Carg09262-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCCGAAGCCGAACCACCCGCAGCGGCGATTAGTCGACAATTGTCAAAAGGGATCGATGCCGAGCATTTCGGCCCTCTATTCCATAGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTACGTCCCTGATAGTATTCATGGCCTTACTTAATTTTCTTTCACAAATTTTTGTTCCGTTCGTCGGCCTTACAGTATTCTCTTCATGTATGTGCTTCGCCATATGATTCTCATGGAATTTTTTTCTGAGTTTTTTTTTTTTTTTTTTTCGATTTGTTATTCCACGAGATGCGTTCTAAATTATGGTCGGAATTTGTTTAAGGCGCTCTCGAGTTGTGGACTGAATTCAATTTTTGTGGTTGATTGTCGTCTTTTTGGCTGGGGGATGGGAAGTTGATGCTATAGTTTTACTGGAATTAGCTGAACTTTGTCACTGTGATGGTGAGAAATGAAGTAAACAATCTTATCATGTTCAGATTTTTTTATTTCTGATATTCCATTATACAGTGTTCATAGTTGTAATTGATGAGGATCGAGACTCTTTAAGTTTAAATGAAGTTCTGTTTAGAAGTAACTGTCTGATTAATATAGGCATGAATTTATAAACCATTTTAGGAGTTGAGATCTGATGAAATCTCTTGGCCTTAATTTCTCCTATCCACCTGAAGTTTCTTCTTCTACTATCTAACTTTGTTTTGTTCCCACTCTTGGAGGCAGAGTGGAGATAACCGGATTAAAGTAGAAGGTAAAAGAATGGTGGATGGATGGATGGATGGAAACTCACCAACATGGTTCACTCTTAAACCAATAGATTTATTTTGATTTCTAGTTCATCGTCATGTCAAATTCTTAGAATTAACAATACAAAAGTAAGGGATTCCAATACTGAATTCAAATAGGACTCGAAGTTTCAATATCCTCTTAGAACGTATGTTACTGTTTGAATCTGATACTTTATTGGATTGGATGTGTCAATTCTGACAAATTGTTGATTCAAAATTCTTGAGAGGGAAATTGACGTTTTAGTTGCGTGTTTGAAACATCGGCCCTCCATTTCCTCGCTCACCATCTTTGCCAAAATATTGATACTTTCGTTTTTACTTCGGTCCACGATCAATTTTCTGTCCACACATTCTCCATTGACACCATTCTACAACATGTCCACCTCCTCTGACCAGTAAAAATGTGTCATCTTTTACCATATTTTGTTTGAGAGGATGCGTTCTGACATTACTTCAAAATGACATGTTATCGTTCATAGGTGTATGATTTGACGTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGTATGGTATGCTTGTACTTTGTAATGGATTCTTCTCTCACAAATCTGAACACTGCACTTTTTTGTCCCATCAAAGGCAGAGATGCCACAGATGATTTCGAAGATGCCGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTTGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAACAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGGTTCCTATTGCAGTACTTGGTATTTCTGTAGTACTTGGCTGGTTATACTTGCTCAAAAAGTGA TCCGAAGCCGAACCACCCGCAGCGGCGATTAGTCGACAATTGTCAAAAGGGATCGATGCCGAGCATTTCGGCCCTCTATTCCATAGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTGTATGATTTGACGTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGTATGGTATGCTTGTACTTTGTAATGGATTCTTCTCTCACAAATCTGAACACTGCACTTTTTTGTCCCATCAAAGGCAGAGATGCCACAGATGATTTCGAAGATGCCGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTTGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAACAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGGTTCCTATTGCAGTACTTGGTATTTCTGTAGTACTTGGCTGGTTATACTTGCTCAAAAAGTGA ATGCCGAGCATTTCGGCCCTCTATTCCATAGAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTGTATGATTTGACGTCATATTTGGATGAGCATCCTGGTGGAGATGATGTTATTGTGGCTGCAACTGGTATGGTATGCTTGTACTTTGTAATGGATTCTTCTCTCACAAATCTGAACACTGCACTTTTTTGTCCCATCAAAGGCAGAGATGCCACAGATGATTTCGAAGATGCCGGTCATAGCAAAGATGCTCGAGAGCTGATGGAGAAGTTCTATATCGGCGAGCTTGATCCTTCTTCCTCAGCGATCCCAGAACTCGAAACAAAAGAACCAGATGGTTATGCAGCTCGGGTTCAGACCTTGACAAAGCAATACTGGGGGGTTCCTATTGCAGTACTTGGTATTTCTGTAGTACTTGGCTGGTTATACTTGCTCAAAAAGTGA MPSISALYSIEEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGMVCLYFVMDSSLTNLNTALFCPIKGRDATDDFEDAGHSKDARELMEKFYIGELDPSSSAIPELETKEPDGYAARVQTLTKQYWGVPIAVLGISVVLGWLYLLKK
BLAST of Carg09262-RA vs. NCBI nr
Match: XP_022961879.1 (cytochrome b5 [Cucurbita moschata]) HSP 1 Score: 252.7 bits (644), Expect = 8.3e-64 Identity = 129/156 (82.69%), Postives = 130/156 (83.33%), Query Frame = 0
BLAST of Carg09262-RA vs. NCBI nr
Match: XP_023545611.1 (cytochrome b5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63 Identity = 129/156 (82.69%), Postives = 130/156 (83.33%), Query Frame = 0
BLAST of Carg09262-RA vs. NCBI nr
Match: XP_022997294.1 (cytochrome b5 [Cucurbita maxima]) HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61 Identity = 123/156 (78.85%), Postives = 129/156 (82.69%), Query Frame = 0
BLAST of Carg09262-RA vs. NCBI nr
Match: XP_004144166.1 (PREDICTED: cytochrome b5 isoform A [Cucumis sativus] >KGN47656.1 hypothetical protein Csa_6G366540 [Cucumis sativus]) HSP 1 Score: 217.2 bits (552), Expect = 3.8e-53 Identity = 113/156 (72.44%), Postives = 118/156 (75.64%), Query Frame = 0
BLAST of Carg09262-RA vs. NCBI nr
