Carg09242 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09242
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nudix hydrolase 16, mitochondrial
Location	Cucurbita_argyrosperma_scaffold_018 : 174121 .. 174778 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTTCTCCATCTTGGTTCCTCTCCTTTCTGCAACCAACTACCTCTCCCCAACCCTAACAATCGACATTCATCGCCACTCTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTGTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTACATTCCCACCAATATATTATTTATATATATACATTTTTAATATTCGTAGACTCCAGCGATTTGATGTTTATATGTCTGTGTATCTATAAGTCGTTTTCGTGGACCATTCTTGTCAAAGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA

mRNA sequence

TGAATCCACCGGATTCTCCCAAACCCTTCTGGACCCACTGTTTTCCCTTTTGACCATCAAATCCCCTCCCCTGTTTTGACCCAACCCCACCGCCAGATCCGCTTCAGCCGCAACCTTCTCCATCTTGGTTCCTCTCCTTTCTGCAACCAACTACCTCTCCCCAACCCTAACAATCGACATTCATCGCCACTCTTCCATGGAGTTTGAGATCGTCTTTGACTGTCCATTCTGAGAGAGATTGACAATGGCGGAATTTGTCCTCTGCTGTAGCGATGTGCAGGATTTTGCATTCGTCTCAAAACGCTGAACCCGACGGACGATAGTTTTTGTATACGTATATATTTGTTTAGTATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA

Coding sequence (CDS)

ATGTCTGATTTGGTGGCCCGCACTGGACGGCATCAGCAGCGGTACGATGCCGGTTGTCGCCTTATTGCTGGGTTGGTGAAAATGAGGTTGTCGGCAATGTCATTTACGTTTCTTTTTACTACCCTTGTGGAAATTGACTGCTTTGATTTTCACTGTGGTTCTTGTTTGGGTATTGGTGGTTTGTGA

Protein sequence

MSDLVARTGRHQQRYDAGCRLIAGLVKMRLSAMSFTFLFTTLVEIDCFDFHCGSCLGIGGL

Homology

[Close]

BLAST of Carg09242 vs. NCBI nr
Match: XP_008445383.1 (PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. NCBI nr
Match: XP_011657455.1 (PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. NCBI nr
Match: XP_022132288.1 (nudix hydrolase 16, mitochondrial isoform X1 [Momordica charantia] >XP_022132289.1 nudix hydrolase 16, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. NCBI nr
Match: XP_022961746.1 (nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. NCBI nr
Match: XP_023545558.1 (nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TAIR10
Match: AT3G12600.1 (nudix hydrolase homolog 16)

HSP 1 Score: 42.0 bits (97), Expect = 1.6e-04
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          M DLVARTGR QQRY+ G RL+AG +  R
Sbjct: 1  MCDLVARTGRLQQRYEDGSRLVAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TrEMBL
Match: tr|A0A1S3BDF1|A0A1S3BDF1_CUCME (nudix hydrolase 16, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488433 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRYDAGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYDAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TrEMBL
Match: tr|A0A2I0VRP1|A0A2I0VRP1_9ASPA (Nudix hydrolase 16, mitochondrial OS=Dendrobium catenatum OX=906689 GN=NUDT16 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRY+AGCRLIAG +  R
Sbjct: 1  MSDLVARTGRHQQRYEAGCRLIAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TrEMBL
Match: tr|A0A200Q5E8|A0A200Q5E8_9MAGN (NUDIX hydrolase domain OS=Macleaya cordata OX=56857 GN=BVC80_8999g20 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-04
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          MSDLVARTGRHQQRY+AGCRL+AG +  R
Sbjct: 1  MSDLVARTGRHQQRYEAGCRLVAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TrEMBL
Match: tr|A0A2N9HZY3|A0A2N9HZY3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45181 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          M DLVARTGRHQQRYDAGCRL+AG +  R
Sbjct: 1  MCDLVARTGRHQQRYDAGCRLVAGCIPFR 29

[Close]

BLAST of Carg09242 vs. TrEMBL
Match: tr|A0A2P4I7C0|A0A2P4I7C0_QUESU (Nudix hydrolase 16, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_67153 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-04
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MSDLVARTGRHQQRYDAGCRLIAGLVKMR 30
          M DLVARTGRHQQRYDAGCRL+AG +  R
Sbjct: 1  MCDLVARTGRHQQRYDAGCRLVAGCIPFR 29

The following BLAST results are available for this feature:

BLAST of Carg09242 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445383.1	4.4e-05	86.21	PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis melo]	[more]
XP_011657455.1	4.4e-05	86.21	PREDICTED: nudix hydrolase 16, mitochondrial isoform X1 [Cucumis sativus]	[more]
XP_022132288.1	4.4e-05	86.21	nudix hydrolase 16, mitochondrial isoform X1 [Momordica charantia] >XP_022132289...	[more]
XP_022961746.1	4.4e-05	86.21	nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita moschata]	[more]
XP_023545558.1	4.4e-05	86.21	nudix hydrolase 16, mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg09242 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12600.1	1.6e-04	65.52	nudix hydrolase homolog 16	[more]

BLAST of Carg09242 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg09242 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDF1\|A0A1S3BDF1_CUCME	2.9e-05	86.21	nudix hydrolase 16, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A2I0VRP1\|A0A2I0VRP1_9ASPA	8.5e-05	82.76	Nudix hydrolase 16, mitochondrial OS=Dendrobium catenatum OX=906689 GN=NUDT16 PE...	[more]
tr\|A0A200Q5E8\|A0A200Q5E8_9MAGN	1.1e-04	79.31	NUDIX hydrolase domain OS=Macleaya cordata OX=56857 GN=BVC80_8999g20 PE=4 SV=1	[more]
tr\|A0A2N9HZY3\|A0A2N9HZY3_FAGSY	1.5e-04	79.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45181 PE=4 SV=1	[more]
tr\|A0A2P4I7C0\|A0A2P4I7C0_QUESU	1.5e-04	79.31	Nudix hydrolase 16, mitochondrial OS=Quercus suber OX=58331 GN=CFP56_67153 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09242-RA	Carg09242-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg09242	Silver-seed gourd	carcarB164
Carg09242	Cucumber (Gy14) v2	carcgybB0155
Carg09242	Cucumber (Gy14) v1	carcgyB0169
Carg09242	Cucurbita maxima (Rimu)	carcmaB0185
Carg09242	Cucurbita maxima (Rimu)	carcmaB0189
Carg09242	Cucurbita moschata (Rifu)	carcmoB0194
Carg09242	Cucurbita moschata (Rifu)	carcmoB0196
Carg09242	Cucurbita pepo (Zucchini)	carcpeB0199
Carg09242	Cucurbita pepo (Zucchini)	carcpeB0207
Carg09242	Wild cucumber (PI 183967)	carcpiB0162
Carg09242	Cucumber (Chinese Long) v2	carcuB0157
Carg09242	Cucumber (Chinese Long) v3	carcucB0165
Carg09242	Bottle gourd (USVL1VR-Ls)	carlsiB129
Carg09242	Melon (DHL92) v3.5.1	carmeB0142
Carg09242	Melon (DHL92) v3.6.1	carmedB0146
Carg09242	Watermelon (Charleston Gray)	carwcgB0138
Carg09242	Watermelon (97103) v1	carwmB0134
Carg09242	Watermelon (97103) v2	carwmbB0150