Carg09257-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAAATACTCGAACGATACGAGAGATATTCTTTCGTGGGTAAGCAGCAAACCGCAGCTTCTATATCGAAATTTTCTCATGAAGATTTGACACTCGAGTATCACTGACTCAAGTCGAAAATCGAACTCTTACAACGAAACAACAGGTACGTTATATACCAATGTCTTAAACGTCGACACCGATAGATTTTCGCATTCACATTAGCAACAGTTTTCATGATATCGAGACGTCAACGAAATTTAATACCCGTCATCAAATCGCATCGAATTTCAAAGCTTTCAAAAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGATTTCAGTCATTACATGGGAGAAGATTTGGATTCAATGAGCGTCCAAGAACTGCATAACTTGGAACAACAAATGGACACAGCACTGAAACATGTTCGATCCAGAAAAGTAGGGTTGTTCGTATTGTCCGATGTTTTTGTTTGGATTTATTTATTTATTTACCGTTTTTAATTTTATTTTTAATTATTGATTAATTATTTTATATATTTATTGGATTATTTTTCAGAACCAACTTATATGTGATTCCATCTTACACTTCAAAGAAAGGCAAATCCTCTTTATTTTCCCTTTATTTTTATTTTTTTTAAAAAAAAACAGTTTATTTATTAATTATTATTATTATTTCATTAATTTATTTATTTTCTTTTATATATATATATATATATACAGGAAAGAACAATACAGGAGCAAAATTCCCTACTGGCAAAGCAGGTGAGTTTTAAGCACTTTTTAAAAGCGATTCTAAGAAAAACTGATCGATCGATTTTTATTTATCTCGAAACATGAGACCTTAGAAGACAAAAAGAAATCACGAAATGGCATATTTTATATTTGAACGATAGCGACTGTTCGGGTATTATATACAAATTTTTGAACCCGATAGGAGAACAACGGGTGAACGGAAGGGAAAAGATTAACGATAAACGTAATCTGTTAGATTAAGCTTTTGAGTTTAATGATAGTTTACGAGTAATTGTGATTATAATTACATTTTTATTTACGAATTTGTGAGAAAAATAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCAGAAGAGGCAGAATGGGAAGAGCAGCAACACCATTGCTACAATGCCTTGTCTTTCTTGTACCAATCAGCTCCTAATCATCCCTCTCTAAACATTGGGTAA ATGGAGAAAATACTCGAACGATACGAGAGATATTCTTTCGTGGGTAAGCAGCAAACCGCAGCTTCTATATCGAAATTTTCTCATGAAGATTTGACACTCGATCATTACATGGGAGAAGATTTGGATTCAATGAGCGTCCAAGAACTGCATAACTTGGAACAACAAATGGACACAGCACTGAAACATGTTCGATCCAGAAAAGAAAGAACAATACAGGAGCAAAATTCCCTACTGGCAAAGCAGAAAAATAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCAGAAGAGGCAGAATGGGAAGAGCAGCAACACCATTGCTACAATGCCTTGTCTTTCTTGTACCAATCAGCTCCTAATCATCCCTCTCTAAACATTGGGTAA ATGGAGAAAATACTCGAACGATACGAGAGATATTCTTTCGTGGGTAAGCAGCAAACCGCAGCTTCTATATCGAAATTTTCTCATGAAGATTTGACACTCGATCATTACATGGGAGAAGATTTGGATTCAATGAGCGTCCAAGAACTGCATAACTTGGAACAACAAATGGACACAGCACTGAAACATGTTCGATCCAGAAAAGAAAGAACAATACAGGAGCAAAATTCCCTACTGGCAAAGCAGAAAAATAAGATCAAGGAGAAGGAGAAGAGTGTAGCAATGGCAGAAGAGGCAGAATGGGAAGAGCAGCAACACCATTGCTACAATGCCTTGTCTTTCTTGTACCAATCAGCTCCTAATCATCCCTCTCTAAACATTGGGTAA MEKILERYERYSFVGKQQTAASISKFSHEDLTLDHYMGEDLDSMSVQELHNLEQQMDTALKHVRSRKERTIQEQNSLLAKQKNKIKEKEKSVAMAEEAEWEEQQHHCYNALSFLYQSAPNHPSLNIG
BLAST of Carg09257-RA vs. NCBI nr
Match: XP_023547090.1 (truncated transcription factor CAULIFLOWER A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 176.4 bits (446), Expect = 6.1e-41 Identity = 102/157 (64.97%), Postives = 109/157 (69.43%), Query Frame = 0
BLAST of Carg09257-RA vs. NCBI nr
Match: XP_008445435.1 (PREDICTED: truncated transcription factor CAULIFLOWER A [Cucumis melo]) HSP 1 Score: 136.3 bits (342), Expect = 7.0e-29 Identity = 85/157 (54.14%), Postives = 97/157 (61.78%), Query Frame = 0
BLAST of Carg09257-RA vs. NCBI nr
Match: XP_023002154.1 (truncated transcription factor CAULIFLOWER A-like [Cucurbita maxima]) HSP 1 Score: 134.0 bits (336), Expect = 3.5e-28 Identity = 95/157 (60.51%), Postives = 107/157 (68.15%), Query Frame = 0
BLAST of Carg09257-RA vs. NCBI nr
Match: XP_022951531.1 (truncated transcription factor CAULIFLOWER A-like [Cucurbita moschata] >XP_023537553.1 truncated transcription factor CAULIFLOWER A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 127.1 bits (318), Expect = 4.3e-26 Identity = 95/157 (60.51%), Postives = 107/157 (68.15%), Query Frame = 0
BLAST of Carg09257-RA vs. NCBI nr
Match: XP_022132007.1 (truncated transcription factor CAULIFLOWER A-like [Momordica charantia]) HSP 1 Score: 104.8 bits (260), Expect = 2.3e-19 Identity = 63/111 (56.76%), Postives = 74/111 (66.67%), Query Frame = 0
BLAST of Carg09257-RA vs. TAIR10