Match: XP_022131367.1 (cytochrome b5 [Momordica charantia]) HSP 1 Score: 216.1 bits (549), Expect = 8.6e-53 Identity = 108/156 (69.23%), Postives = 120/156 (76.92%), Query Frame = 0
BLAST of Carg09262-RA vs. TAIR10
Match: AT1G26340.1 (cytochrome B5 isoform A) HSP 1 Score: 154.5 bits (389), Expect = 5.6e-38 Identity = 78/159 (49.06%), Postives = 105/159 (66.04%), Query Frame = 0
BLAST of Carg09262-RA vs. TAIR10
Match: AT2G32720.1 (cytochrome B5 isoform B) HSP 1 Score: 112.1 bits (279), Expect = 3.2e-25 Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 0
BLAST of Carg09262-RA vs. TAIR10
Match: AT5G53560.1 (cytochrome B5 isoform E) HSP 1 Score: 109.0 bits (271), Expect = 2.7e-24 Identity = 59/154 (38.31%), Postives = 90/154 (58.44%), Query Frame = 0
BLAST of Carg09262-RA vs. TAIR10
Match: AT5G48810.1 (cytochrome B5 isoform D) HSP 1 Score: 105.1 bits (261), Expect = 3.9e-23 Identity = 55/151 (36.42%), Postives = 84/151 (55.63%), Query Frame = 0
BLAST of Carg09262-RA vs. TAIR10
Match: AT2G46650.1 (cytochrome B5 isoform C) HSP 1 Score: 97.4 bits (241), Expect = 8.1e-21 Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 0
BLAST of Carg09262-RA vs. Swiss-Prot
Match: sp|Q9FDW8|CYB5A_ARATH (Cytochrome b5 isoform A OS=Arabidopsis thaliana OX=3702 GN=CB5-A PE=1 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 1.0e-36 Identity = 78/159 (49.06%), Postives = 105/159 (66.04%), Query Frame = 0
BLAST of Carg09262-RA vs. Swiss-Prot
Match: sp|O48845|CYB5B_ARATH (Cytochrome b5 isoform B OS=Arabidopsis thaliana OX=3702 GN=CYTB5-B PE=1 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 5.7e-24 Identity = 56/146 (38.36%), Postives = 90/146 (61.64%), Query Frame = 0
BLAST of Carg09262-RA vs. Swiss-Prot
Match: sp|P40934|CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis OX=3715 GN=CYB5 PE=1 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 9.7e-24 Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 0
BLAST of Carg09262-RA vs. Swiss-Prot
Match: sp|Q42342|CYB5E_ARATH (Cytochrome b5 isoform E OS=Arabidopsis thaliana OX=3702 GN=CYTB5-E PE=1 SV=2) HSP 1 Score: 109.0 bits (271), Expect = 4.8e-23 Identity = 59/154 (38.31%), Postives = 90/154 (58.44%), Query Frame = 0
BLAST of Carg09262-RA vs. Swiss-Prot
Match: sp|P49100|CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0108800 PE=2 SV=2) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 55/148 (37.16%), Postives = 89/148 (60.14%), Query Frame = 0
BLAST of Carg09262-RA vs. TrEMBL
Match: tr|A0A0A0KIR1|A0A0A0KIR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G366540 PE=3 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 2.5e-53 Identity = 113/156 (72.44%), Postives = 118/156 (75.64%), Query Frame = 0
BLAST of Carg09262-RA vs. TrEMBL
Match: tr|A0A1S3BCR4|A0A1S3BCR4_CUCME (cytochrome b5 OS=Cucumis melo OX=3656 GN=LOC103488463 PE=3 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 4.8e-52 Identity = 109/156 (69.87%), Postives = 118/156 (75.64%), Query Frame = 0
BLAST of Carg09262-RA vs. TrEMBL
Match: tr|A0A1U8MC43|A0A1U8MC43_GOSHI (cytochrome b5-like OS=Gossypium hirsutum OX=3635 GN=LOC107936222 PE=3 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 2.6e-42 Identity = 88/159 (55.35%), Postives = 111/159 (69.81%), Query Frame = 0
BLAST of Carg09262-RA vs. TrEMBL
Match: tr|A0A061E9I3|A0A061E9I3_THECC (Cytochrome B5, n6,ATCB5-A,CB5-A OS=Theobroma cacao OX=3641 GN=TCM_011490 PE=3 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41 Identity = 88/159 (55.35%), Postives = 113/159 (71.07%), Query Frame = 0
BLAST of Carg09262-RA vs. TrEMBL
Match: tr|A0A2I4H8C1|A0A2I4H8C1_9ROSI (cytochrome b5 OS=Juglans regia OX=51240 GN=LOC109014390 PE=3 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.7e-41 Identity = 90/158 (56.96%), Postives = 113/158 (71.52%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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