Carg09998-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09998-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	APO protein 2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_030 : 902542 .. 905763 (-)
Sequence length	1658

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTCGTTCTCATTCTTCTGTTTACTGTCACTGGATAACTATCCTTAACTGAAATCGAAGCTTCCTCATTCTATTTCACAACAATTCCCAGCAAATACATCGATTTTCCTGTAAGTTCGTAGTTTTCTTCTTCTTCTTCCGTTGTCTTTCCATTCCCATTTCCTCTTACCCTTTTTTCCATTGCTTGTTCTTGCTGGAGTTTGAATTCTTTGTACTGGGTTTCAGTATGCGCTTCTTTTTTAGAGGTTTACTACGAATTTACTTTATAATGATTTCCAGCTGAAGCGGACGACTGGGGTATTATGAACTTTTTATTTCCTGCCCTTGCCCACCATGTGTTTGATAATATTACCTTTTGTGGGTTTTTAATTATAACTATAGGTTCTTCGATTAGTTGCATATAATTTGCATAATTCAATATGTTTTGTTGCTTCGAGGATCTTATTGATGTTGGTTTAGGGTATGCTTTAAGATTTGTGCTACTTTGGGACTTCCTTTGTGTTTGAATGATTAATAGCTTAATCCAATCTGGAATAGCTCTTGAATTTGCTCAATAAGATCCTCCAGAAGGCCCATTAATCCTGCATTGCGTGCCTTTTAGTTGCATCGTCTTTCAGCTTCCCCTATTCTACCATTCAATTCTTCTTTTTAATCATTTTACATGTTTGTACATCTCATAGTTTGTAAGCAAGTTTTTCTGGTTTCAGGATGGATTGTAGTTCTTGTAACTACTCTTTTAGTACTATTTCATCTTGTTCTGTTAAATGGATTGAATTTCCTTCAAAATTGGAGTCCCGGAGAATTTTCTTTCAGAAGAAGTCTGAATTTGTGAAGCCCTGTGTAGGCCCAGGTCTTAGTTTGCTGGATTCTTTGCAGGTATGAATAATATCTTATGTTTTCAATCTTTGCTCTAAGCTTCTGTGCCTTACCTTATTTTGAATTTTCTATTTTCTATTGTGATTTTCAGCATATTAGTAACTTTGACTTCAAAGCCGGATCCAAATCTATGATTTCATCCTGGAAAATTCCTTGTTCATATTCATTTGCTGTAAGATGTGATCATCCCCAAAATGCTGATTTTCCTCGGTACTATTCCAAGAAGGAGAAGAAGCCATTTCCAGTTCCCATTGTGGAGTTGAGAAGAGCTGCCAGGGAGAGGATGAAAAAGAGTCAAGGCCAGCCGAGAAAACCAGTACCACCTCCAAAGAATGGGTTGACAGTTAAGAGCATGATACCAATAGCCTACAATGTATTCAATGCAAGAATTACTTTGATCAACAATCTCAAGAAGCTCTTGAAGGTGGTACCTGTTCATGCTTGCGGGTAATTCTCGTTTTTAGTCTCAAATTGCTTGTCCTTCAAAGTAAATACATGCCACATTTGATGTTTGTGTTGAGGATTGTTGGGAGGGAGTCCCACAGTGGCTAATTAAGGAGATGATCATGGGTTTATAAGTAAGGGATACATCTCCATTGGTATGAGGCATTTTAGGGAAACCAAAAGTAAAGCCATGAGAGCTTATGCTCGAAGTGGACAATATCATACCATTGTGGAGAGTCGTGACTCCTAATAGTTTGACCCTTTGAAAGAATCTTCTTACCCTTTTAACTCGGAATATCAAACATGATCATGTTATTTCCAGTTCATCACTGTAAGATAAGATAGTTGTGTCATTACGTTGCAAGTAACTTCATTCATTTTTTGATAGTTAATCTTACTTTATGCAGTTATTTGTGATCCAAATAGCTTAAACAGAATTGATGGTTATTGCTGTTGGTCTGATTGGAGATTATATTTTGCATTAAGCAGCTTGAAGACTGCTGGACTTCATATTTCGCTTACTTTCTAATGTGCCTCCTTTTATCAATATGATTTAACGTGTGCATAACAATTTAGCATAAAAATGAGTGATAAATTCTCGTATGATTGGTTGAAATAGACAATACTATTGAACGAACCACTGATATGAGGCACCATTAATCCTGTACACAAACATCTTTATCTCAGAAGTCAGACATCACTGCACTTAAGAAATCGTATGAATCTCATACTGAAAAAATAGCTTCCACTCCCATGTTCGGACTGATTTGATCATCATTGTAATCTAAGAGTCATGCTTGTTTGATGTGAGATATCCAACAACTTTCTTCCTCAAACAGAACTTCACAACCTTGTCTAAATGTGATGAAAGTTATGCAGATTTTGCAATGAAATCCATGTGGGACCTGTCGGACATCCATTCAAGTCATGCAGAGGGCCAAATGCCAATTTCCGGAAGGGGCTTCATGAATGGACAAAGGCAATTCTTGAAGACATATTCCTGCCAGTAGAAGCATACCACCTCTACGATCGTCTTGGGAAACGTATCTCTCATCAGGAACGATACTCAATTCCTCGAATTCCTGCCGTGGTTGAGCTTTGCATTCAAGCGGGTGTCGATCTTCCTGAATATCCTGCAAAGAGGAGAAGGAAACCAATCATCCGCATCTCAAAAAGTGAATTCATTGACGCAGATGAAAGTGAACTACCAGATCCTGAACCAGAAGAACCTCTGAAACCTCTGCTCACAGAAATACCAGATTCTGATGTTGTTGCCCCAAGTGACAAAGAAGACATAGCTTGGCTTGCCGACCAAACGCTTCAAGCATGGGAGCAGATGAGGCAAGGAGCCAAAAGACTGATGAAGATGTATCCAGTGAGAGTATGTGGGTATTGTCCAGAGGTACATATTGGTGGCAGTGGGCACAAAGCACAGAACTGTGGAGCTTTCAAGCACCAACAACGAAACGGGCAACATGGTTGGCAAAGGGCCGTGCTCGACGACCTGATACCACCGAGATACGTTTGGCACGTCCCAGACGTAAATGGCCCTCCATTGCAGAGGGAGCTTAGGAACTTTTACGGACAGGCGCCTGCTGTAGTTGAAATATGCATCCAAGCCGGCGCTGCTATCCCAGACAAGTACAAATCAACGATGCGAATGGACGTGGGGATTCCATTGGACATTAAAGAAGCTGAAATGGTAGTTTGAGGTGTTTCCTTCTTGCTCTATAGTTAACCCCTTAAACATTGTTGTATACCTTCAAAATGAATATATGCTAGGTTTTGGCTTTAGATGGTACTTCCTTCCATTTATAATAATATCAACTTACAGAAACAAGAAAAAGGGTTTGAAGAAAAATGATTTGCACATAAACTGATTTCTTAGATTTATTTAAGG

