Carg08387-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08387-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nifU-like protein 3, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_015 : 1344807 .. 1347502 (-)
Sequence length	900

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCAATTTCCATCCACAAAATTTGGCCACACCAATGACGATCTTCATCTTTATCACCCAATCACTGTGTTTCCCTTCTGCAAAATTCATAACCCAAACACAATGCCCTAACTCAGCACCGCATCCCACTGTTTATGAGTCTTCATAGCTCGCATTCCAATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGGTTGGTTTCTTGATTCTGTTTTTGATCTTCTGCAATTCCCTTGTTTTGTTTGTGCAAGTTTTTATTAGGCAACTGATTGGGCGGTATTGTTTGAATCAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGTAGCATTTCTGGATTTTGCTTTTACGATGATCCATAACGAATATGAAAATTTGGCTATTCTTGGAGTGATGGGATGATAGATTCAAGATCATGTAACAGTGTTGGATGCCATTTCTCTTCCAAATTCCAATTTCCTGCTTCTTTTCTCTACTAAATGCTTATAACTGAAACCATTAGGTTTGTAACATTCTGATTGAACTTATCCGGTATCTGTGAGATCCTACGTTGGTTGGGGAGGAGAATGAAAAATTCTTTATAAGGGCATGGAAACCTCCCCTAGCAGACGCATTTTAAATGCTAGAGAAACCCAAAAGAGAAAACCTAAAGAGGACAATATCTACTAGCGTTGGGCTTGAGCCGTTACAAATGGTATCAGAGCCAGAAACTGGGCGATTTTTTAGTGAGGAGGTGTGCCAGCAATGACGCTAGGCTTCGAAGGGGGGTGGATTGGGGAGTCTCATATCAATTGGAGAAGGGAACGAGTGCCAGCGAGAACGCTGGACCCCGAAGGGGGGTGGATTATGAGATCCCACATCAGTTGAGTTGGAGAACGAAGCATTCTTTATGAGGGTGTGGAAACCTCCCCTAGCATAGCAGACACGTTTGAAAAGCCATGAGGAGAAAGAGAAAATCCAAAGAGGACAATATCGGCTAGCGGTGGACTTAGGACGTTACAAATAGATGTGTCAGCGAGGAGGCTGAGCCCTGAAGGGGGTGGACACAAGGTGGTGTGCCAGCAAGAACACTAGGCTCCGAAGGGAGATAGATCGGGGGGTCCCACATCGATTGGAGAAGGGAACAAGTGCCAGTGAGGACGCTAGACCCCGAAGGGGGTGGATAGTGAGATCCCACATCGGATGGGGGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCCCCTAGCAGACGGCGTTTTAAATGCCTTGAGGAGAAACCCGTTCATCCTAGTTCATAGTCTCTAGTCATCCAGTTACTATAGTAAGTAAGAAACTATTAAGAACAAACTAGTAACTAAAACTAATTAACAAATTTTGACTGGAATTTGATGGGTTTTGGTGTTGGTAAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGGTCAGATTCTCTGTTCAATTTTCTGCTATGTTACGAATTTAATAACACTTGCATAGATGATCATAGAATTTCTTTGCAACAACTTAGCTGATACACGAAGCATGCTAATTTGGTTTGTTATGAGTTCTACCTTTTTTATATGTTTAGATACTGCTCATTATATCTTCTTTGGGCCTTTCTTTCTAGACTTCCTTTCAAGATTTTAAAACGCGTCTATTAGGGAAAGGTTTCCACACAAACAATGTTTCGTTCTCCTCTCCATCCAACCGACGTAGGAATTCACAATCCACCCTCCTTGGAGACTTAGCATCATTGCTAGCACAAAACCCAGGCACTGATACCATTTGTAATGGCTCAAGCCCACCGTTAATAAATATTGTCCTCTTTAGGCTTTCTCTTTTGGACTTCCCCTCATAAAGAATGTTCCACACCCTCATAAACAATGTTTCGTTCTCCTCTTCAACTGACGTGGGATTTCACAAATCCACCCATTTGAGGCCCAGCGTTCTCGCTGATACTCGTTTTTCTCTCTAATCGATGTGGGATCTCACGCATTATTATATATATATATATATATGATCGACTAAAAAGATTAGAGGTTTGAAAGTCAGGTATGTTTTTCAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAGAACCAGCTTTGATTCATACACGCTCACCTCATTTTCTCTTTTCATTTCATTATTTTC

mRNA sequence

TCCCAATTTCCATCCACAAAATTTGGCCACACCAATGACGATCTTCATCTTTATCACCCAATCACTGTGTTTCCCTTCTGCAAAATTCATAACCCAAACACAATGCCCTAACTCAGCACCGCATCCCACTGTTTATGAGTCTTCATAGCTCGCATTCCAATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAGAACCAGCTTTGATTCATACACGCTCACCTCATTTTCTCTTTTCATTTCATTATTTTC

