Carg09242-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTTCTCCATCTTGGTTCCTCTCCTTTCTGCAACCAACTACCTCTCCCCAACCCTAACAATCGACATTCATCGCCACTCTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTGTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTACATTCCCACCAATATATTATTTATATATATACATTTTTAATATTCGTAGACTCCAGCGATTTGATGTTTATATGTCTGTGTATCTATAAGTCGTTTTCGTGGACCATTCTTGTCAAAGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA TGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTTCTCCATCTTGGTTCCTCTCCTTTCTGCAACCAACTACCTCTCCCCAACCCTAACAATCGACATTCATCGCCACTCTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTGTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA ATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA MSDLVARTGRHQQRYDAGCRLIAGLVKMRLSAMSFTFLFTTLVEIDCFDFHCGSCLGIGGL
BLAST of Carg09242-RA vs. NCBI nr
Match: XP_008445383.1 (PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis melo]) HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. NCBI nr
Match: XP_011657455.1 (PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis sativus]) HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. NCBI nr
Match: XP_022132288.1 (nudix hydrolase 16, mitochondrial isoform X1 [Momordica charantia] >XP_022132289.1 nudix hydrolase 16, mitochondrial isoform X1 [Momordica charantia]) HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. NCBI nr
Match: XP_022961746.1 (nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. NCBI nr
Match: XP_023545558.1 (nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. TAIR10
Match: AT3G12600.1 (nudix hydrolase homolog 16) HSP 1 Score: 42.0 bits (97), Expect = 1.6e-04 Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0
BLAST of Carg09242-RA vs. TrEMBL
Match: tr|A0A1S3BDF1|A0A1S3BDF1_CUCME (nudix hydrolase 16, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488433 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05 Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. TrEMBL
Match: tr|A0A2I0VRP1|A0A2I0VRP1_9ASPA (Nudix hydrolase 16, mitochondrial OS=Dendrobium catenatum OX=906689 GN=NUDT16 PE=4 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 8.5e-05 Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. TrEMBL
Match: tr|A0A200Q5E8|A0A200Q5E8_9MAGN (NUDIX hydrolase domain OS=Macleaya cordata OX=56857 GN=BVC80_8999g20 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04 Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of Carg09242-RA vs. TrEMBL
Match: tr|A0A2N9HZY3|A0A2N9HZY3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45181 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04 Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0
BLAST of Carg09242-RA vs. TrEMBL
Match: tr|A0A2P4I7C0|A0A2P4I7C0_QUESU (Nudix hydrolase 16, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_67153 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04 Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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