mRNA sequence

GGAATTCGTTCTCATTCTTCTGTTTACTGTCACTGGATAACTATCCTTAACTGAAATCGAAGCTTCCTCATTCTATTTCACAACAATTCCCAGCAAATACATCGATTTTCCTGATGGATTGTAGTTCTTGTAACTACTCTTTTAGTACTATTTCATCTTGTTCTGTTAAATGGATTGAATTTCCTTCAAAATTGGAGTCCCGGAGAATTTTCTTTCAGAAGAAGTCTGAATTTGTGAAGCCCTGTGTAGGCCCAGGTCTTAGTTTGCTGGATTCTTTGCAGCATATTAGTAACTTTGACTTCAAAGCCGGATCCAAATCTATGATTTCATCCTGGAAAATTCCTTGTTCATATTCATTTGCTGTAAGATGTGATCATCCCCAAAATGCTGATTTTCCTCGGTACTATTCCAAGAAGGAGAAGAAGCCATTTCCAGTTCCCATTGTGGAGTTGAGAAGAGCTGCCAGGGAGAGGATGAAAAAGAGTCAAGGCCAGCCGAGAAAACCAGTACCACCTCCAAAGAATGGGTTGACAGTTAAGAGCATGATACCAATAGCCTACAATGTATTCAATGCAAGAATTACTTTGATCAACAATCTCAAGAAGCTCTTGAAGGTGGTACCTGTTCATGCTTGCGGATTTTGCAATGAAATCCATGTGGGACCTGTCGGACATCCATTCAAGTCATGCAGAGGGCCAAATGCCAATTTCCGGAAGGGGCTTCATGAATGGACAAAGGCAATTCTTGAAGACATATTCCTGCCAGTAGAAGCATACCACCTCTACGATCGTCTTGGGAAACGTATCTCTCATCAGGAACGATACTCAATTCCTCGAATTCCTGCCGTGGTTGAGCTTTGCATTCAAGCGGGTGTCGATCTTCCTGAATATCCTGCAAAGAGGAGAAGGAAACCAATCATCCGCATCTCAAAAAGTGAATTCATTGACGCAGATGAAAGTGAACTACCAGATCCTGAACCAGAAGAACCTCTGAAACCTCTGCTCACAGAAATACCAGATTCTGATGTTGTTGCCCCAAGTGACAAAGAAGACATAGCTTGGCTTGCCGACCAAACGCTTCAAGCATGGGAGCAGATGAGGCAAGGAGCCAAAAGACTGATGAAGATGTATCCAGTGAGAGTATGTGGGTATTGTCCAGAGGTACATATTGGTGGCAGTGGGCACAAAGCACAGAACTGTGGAGCTTTCAAGCACCAACAACGAAACGGGCAACATGGTTGGCAAAGGGCCGTGCTCGACGACCTGATACCACCGAGATACGTTTGGCACGTCCCAGACGTAAATGGCCCTCCATTGCAGAGGGAGCTTAGGAACTTTTACGGACAGGCGCCTGCTGTAGTTGAAATATGCATCCAAGCCGGCGCTGCTATCCCAGACAAGTACAAATCAACGATGCGAATGGACGTGGGGATTCCATTGGACATTAAAGAAGCTGAAATGGTAGTTTGAGGTGTTTCCTTCTTGCTCTATAGTTAACCCCTTAAACATTGTTGTATACCTTCAAAATGAATATATGCTAGGTTTTGGCTTTAGATGGTACTTCCTTCCATTTATAATAATATCAACTTACAGAAACAAGAAAAAGGGTTTGAAGAAAAATGATTTGCACATAAACTGATTTCTTAGATTTATTTAAGG

Coding sequence (CDS)

ATGGATTGTAGTTCTTGTAACTACTCTTTTAGTACTATTTCATCTTGTTCTGTTAAATGGATTGAATTTCCTTCAAAATTGGAGTCCCGGAGAATTTTCTTTCAGAAGAAGTCTGAATTTGTGAAGCCCTGTGTAGGCCCAGGTCTTAGTTTGCTGGATTCTTTGCAGCATATTAGTAACTTTGACTTCAAAGCCGGATCCAAATCTATGATTTCATCCTGGAAAATTCCTTGTTCATATTCATTTGCTGTAAGATGTGATCATCCCCAAAATGCTGATTTTCCTCGGTACTATTCCAAGAAGGAGAAGAAGCCATTTCCAGTTCCCATTGTGGAGTTGAGAAGAGCTGCCAGGGAGAGGATGAAAAAGAGTCAAGGCCAGCCGAGAAAACCAGTACCACCTCCAAAGAATGGGTTGACAGTTAAGAGCATGATACCAATAGCCTACAATGTATTCAATGCAAGAATTACTTTGATCAACAATCTCAAGAAGCTCTTGAAGGTGGTACCTGTTCATGCTTGCGGATTTTGCAATGAAATCCATGTGGGACCTGTCGGACATCCATTCAAGTCATGCAGAGGGCCAAATGCCAATTTCCGGAAGGGGCTTCATGAATGGACAAAGGCAATTCTTGAAGACATATTCCTGCCAGTAGAAGCATACCACCTCTACGATCGTCTTGGGAAACGTATCTCTCATCAGGAACGATACTCAATTCCTCGAATTCCTGCCGTGGTTGAGCTTTGCATTCAAGCGGGTGTCGATCTTCCTGAATATCCTGCAAAGAGGAGAAGGAAACCAATCATCCGCATCTCAAAAAGTGAATTCATTGACGCAGATGAAAGTGAACTACCAGATCCTGAACCAGAAGAACCTCTGAAACCTCTGCTCACAGAAATACCAGATTCTGATGTTGTTGCCCCAAGTGACAAAGAAGACATAGCTTGGCTTGCCGACCAAACGCTTCAAGCATGGGAGCAGATGAGGCAAGGAGCCAAAAGACTGATGAAGATGTATCCAGTGAGAGTATGTGGGTATTGTCCAGAGGTACATATTGGTGGCAGTGGGCACAAAGCACAGAACTGTGGAGCTTTCAAGCACCAACAACGAAACGGGCAACATGGTTGGCAAAGGGCCGTGCTCGACGACCTGATACCACCGAGATACGTTTGGCACGTCCCAGACGTAAATGGCCCTCCATTGCAGAGGGAGCTTAGGAACTTTTACGGACAGGCGCCTGCTGTAGTTGAAATATGCATCCAAGCCGGCGCTGCTATCCCAGACAAGTACAAATCAACGATGCGAATGGACGTGGGGATTCCATTGGACATTAAAGAAGCTGAAATGGTAGTTTGA