Match: AT1G69120.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 76.6 bits (187), Expect = 1.2e-14 Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0
BLAST of Carg09257-RA vs. TAIR10
Match: AT1G26310.1 (K-box region and MADS-box transcription factor family protein ) HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13 Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = 0
BLAST of Carg09257-RA vs. TAIR10
Match: AT5G60910.1 (AGAMOUS-like 8) HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10 Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 0
BLAST of Carg09257-RA vs. TAIR10
Match: AT3G30260.1 (AGAMOUS-like 79) HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06 Identity = 32/95 (33.68%), Postives = 52/95 (54.74%), Query Frame = 0
BLAST of Carg09257-RA vs. TAIR10
Match: AT4G11880.1 (AGAMOUS-like 14) HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04 Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 0
BLAST of Carg09257-RA vs. Swiss-Prot
Match: sp|Q96356|2AP1_BRAOT (Floral homeotic protein APETALA 1-2 OS=Brassica oleracea var. italica OX=36774 GN=2AP1 PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-14 Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0
BLAST of Carg09257-RA vs. Swiss-Prot
Match: sp|B4YPW6|AP1A_BRAOA (Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. alboglabra OX=3714 GN=AP1A PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-14 Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0
BLAST of Carg09257-RA vs. Swiss-Prot
Match: sp|Q8GTF5|AP1A_BRAOB (Floral homeotic protein APETALA 1 A OS=Brassica oleracea var. botrytis OX=3715 GN=AP1A PE=2 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 7.4e-14 Identity = 52/109 (47.71%), Postives = 65/109 (59.63%), Query Frame = 0
BLAST of Carg09257-RA vs. Swiss-Prot
Match: sp|Q96355|1AP1_BRAOT (Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var. italica OX=36774 GN=1AP1 PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.7e-14 Identity = 53/133 (39.85%), Postives = 68/133 (51.13%), Query Frame = 0
BLAST of Carg09257-RA vs. Swiss-Prot
Match: sp|Q39371|3AP1_BRAOL (Floral homeotic protein APETALA 1 OS=Brassica oleracea OX=3712 GN=AP1 PE=2 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 9.7e-14 Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 0
BLAST of Carg09257-RA vs. TrEMBL
Match: tr|A0A1S3BCQ3|A0A1S3BCQ3_CUCME (truncated transcription factor CAULIFLOWER A OS=Cucumis melo OX=3656 GN=LOC103488455 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29 Identity = 85/157 (54.14%), Postives = 97/157 (61.78%), Query Frame = 0
BLAST of Carg09257-RA vs. TrEMBL
Match: tr|A0A0A0KGY7|A0A0A0KGY7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G367090 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18 Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 0
BLAST of Carg09257-RA vs. TrEMBL
Match: tr|A0A2C9WH13|A0A2C9WH13_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G025600 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 9.1e-17 Identity = 69/157 (43.95%), Postives = 86/157 (54.78%), Query Frame = 0
BLAST of Carg09257-RA vs. TrEMBL
Match: tr|A0A182BPB8|A0A182BPB8_9ROSI (APETALA1 OS=Plukenetia volubilis OX=316893 GN=AP1 PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.5e-16 Identity = 65/157 (41.40%), Postives = 85/157 (54.14%), Query Frame = 0
BLAST of Carg09257-RA vs. TrEMBL
Match: tr|A0A1U8M7T9|A0A1U8M7T9_GOSHI (truncated transcription factor CAULIFLOWER D-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107934869 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16 Identity = 62/144 (43.06%), Postives = 81/144 (56.25%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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