Coding sequence (CDS)

ATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAG

Protein sequence

MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCRRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE

Homology

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BLAST of Carg08387-RA vs. NCBI nr
Match: XP_022929559.1 (nifU-like protein 3, chloroplastic [Cucurbita moschata])

HSP 1 Score: 413.7 bits (1062), Expect = 4.1e-112
Identity = 218/227 (96.04%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKS         RRFLGFNSSCTR
Sbjct: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
           RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Carg08387-RA vs. NCBI nr
Match: XP_022997561.1 (nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.4 bits (1056), Expect = 2.0e-111
Identity = 217/227 (95.59%), Postives = 217/227 (95.59%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVAAFSTRAQALKPTPTTA LYRSPSERTSASHLSFFKS         RRFLGFNSSCTR
Sbjct: 1   MVAAFSTRAQALKPTPTTAPLYRSPSERTSASHLSFFKSSFFRGQFCSRRFLGFNSSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
           RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

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BLAST of Carg08387-RA vs. NCBI nr
Match: XP_004148324.1 (PREDICTED: nifU-like protein 3, chloroplastic [Cucumis sativus] >KGN61156.1 hypothetical protein Csa_2G060370 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 1.8e-99
Identity = 197/227 (86.78%), Postives = 203/227 (89.43%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVA FSTRAQ  K TP  ATLYRSPS   S S+LSFFKS         R FL FNSSCTR
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYRSPSHPASPSYLSFFKSSFFRGQFCSRHFLRFNSSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
            RHLGNVVSPSCVLPLTEENVEKVLDEVRP LMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRHLGNVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Carg08387-RA vs. NCBI nr
Match: XP_008451517.1 (PREDICTED: nifU-like protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 365.9 bits (938), Expect = 9.7e-98
Identity = 195/227 (85.90%), Postives = 201/227 (88.55%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVA FSTRAQ  K TP  ATLY S S  TS SHLS FKS         RRFL FN SCTR
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
            R LGNV+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Carg08387-RA vs. NCBI nr
Match: XP_022153286.1 (nifU-like protein 3, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 188/244 (77.05%), Postives = 198/244 (81.15%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERT----SASHLSFFK-------------SXXXX 60
           MV A STR Q L  TPT    YRSPS+ T    SASHL  FK             S    
Sbjct: 1   MVGAISTRPQPLNATPTP---YRSPSDPTSASASASHLPLFKISVPSSRRYSSKQSSFFR 60

Query: 61  XXXXXRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHE 120
                RRFLG  S+ TRRR +G+VVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHE
Sbjct: 61  GQFCGRRFLGLKSNFTRRRQIGSVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHE 120

Query: 121 IDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVE 180
           IDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVE
Sbjct: 121 IDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVE 180

Query: 181 KLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAV 228
           K+LAEIRPYL GTGGGILEL+EI DY+VKVRLSGPAAGVMTVRVALTQKLREKIP+IAAV
Sbjct: 181 KVLAEIRPYLGGTGGGILELVEISDYIVKVRLSGPAAGVMTVRVALTQKLREKIPSIAAV 240

[Close]

BLAST of Carg08387-RA vs. TAIR10
Match: AT4G25910.1 (NFU domain protein 3)

HSP 1 Score: 258.8 bits (660), Expect = 3.0e-69
Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 71  SCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMG 130
           SCV+PLTEENVE+VLDEVRPSLMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMG
Sbjct: 79  SCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMG 138

Query: 131 IETRLRDKIPEILEVEQIIDTET-GLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDY 190
           IE+RLRDKIPEI+ VEQ +++ET GLELN +N+EK+L+E+RPYL+GTGGG LEL+EI  Y
Sbjct: 139 IESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGY 198

Query: 191 VVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           VVKVRL+GPAAGVMTVRVALTQKLRE IP+I AVQL+E
Sbjct: 199 VVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236

[Close]

BLAST of Carg08387-RA vs. TAIR10
Match: AT5G49940.1 (NIFU-like protein 2)