Protein sequence

MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISNFDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV

Homology

[Close]

BLAST of Carg09998-RA vs. NCBI nr
Match: XP_023516533.1 (APO protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 933.3 bits (2411), Expect = 3.0e-268
Identity = 449/451 (99.56%), Postives = 449/451 (99.56%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKAGSKSMISSWKIPCSYS AVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKAGSKSMISSWKIPCSYSCAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI
Sbjct: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ
Sbjct: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPDKYKSTMRMDVGIP DIKEAEMVV
Sbjct: 421 QAGAAIPDKYKSTMRMDVGIPSDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. NCBI nr
Match: XP_022921740.1 (APO protein 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 932.6 bits (2409), Expect = 5.2e-268
Identity = 448/451 (99.33%), Postives = 449/451 (99.56%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCSSCNYSFSTISSCSVKWIEFPSKLESRRI FQKKSEFVKPCVGPGLSLL SLQHISN
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRISFQKKSEFVKPCVGPGLSLLGSLQHISN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI
Sbjct: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ
Sbjct: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWH+PDVNGPPLQRELRNFYGQAPAVVEICI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHIPDVNGPPLQRELRNFYGQAPAVVEICI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. NCBI nr
Match: XP_022988576.1 (APO protein 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 918.7 bits (2373), Expect = 7.7e-264
Identity = 445/452 (98.45%), Postives = 447/452 (98.89%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKP-CVGPGLSLLDSLQHIS 60
           MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEF+KP  VGPGLSLLDSLQHIS
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFLKPSVVGPGLSLLDSLQHIS 60

Query: 61  NFDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE 120
           NFD KAGSKSMISSWKIPCSYS AVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE
Sbjct: 61  NFDSKAGSKSMISSWKIPCSYSCAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE 120

Query: 121 RMKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNE 180
           RMKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNE
Sbjct: 121 RMKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNE 180

Query: 181 IHVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSI 240
           IHVGPVGHPFKSCRGPNANFRKGLHEWT AILEDIFLPVEAYHLYDRLGKRISHQERYSI
Sbjct: 181 IHVGPVGHPFKSCRGPNANFRKGLHEWTTAILEDIFLPVEAYHLYDRLGKRISHQERYSI 240

Query: 241 PRIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTE 300
           PRIPAVVELCIQAGV+LPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTE
Sbjct: 241 PRIPAVVELCIQAGVNLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTE 300

Query: 301 IPDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKA 360
           IPDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKA
Sbjct: 301 IPDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKA 360

Query: 361 QNCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEIC 420
           QNCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEIC
Sbjct: 361 QNCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEIC 420

Query: 421 IQAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           IQAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 IQAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452

[Close]

BLAST of Carg09998-RA vs. NCBI nr
Match: XP_008443853.1 (PREDICTED: APO protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 859.4 bits (2219), Expect = 5.6e-246
Identity = 408/451 (90.47%), Postives = 429/451 (95.12%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCSSCNYS STISSCSVKW+ FPSK ESRRI FQ KSEF+KP    GLSLLDSLQH+SN
Sbjct: 1   MDCSSCNYSLSTISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCLGLSLLDSLQHLSN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           F+FKA +KS ISSWKIPCSYS  ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FNFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MK S+GQPR+PVPPPKNGL VKSMIPIAYNVFNARITL+NNLKKLLKVVPVHACGFCNEI
Sbjct: 121 MKNSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLLNNLKKLLKVVPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRG +ANFRKGLHEWTKA LEDIFLPVEAYHLYDRLG+RISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGQDANFRKGLHEWTKATLEDIFLPVEAYHLYDRLGRRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLP+YPAKRRRKPI+RISKSE+IDADESELPDPEPE PLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPDYPAKRRRKPIVRISKSEYIDADESELPDPEPEVPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
            DSD VAPSD EDIAWLADQTLQAWEQMR+GAKRLMKMYPVRVCGYCPEVH+G SGHKAQ
Sbjct: 301 LDSDAVAPSDVEDIAWLADQTLQAWEQMRRGAKRLMKMYPVRVCGYCPEVHVGSSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPD+NGPPLQRELRNFYGQAPA+VE+CI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDINGPPLQRELRNFYGQAPAIVEMCI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPD+YKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 QAGAAIPDQYKSTMRMDVGIPLDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. NCBI nr
Match: XP_004146678.1 (PREDICTED: APO protein 2, chloroplastic isoform X1 [Cucumis sativus] >KGN65165.1 hypothetical protein Csa_1G256740 [Cucumis sativus])

