTGACAAAGGATTCAGTGTTCCTCTCCAGAATTCTACTCCAATTCCTGTTCTTGACTTAAACCAGAAGGCAAAGACTTCTTCTAGGAAGAAAGCCAATCAACAGAATCCGACGCCCGTTTTCGACTTGAATCAGAAGGAAAGAATGTATAGTGAGAGAGACATCACTCCATTTTTTGATTTGAACCAAATTTCGATAGAGGAAGAGGAATTGCAGACTCGTTACGAGCCATTGAGTGCGGTTGAGTTGAAGAAAAGCCTTCTTCGAGGAGGGAACGACGAGCAGCAAAACGATATCAAGATTTTGGCGTGCAGGGGCATTGGAGATGGTCCAAGTCGAGCTGGTAAGAGGAAGATTTCATGGCAAGACCAGGTTGCTTTAAGGGTTTGA MKKMRVKGAAALSQYPVYEDPKARFKHHGLLHDYQVLEKETGTIKSKLQMMKQKKMTLIAEVRFLRKRYEYLMNNQLSTKEHYSNGDLMQQKQFHNNKKGKNVARRRPALQPVMAISHINQKERIDKGFSVPLQNSTPIPVLDLNQKAKTSSRKKANQQNPTPVFDLNQKERMYSERDITPFFDLNQISIEEEELQTRYEPLSAVELKKSLLRGGNDEQQNDIKILACRGIGDGPSRAGKRKISWQDQVALRV
BLAST of Carg10000-RA vs. NCBI nr
Match: XP_022921741.1 (uncharacterized protein LOC111429897 [Cucurbita moschata]) HSP 1 Score: 419.1 bits (1076), Expect = 1.1e-113 Identity = 244/253 (96.44%), Postives = 245/253 (96.84%), Query Frame = 0
BLAST of Carg10000-RA vs. NCBI nr
Match: XP_023516535.1 (uncharacterized protein LOC111780386 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 400.2 bits (1027), Expect = 5.2e-108 Identity = 233/258 (90.31%), Postives = 235/258 (91.09%), Query Frame = 0
BLAST of Carg10000-RA vs. NCBI nr
Match: XP_022988590.1 (uncharacterized protein LOC111485789 [Cucurbita maxima]) HSP 1 Score: 357.8 bits (917), Expect = 3.0e-95 Identity = 212/258 (82.17%), Postives = 221/258 (85.66%), Query Frame = 0
BLAST of Carg10000-RA vs. NCBI nr
Match: XP_008443848.1 (PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo]) HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79 Identity = 199/263 (75.67%), Postives = 209/263 (79.47%), Query Frame = 0
BLAST of Carg10000-RA vs. NCBI nr
Match: KGN65169.1 (hypothetical protein Csa_1G256780 [Cucumis sativus]) HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79 Identity = 198/263 (75.29%), Postives = 211/263 (80.23%), Query Frame = 0
BLAST of Carg10000-RA vs. TAIR10
Match: AT5G57910.1 (unknown protein) HSP 1 Score: 94.4 bits (233), Expect = 1.1e-19 Identity = 80/246 (32.52%), Postives = 112/246 (45.53%), Query Frame = 0
BLAST of Carg10000-RA vs. TAIR10
Match: AT4G30630.1 (unknown protein) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14 Identity = 69/223 (30.94%), Postives = 104/223 (46.64%), Query Frame = 0
BLAST of Carg10000-RA vs. TrEMBL
Match: tr|A0A1S3B8I5|A0A1S3B8I5_CUCME (uncharacterized protein LOC103487344 OS=Cucumis melo OX=3656 GN=LOC103487344 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 8.8e-80 Identity = 199/263 (75.67%), Postives = 209/263 (79.47%), Query Frame = 0
BLAST of Carg10000-RA vs. TrEMBL
Match: tr|A0A0A0LW13|A0A0A0LW13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256780 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 8.8e-80 Identity = 198/263 (75.29%), Postives = 211/263 (80.23%), Query Frame = 0
BLAST of Carg10000-RA vs. TrEMBL
Match: tr|I1JGQ6|I1JGQ6_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100786273 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38 Identity = 115/264 (43.56%), Postives = 144/264 (54.55%), Query Frame = 0
BLAST of Carg10000-RA vs. TrEMBL
Match: tr|A0A0B2SET9|A0A0B2SET9_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_037006 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 4.9e-38 Identity = 115/264 (43.56%), Postives = 144/264 (54.55%), Query Frame = 0
BLAST of Carg10000-RA vs. TrEMBL
Match: tr|A0A1J7H4F7|A0A1J7H4F7_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_27207 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.9e-37 Identity = 106/262 (40.46%), Postives = 145/262 (55.34%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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