HSP 1 Score: 854.7 bits (2207), Expect = 1.4e-244
Identity = 405/451 (89.80%), Postives = 426/451 (94.46%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCS+CNYS S ISSCSVKW+ FPSK ESRRI FQ KSEF+KP   PGLSLLDSLQH+SN
Sbjct: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKA +KS ISSWKIPCSYS  ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MK S+GQPR  VPPPKNGL VKSMIPIAY VFNARITLINNLKKLLKV+PVHACGFCNEI
Sbjct: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRG NA+ RKGLHEWTKA LEDIFLPVEAYHLYDRLG+RISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGKNASLRKGLHEWTKATLEDIFLPVEAYHLYDRLGRRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLP+YPAKRRRKP+IRISKSE+IDADESELPDPEPE PLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPDYPAKRRRKPVIRISKSEYIDADESELPDPEPEVPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PDSD VAPSD EDIAWLADQT+QAWEQMR+GAKRL+KMYPVRVCGYCPEVH+G SGHKAQ
Sbjct: 301 PDSDAVAPSDVEDIAWLADQTIQAWEQMRRGAKRLIKMYPVRVCGYCPEVHVGSSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPA+VE+CI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAIVEMCI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPD+YKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 QAGAAIPDEYKSTMRMDVGIPLDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. TAIR10
Match: AT5G57930.2 (Arabidopsis thaliana protein of unknown function (DUF794))

HSP 1 Score: 579.7 bits (1493), Expect = 1.5e-165
Identity = 276/443 (62.30%), Postives = 341/443 (76.98%), Query Frame = 0


Query: 9   SFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISNFDFKAGSK 68
           S ST+S  S K + F     +RR       +F+ P          SLQ  S+ +F     
Sbjct: 9   SSSTVSGFSPKSVPFAIHSVTRR-------QFLNPNTFYRFGFSPSLQG-SSIEFSLQLN 68

Query: 69  SMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKSQGQP 128
           S +   K   S    VR D PQN D P+ Y+++EKKPFPVPIV+LRRAARER+K ++ +P
Sbjct: 69  SRVVLSKERRSLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNNKDKP 128

Query: 129 RKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHP 188
           ++P+PPPKNG+ VKS++P+AY V+NARI LINNL +L+KVV V+ACG+CNEIHVGP GHP
Sbjct: 129 KRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHP 188

Query: 189 FKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVEL 248
           FKSC+GPN + RKGLHEWT +++ED+ +P+EAYHL+DRLGKRI H ER+SIPR+PAVVEL
Sbjct: 189 FKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVEL 248

Query: 249 CIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAP 308
           CIQ GV++PE+PAKRRRKPIIRI KSEF+DA                 LTE+P S++  P
Sbjct: 249 CIQGGVEIPEFPAKRRRKPIIRIGKSEFVDAXXXXXXXXXXXXXXXXXLTELPVSEITPP 308

Query: 309 SDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQ 368
           S +E+   LA++TLQAWE+MR GAK+LM+MY VRVCGYCPEVH+G +GHKAQNCGAFKHQ
Sbjct: 309 SSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQ 368

Query: 369 QRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPD 428
           QRNGQHGWQ AVLDDLIPPRYVWHVPDVNGPP+QRELR+FYGQAPAVVEIC QAGA +P+
Sbjct: 369 QRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPE 428

Query: 429 KYKSTMRMDVGIPLDIKEAEMVV 452
            Y++TMR++VGIP  +KEAEMVV
Sbjct: 429 HYRATMRLEVGIPSSVKEAEMVV 443

[Close]

BLAST of Carg09998-RA vs. TAIR10
Match: AT1G64810.2 (Arabidopsis thaliana protein of unknown function (DUF794))

HSP 1 Score: 349.4 bits (895), Expect = 3.4e-96
Identity = 170/375 (45.33%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 81  SFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKSQGQPRKPVPPPKNGLT 140
           SF  R    QN D P    K +KKP+P+P  +++  AR+  K +Q    K + PPKNGL 
Sbjct: 87  SFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLL 146

Query: 141 VKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFR 200
           V +++P+A  V +    LI  L +LL VVPV AC  C  +HV  VGH  + C GP  + R
Sbjct: 147 VPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQR 206

Query: 201 KGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAGVDLPEYP 260
           +G H W K  + D+ +PVE+YH+YD  G+RI H+ R+   RIPA+VELCIQAGV++PEYP
Sbjct: 207 RGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYP 266

Query: 261 AKRRRKPIIRISKSEFIDAD--ESELPDPEPEEPLKPLLTEIPDSDV---VAPSDKEDIA 320
            +RR +P IR+     ID      E   P+    L   L E+    V     P   EDI 
Sbjct: 267 CRRRTQP-IRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIP 326

Query: 321 WLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHG 380
            +A +T+ A+E++R G  +LM+ + V+ CGYC EVH+G  GH  + CG FKHQ R+G+HG
Sbjct: 327 KIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHG 386

Query: 381 WQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMR 440
           WQ A++D++ PP YVWHV D+ G PL   LR FYG+APA+VEIC+ +GA +P +YK+ MR
Sbjct: 387 WQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMR 446

Query: 441 MDVGIPLDIKEAEMV 451
           +D+ +P D +EA+MV
Sbjct: 447 LDIIVP-DSQEADMV 459

[Close]

BLAST of Carg09998-RA vs. TAIR10
Match: AT5G61930.1 (Arabidopsis thaliana protein of unknown function (DUF794))

HSP 1 Score: 300.8 bits (769), Expect = 1.4e-81
Identity = 151/359 (42.06%), Postives = 219/359 (61.00%), Query Frame = 0


Query: 87  DHPQNADFPR-YYSKKEKKPFPVPIVELRRAARERMKKSQGQP-RKPVPPPKNGLTVKSM 146
           + P  AD P+    K E+KP+P P+ EL R A+E  +  + QP R    PP NGL V  +
Sbjct: 39  EDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPEL 98

Query: 147 IPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFRKGLH 206
           + +A+ V   R  L++ L K++  VPVH C  C E+H+G  GH  ++C GP +  R   H
Sbjct: 99  VDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATH 158

Query: 207 EWTKAILEDIFLPVEAYHLYDRLGK-RISHQERYSIPRIPAVVELCIQAGVDLPEYPAKR 266
            W +  + D+ L  + +HLYDR  K R+ H ER+++P+I AV+ELCIQAGVDL ++P+KR
Sbjct: 159 VWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKR 218

Query: 267 RRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKEDIAWLADQTLQ 326
           R KP+  I   E    D  ++ D   E  +    T I + D     +K+ +  L+ +T++
Sbjct: 219 RSKPVYSI---EGRIVDFEDVNDGNSELAVTSTTTLIQEDD-RCKEEKKSLKELSFETME 278

Query: 327 AWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHGWQRAVLDD 386
           +W +M  G ++LM+ Y V  CGYCPE+ +G  GHK + C A KHQ R+G H WQ A +DD
Sbjct: 279 SWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDD 338

Query: 387 LIPPRYVWHVPD-VNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMRMDVGIP 442
           ++ P YVWHV D  +G  L   L+ FYG+APAV+E+C+Q GA +PD+Y S MR+DV  P
Sbjct: 339 VVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393

[Close]

BLAST of Carg09998-RA vs. TAIR10
Match: AT3G21740.1 (Arabidopsis thaliana protein of unknown function (DUF794))

HSP 1 Score: 216.1 bits (549), Expect = 4.5e-56
Identity = 111/295 (37.63%), Postives = 159/295 (53.90%), Query Frame = 0


Query: 141 VKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFR 200
           VK ++P+A  +  AR  LI+N+  LLKV PV  C FC+E+ VG  GH  ++CR       
Sbjct: 55  VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 201 KGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAGVDLPEYP 260
             LHEW    + DI +PVE+YHL++     I HQER+   R+PA++ELC QAG   PE  
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 174

Query: 261 AKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKEDIAWLADQ 320
                         E +   E        EE ++ L                D+ ++   
Sbjct: 175 --------------EILQYSEIHDNPQISEEDIRSL-------------PAGDLKYVGAN 234

Query: 321 TLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHGWQRAV 380
            L AWE++R G K+L+ +YP +VC  C EVH+G SGHKA+ CG FK++   G H W++A 
Sbjct: 235 ALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAG 294

Query: 381 LDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMR 436
           ++DL+P + VWH    +   L  E R++YG APA+V +C   GA +P KY   M+
Sbjct: 295 VNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

[Close]

BLAST of Carg09998-RA vs. Swiss-Prot
Match: sp|Q8W4A5|APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 1.1e-163
Identity = 276/447 (61.74%), Postives = 341/447 (76.29%), Query Frame = 0


Query: 5   SCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISNFDFK 64
           S  YS  + S  S K + F     +RR       +F+ P          SLQ  S+ +F 
Sbjct: 2   SITYSAISFSGFSPKSVPFAIHSVTRR-------QFLNPNTFYRFGFSPSLQG-SSIEFS 61

Query: 65  AGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKS 124
               S +   K   S    VR D PQN D P+ Y+++EKKPFPVPIV+LRRAARER+K +
Sbjct: 62  LQLNSRVVLSKERRSLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNN 121

Query: 125 QGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGP 184
           + +P++P+PPPKNG+ VKS++P+AY V+NARI LINNL +L+KVV V+ACG+CNEIHVGP
Sbjct: 122 KDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGP 181

Query: 185 VGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPA 244
            GHPFKSC+GPN + RKGLHEWT +++ED+ +P+EAYHL+DRLGKRI H ER+SIPR+PA
Sbjct: 182 YGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPA 241

Query: 245 VVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSD 304
           VVELCIQ GV++PE+PAKRRRKPIIRI KSEF+DA                 LTE+P S+
Sbjct: 242 VVELCIQGGVEIPEFPAKRRRKPIIRIGKSEFVDAXXXXXXXXXXXXXXXXXLTELPVSE 301

Query: 305 VVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGA 364
           +  PS +E+   LA++TLQAWE+MR GAK+LM+MY VRVCGYCPEVH+G +GHKAQNCGA
Sbjct: 302 ITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGA 361

Query: 365 FKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGA 424
           FKHQQRNGQHGWQ AVLDDLIPPRYVWHVPDVNGPP+QRELR+FYGQAPAVVEIC QAGA
Sbjct: 362 FKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGA 421

Query: 425 AIPDKYKSTMRMDVGIPLDIKEAEMVV 452
            +P+ Y++TMR++VGIP  +KEAEMVV
Sbjct: 422 VVPEHYRATMRLEVGIPSSVKEAEMVV 440

[Close]

BLAST of Carg09998-RA vs. Swiss-Prot
Match: sp|Q9XIR4|APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 6.1e-95
Identity = 170/375 (45.33%), Postives = 236/375 (62.93%), Query Frame = 0


Query: 81  SFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKSQGQPRKPVPPPKNGLT 140
           SF  R    QN D P    K +KKP+P+P  +++  AR+  K +Q    K + PPKNGL 
Sbjct: 63  SFKKRYVSTQNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLL 122

Query: 141 VKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFR 200
           V +++P+A  V +    LI  L +LL VVPV AC  C  +HV  VGH  + C GP  + R
Sbjct: 123 VPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQR 182

Query: 201 KGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAGVDLPEYP 260
           +G H W K  + D+ +PVE+YH+YD  G+RI H+ R+   RIPA+VELCIQAGV++PEYP
Sbjct: 183 RGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPEYP 242

Query: 261 AKRRRKPIIRISKSEFIDAD--ESELPDPEPEEPLKPLLTEIPDSDV---VAPSDKEDIA 320
            +RR +P IR+     ID      E   P+    L   L E+    V     P   EDI 
Sbjct: 243 CRRRTQP-IRMMGKRVIDRGGYHKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPEDIP 302

Query: 321 WLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHG 380
            +A +T+ A+E++R G  +LM+ + V+ CGYC EVH+G  GH  + CG FKHQ R+G+HG
Sbjct: 303 KIAQETMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHG 362

Query: 381 WQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMR 440
           WQ A++D++ PP YVWHV D+ G PL   LR FYG+APA+VEIC+ +GA +P +YK+ MR
Sbjct: 363 WQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMR 422

Query: 441 MDVGIPLDIKEAEMV 451
           +D+ +P D +EA+MV
Sbjct: 423 LDIIVP-DSQEADMV 435

[Close]

BLAST of Carg09998-RA vs. Swiss-Prot
Match: sp|Q9FH50|APO3_ARATH (APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 2.5e-80
Identity = 151/359 (42.06%), Postives = 219/359 (61.00%), Query Frame = 0


Query: 87  DHPQNADFPR-YYSKKEKKPFPVPIVELRRAARERMKKSQGQP-RKPVPPPKNGLTVKSM 146
           + P  AD P+    K E+KP+P P+ EL R A+E  +  + QP R    PP NGL V  +
Sbjct: 39  EDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPEL 98

Query: 147 IPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFRKGLH 206
           + +A+ V   R  L++ L K++  VPVH C  C E+H+G  GH  ++C GP +  R   H
Sbjct: 99  VDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATH 158

Query: 207 EWTKAILEDIFLPVEAYHLYDRLGK-RISHQERYSIPRIPAVVELCIQAGVDLPEYPAKR 266
            W +  + D+ L  + +HLYDR  K R+ H ER+++P+I AV+ELCIQAGVDL ++P+KR
Sbjct: 159 VWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKR 218

Query: 267 RRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKEDIAWLADQTLQ 326
           R KP+  I   E    D  ++ D   E  +    T I + D     +K+ +  L+ +T++
Sbjct: 219 RSKPVYSI---EGRIVDFEDVNDGNSELAVTSTTTLIQEDD-RCKEEKKSLKELSFETME 278

Query: 327 AWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHGWQRAVLDD 386
           +W +M  G ++LM+ Y V  CGYCPE+ +G  GHK + C A KHQ R+G H WQ A +DD
Sbjct: 279 SWFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDD 338

Query: 387 LIPPRYVWHVPD-VNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMRMDVGIP 442
           ++ P YVWHV D  +G  L   L+ FYG+APAV+E+C+Q GA +PD+Y S MR+DV  P
Sbjct: 339 VVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393

[Close]

BLAST of Carg09998-RA vs. Swiss-Prot
Match: sp|Q9LSZ0|APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 8.1e-55
Identity = 111/295 (37.63%), Postives = 159/295 (53.90%), Query Frame = 0


Query: 141 VKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCRGPNANFR 200
           VK ++P+A  +  AR  LI+N+  LLKV PV  C FC+E+ VG  GH  ++CR       
Sbjct: 55  VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 201 KGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAGVDLPEYP 260
             LHEW    + DI +PVE+YHL++     I HQER+   R+PA++ELC QAG   PE  
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPE-- 174

Query: 261 AKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKEDIAWLADQ 320
                         E +   E        EE ++ L                D+ ++   
Sbjct: 175 --------------EILQYSEIHDNPQISEEDIRSL-------------PAGDLKYVGAN 234

Query: 321 TLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQHGWQRAV 380
            L AWE++R G K+L+ +YP +VC  C EVH+G SGHKA+ CG FK++   G H W++A 
Sbjct: 235 ALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAG 294

Query: 381 LDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKSTMR 436
           ++DL+P + VWH    +   L  E R++YG APA+V +C   GA +P KY   M+
Sbjct: 295 VNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320

[Close]

BLAST of Carg09998-RA vs. TrEMBL
Match: tr|A0A1S3B8J0|A0A1S3B8J0_CUCME (APO protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487348 PE=4 SV=1)

HSP 1 Score: 859.4 bits (2219), Expect = 3.7e-246
Identity = 408/451 (90.47%), Postives = 429/451 (95.12%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCSSCNYS STISSCSVKW+ FPSK ESRRI FQ KSEF+KP    GLSLLDSLQH+SN
Sbjct: 1   MDCSSCNYSLSTISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCLGLSLLDSLQHLSN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           F+FKA +KS ISSWKIPCSYS  ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FNFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MK S+GQPR+PVPPPKNGL VKSMIPIAYNVFNARITL+NNLKKLLKVVPVHACGFCNEI
Sbjct: 121 MKNSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLLNNLKKLLKVVPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRG +ANFRKGLHEWTKA LEDIFLPVEAYHLYDRLG+RISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGQDANFRKGLHEWTKATLEDIFLPVEAYHLYDRLGRRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLP+YPAKRRRKPI+RISKSE+IDADESELPDPEPE PLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPDYPAKRRRKPIVRISKSEYIDADESELPDPEPEVPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
            DSD VAPSD EDIAWLADQTLQAWEQMR+GAKRLMKMYPVRVCGYCPEVH+G SGHKAQ
Sbjct: 301 LDSDAVAPSDVEDIAWLADQTLQAWEQMRRGAKRLMKMYPVRVCGYCPEVHVGSSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPD+NGPPLQRELRNFYGQAPA+VE+CI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDINGPPLQRELRNFYGQAPAIVEMCI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPD+YKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 QAGAAIPDQYKSTMRMDVGIPLDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. TrEMBL
Match: tr|A0A0A0LTB5|A0A0A0LTB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256740 PE=4 SV=1)

HSP 1 Score: 854.7 bits (2207), Expect = 9.1e-245
Identity = 405/451 (89.80%), Postives = 426/451 (94.46%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           MDCS+CNYS S ISSCSVKW+ FPSK ESRRI FQ KSEF+KP   PGLSLLDSLQH+SN
Sbjct: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKA +KS ISSWKIPCSYS  ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           MK S+GQPR  VPPPKNGL VKSMIPIAY VFNARITLINNLKKLLKV+PVHACGFCNEI
Sbjct: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGFCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRG NA+ RKGLHEWTKA LEDIFLPVEAYHLYDRLG+RISHQERYSIP
Sbjct: 181 HVGPVGHPFKSCRGKNASLRKGLHEWTKATLEDIFLPVEAYHLYDRLGRRISHQERYSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGVDLP+YPAKRRRKP+IRISKSE+IDADESELPDPEPE PLKPLLTEI
Sbjct: 241 RIPAVVELCIQAGVDLPDYPAKRRRKPVIRISKSEYIDADESELPDPEPEVPLKPLLTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PDSD VAPSD EDIAWLADQT+QAWEQMR+GAKRL+KMYPVRVCGYCPEVH+G SGHKAQ
Sbjct: 301 PDSDAVAPSDVEDIAWLADQTIQAWEQMRRGAKRLIKMYPVRVCGYCPEVHVGSSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPA+VE+CI
Sbjct: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAIVEMCI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAAIPD+YKSTMRMDVGIPLDIKEAEMVV
Sbjct: 421 QAGAAIPDEYKSTMRMDVGIPLDIKEAEMVV 451

[Close]

BLAST of Carg09998-RA vs. TrEMBL
Match: tr|A0A061GQW5|A0A061GQW5_THECC (APO protein 2, chloroplast, putative OS=Theobroma cacao OX=3641 GN=TCM_037039 PE=4 SV=1)

HSP 1 Score: 675.6 bits (1742), Expect = 7.6e-191
Identity = 323/451 (71.62%), Postives = 376/451 (83.37%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           +DC S N+         VK +  P ++    + +  +++F+K  + PGLSLL SL+H S+
Sbjct: 11  VDCGSTNH------LSHVKLVPLPPRIGPSMLSYHSRADFLKLNLYPGLSLLSSLEHRSS 70

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
              K  S+    S K     +  VRCDHPQNADFPRYYS+KEKKPFPVP++ELRRAARER
Sbjct: 71  -KLKLQSEPRAPSRKFHRPCALVVRCDHPQNADFPRYYSRKEKKPFPVPVLELRRAARER 130

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
            KKS+GQP+KPVPPPKNGL VKS++P+AY+V NAR+TLINNLKKLLKVV VHACG+CNEI
Sbjct: 131 AKKSKGQPKKPVPPPKNGLIVKSLVPLAYDVLNARVTLINNLKKLLKVVKVHACGYCNEI 190

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGPVGHPFKSCRG +A+FRKGLHEWT A +ED+ LPV+AYHLYDRLGKRI H ER+SIP
Sbjct: 191 HVGPVGHPFKSCRGQHASFRKGLHEWTYATVEDVLLPVDAYHLYDRLGKRIRHDERFSIP 250

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           RIPAVVELCIQAGV+LPE+  KRRRK IIRI K EFIDADESELPDP PE PLK +LTEI
Sbjct: 251 RIPAVVELCIQAGVNLPEFLTKRRRKTIIRIGKREFIDADESELPDPVPEVPLKAILTEI 310

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PD +VVAP D+E+   LA++TLQAWEQMR+GAK+LM+MYPVRVCGYCPEVH+G SGHKAQ
Sbjct: 311 PDPEVVAPCDEEETILLAEETLQAWEQMRRGAKKLMRMYPVRVCGYCPEVHVGPSGHKAQ 370

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGA KHQQRNGQHGWQ AVLDDLIPPRYVWHVPDV G PLQRELR+FYGQAPAVVEIC+
Sbjct: 371 NCGAHKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVKGLPLQRELRSFYGQAPAVVEICV 430

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAA+PD+YK TMR+D+GIP  ++EAEMVV
Sbjct: 431 QAGAAVPDQYKPTMRLDIGIPTSLREAEMVV 454

[Close]

BLAST of Carg09998-RA vs. TrEMBL
Match: tr|A0A2P5FNP4|A0A2P5FNP4_9ROSA (APO domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_049290 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 4.9e-190
Identity = 322/451 (71.40%), Postives = 379/451 (84.04%), Query Frame = 0


Query: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60
           M+C S + SF  ++  S K +    K+   R+    KSE ++P   PGL  L S QH  N
Sbjct: 1   MECGSGSSSFGAMALFSGKGLASAPKMVPFRVSTSVKSESLRPNPCPGLGFLHSFQHF-N 60

Query: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
              K  SK   SS K+  SY+  +R D+PQN D PRYYS+KEKKPFP+PIVELRRAARER
Sbjct: 61  HKLKVQSK---SSRKMHPSYALVIRADYPQNTDLPRYYSRKEKKPFPIPIVELRRAARER 120

Query: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEI 180
           +KK++G+PRKPVPPPKNG+ VKS IPIAY+V+NARITLINNLKKLL+VVPVHAC +CNEI
Sbjct: 121 IKKNKGKPRKPVPPPKNGMLVKSFIPIAYDVYNARITLINNLKKLLRVVPVHACKWCNEI 180

Query: 181 HVGPVGHPFKSCRGPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIP 240
           HVGP GHPF+SC G NA+ R+GLH+W+ A +EDIFLPV+AYHLYDRLGKRI+H ER+SIP
Sbjct: 181 HVGPTGHPFRSCGGQNASIRRGLHDWSTATVEDIFLPVDAYHLYDRLGKRIAHYERFSIP 240

Query: 241 RIPAVVELCIQAGVDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEI 300
           R+PA+VELCIQAGVD+P++P KRRRKPIIRISKSEF+DADESELPD +PE P +P+LTEI
Sbjct: 241 RLPALVELCIQAGVDVPDFPTKRRRKPIIRISKSEFVDADESELPDLDPEAPKRPILTEI 300

Query: 301 PDSDVVAPSDKEDIAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQ 360
           PD +VV PS++E+   LA +TLQAWEQMR+GA +LMK+YPVRVCGYCPEVHIG SGHKAQ
Sbjct: 301 PDFEVVGPSNEEETTLLAVETLQAWEQMRKGAHKLMKLYPVRVCGYCPEVHIGPSGHKAQ 360

Query: 361 NCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICI 420
           NCGA KHQQRNGQHGWQ AVLDDLIPPRYVWHVPDVNGPPLQR+LR+FYGQAPAVVE+CI
Sbjct: 361 NCGAHKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPLQRDLRSFYGQAPAVVEMCI 420

Query: 421 QAGAAIPDKYKSTMRMDVGIPLDIKEAEMVV 452
           QAGAA+PD+Y+ TMR+DVGIP DIKEAEMVV
Sbjct: 421 QAGAAVPDQYRGTMRLDVGIPTDIKEAEMVV 447

[Close]

BLAST of Carg09998-RA vs. TrEMBL
Match: tr|A0A1U8MTU4|A0A1U8MTU4_GOSHI (APO protein 2, chloroplastic-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107940064 PE=4 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 4.9e-190
Identity = 316/438 (72.15%), Postives = 371/438 (84.70%), Query Frame = 0


Query: 14  SSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISNFDFKAGSKSMISS 73
           S  S++ +  P ++    + +  +++F+K      L+ L S QH  N   K  SK +  S
Sbjct: 4   SPSSMRCLCLPPRMGPSMLSYHSRADFLKL---NSLTSLSSFQH-RNGKLKLQSKPIAPS 63

Query: 74  WKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKKSQGQPRKPVP 133
            K+    +  +RCDHPQNAD PRYYSKKEKKPFPVPIVELRRAARER KKS+GQP+KPVP
Sbjct: 64  RKLHQPCALVIRCDHPQNADLPRYYSKKEKKPFPVPIVELRRAARERFKKSRGQPKKPVP 123

Query: 134 PPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGFCNEIHVGPVGHPFKSCR 193
           PPKNGL VKS++P+AY+VFN RITLINNLKKLLKVV VHAC +CNEIHVGP+GHPFKSCR
Sbjct: 124 PPKNGLIVKSLVPLAYDVFNERITLINNLKKLLKVVKVHACRYCNEIHVGPIGHPFKSCR 183

Query: 194 GPNANFRKGLHEWTKAILEDIFLPVEAYHLYDRLGKRISHQERYSIPRIPAVVELCIQAG 253
           G  A+ RKGLHEWT A +ED+F+PV++YHLYDRLGKRI H ER+SIPR+PAVVELCIQAG
Sbjct: 184 GHRASIRKGLHEWTYATVEDVFVPVDSYHLYDRLGKRIRHDERFSIPRLPAVVELCIQAG 243

Query: 254 VDLPEYPAKRRRKPIIRISKSEFIDADESELPDPEPEEPLKPLLTEIPDSDVVAPSDKED 313
           VDLPE+P KRRRKPIIRI KSEF+DADESELPDP PE PLKP+LTEIPD+++VAP D+E+
Sbjct: 244 VDLPEFPTKRRRKPIIRIGKSEFVDADESELPDPVPEPPLKPILTEIPDTEIVAPRDEEE 303

Query: 314 IAWLADQTLQAWEQMRQGAKRLMKMYPVRVCGYCPEVHIGGSGHKAQNCGAFKHQQRNGQ 373
              LA++TL+AWEQMR+GAK+LM+MYPVRVCGYCPEVH+G SGHKAQNCGA KHQQRNGQ
Sbjct: 304 TIQLAEETLEAWEQMRRGAKKLMRMYPVRVCGYCPEVHVGPSGHKAQNCGAHKHQQRNGQ 363

Query: 374 HGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAVVEICIQAGAAIPDKYKST 433
           HGWQ AVLDDLIPPRYVWHVPDVNGPPLQRELR+FYGQAPAVVEIC+QAGA +PD+YK T
Sbjct: 364 HGWQSAVLDDLIPPRYVWHVPDVNGPPLQRELRSFYGQAPAVVEICVQAGADVPDQYKPT 423

Query: 434 MRMDVGIPLDIKEAEMVV 452
           MR+D+GIP  ++EAEMVV
Sbjct: 424 MRLDIGIPTSLREAEMVV 437

The following BLAST results are available for this feature:

BLAST of Carg09998-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516533.1	3.0e-268	99.56	APO protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022921740.1	5.2e-268	99.33	APO protein 2, chloroplastic [Cucurbita moschata]	[more]
XP_022988576.1	7.7e-264	98.45	APO protein 2, chloroplastic [Cucurbita maxima]	[more]
XP_008443853.1	5.6e-246	90.47	PREDICTED: APO protein 2, chloroplastic [Cucumis melo]	[more]
XP_004146678.1	1.4e-244	89.80	PREDICTED: APO protein 2, chloroplastic isoform X1 [Cucumis sativus] >KGN65165.1...	[more]

BLAST of Carg09998-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57930.2	1.5e-165	62.30	Arabidopsis thaliana protein of unknown function (DUF794)	[more]
AT1G64810.2	3.4e-96	45.33	Arabidopsis thaliana protein of unknown function (DUF794)	[more]
AT5G61930.1	1.4e-81	42.06	Arabidopsis thaliana protein of unknown function (DUF794)	[more]
AT3G21740.1	4.5e-56	37.63	Arabidopsis thaliana protein of unknown function (DUF794)	[more]

BLAST of Carg09998-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8W4A5\|APO2_ARATH	1.1e-163	61.74	APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1	[more]
sp\|Q9XIR4\|APO1_ARATH	6.1e-95	45.33	APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1	[more]
sp\|Q9FH50\|APO3_ARATH	2.5e-80	42.06	APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1	[more]
sp\|Q9LSZ0\|APO4_ARATH	8.1e-55	37.63	APO protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO4 PE=2 SV=2	[more]

BLAST of Carg09998-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B8J0\|A0A1S3B8J0_CUCME	3.7e-246	90.47	APO protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487348 PE=4 SV=1	[more]
tr\|A0A0A0LTB5\|A0A0A0LTB5_CUCSA	9.1e-245	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256740 PE=4 SV=1	[more]
tr\|A0A061GQW5\|A0A061GQW5_THECC	7.6e-191	71.62	APO protein 2, chloroplast, putative OS=Theobroma cacao OX=3641 GN=TCM_037039 PE...	[more]
tr\|A0A2P5FNP4\|A0A2P5FNP4_9ROSA	4.9e-190	71.40	APO domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_049290 ...	[more]
tr\|A0A1U8MTU4\|A0A1U8MTU4_GOSHI	4.9e-190	72.15	APO protein 2, chloroplastic-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023342	APO_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09998	Carg09998	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09998-RA	Carg09998-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09998-RA.three_prime_UTR.1	Carg09998-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09998-RA.CDS.3	Carg09998-RA.CDS.3	CDS
Carg09998-RA.CDS.2	Carg09998-RA.CDS.2	CDS
Carg09998-RA.CDS.1	Carg09998-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09998-RA.five_prime_UTR.2	Carg09998-RA.five_prime_UTR.2	five_prime_UTR
Carg09998-RA.five_prime_UTR.1	Carg09998-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09998-RA.exon.4	Carg09998-RA.exon.4	exon
Carg09998-RA.exon.3	Carg09998-RA.exon.3	exon
Carg09998-RA.exon.2	Carg09998-RA.exon.2	exon
Carg09998-RA.exon.1	Carg09998-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023342	APO domain	PFAM	PF05634	APO_RNA-bind	coord: 80..278 e-value: 4.7E-98 score: 326.4 coord: 317..435 e-value: 1.4E-27 score: 96.4
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 173..258 score: 29.222
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 343..428 score: 31.614
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..137
None	No IPR available	PANTHER	PTHR10388:SF15	APO PROTEIN 2, CHLOROPLASTIC	coord: 33..451
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 33..451