HSP 1 Score: 237.3 bits (604), Expect = 9.5e-63
Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 0


Query: 7   TRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTRRRHLGN 66
           T  QA+ P+ +++ L   P   +S   L               RFL       R + +  
Sbjct: 14  TPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQLFRRSKVVKA 73

Query: 67  VVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSST 126
           V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSST
Sbjct: 74  VATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSST 133

Query: 127 MTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELI 186
           MT+KMGIE RL +KIPEI+ VE + D ETGLELN +N+EK+L EIRPYL GT  G L+L+
Sbjct: 134 MTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLV 193

Query: 187 EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLI 227
           EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP+IAAVQLI
Sbjct: 194 EIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Carg08387-RA vs. TAIR10
Match: AT4G01940.1 (NFU domain protein 1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-19
Identity = 53/141 (37.59%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 76  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 135
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 136 RDKIPEIL-EVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVR 195
           ++K  + L ++ Q+ D E   ++  + V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 196 LSGPAAGVMTVRVALTQKLRE 216
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Carg08387-RA vs. TAIR10
Match: AT1G51390.1 (NFU domain protein 5)

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 88  VRPSLMADGGNVAL--HEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 147
           +RPS+  DGG++     + +  +V L++QGAC  CPSS++TLK GIE  L   + E+  V
Sbjct: 199 IRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGV 258

Query: 148 EQIIDTE 153
           EQ  D E
Sbjct: 259 EQEFDGE 265

[Close]

BLAST of Carg08387-RA vs. TAIR10
Match: AT3G20970.1 (NFU domain protein 4)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 88  VRPSLMADGGNVALHEID--GLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 147
           +RP++  DGG++     D    +V L++QGAC  CPSS++TLK GIE  L   + E+  V
Sbjct: 204 IRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGV 263

Query: 148 EQIIDTE 153
           EQ  D E
Sbjct: 264 EQEFDGE 270

[Close]

BLAST of Carg08387-RA vs. Swiss-Prot
Match: sp|Q84RQ7|NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.5e-68
Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 71  SCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMG 130
           SCV+PLTEENVE+VLDEVRPSLMADGGNVALHEIDGLVV+LKLQGACGSCPSS+MTLKMG
Sbjct: 79  SCVMPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMG 138

Query: 131 IETRLRDKIPEILEVEQIIDTET-GLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDY 190
           IE+RLRDKIPEI+ VEQ +++ET GLELN +N+EK+L+E+RPYL+GTGGG LEL+EI  Y
Sbjct: 139 IESRLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGY 198

Query: 191 VVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           VVKVRL+GPAAGVMTVRVALTQKLRE IP+I AVQL+E
Sbjct: 199 VVKVRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLLE 236

[Close]

BLAST of Carg08387-RA vs. Swiss-Prot
Match: sp|Q93W20|NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-61
Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 0


Query: 7   TRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTRRRHLGN 66
           T  QA+ P+ +++ L   P   +S   L               RFL       R + +  
Sbjct: 14  TPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQLFRRSKVVKA 73

Query: 67  VVSPSCVL--PLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSST 126
           V +P  +L  PLTEENVE VLDE+RP LM+DGGNVALHEIDG +V +KLQGACGSCPSST
Sbjct: 74  VATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSST 133

Query: 127 MTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELI 186
           MT+KMGIE RL +KIPEI+ VE + D ETGLELN +N+EK+L EIRPYL GT  G L+L+
Sbjct: 134 MTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLV 193

Query: 187 EIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLI 227
           EI+D +VK+R++GPAAGVMTVRVA+TQKLREKIP+IAAVQLI
Sbjct: 194 EIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 235

[Close]

BLAST of Carg08387-RA vs. Swiss-Prot
Match: sp|Q84LK7|NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.7e-51
Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 74  LPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIET 133
           LPLT  NVE VLD+VRP L ADGG+VALHEI G VV LKLQGACGSCPSS +T+K GIE 
Sbjct: 73  LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 132

Query: 134 RLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDYVVKV 193
           RL +KIP++  VE + D ETGLELN +NVEK+L EIRPYLAGTGGG L+ + IK  +VKV
Sbjct: 133 RLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKV 192

Query: 194 RLSGPAAGVMTVRVALTQKLREKIPAIAAVQLI 227
           RL+GPAA V TVR+A+++KLREKIP+I  VQL+
Sbjct: 193 RLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLL 225

[Close]

BLAST of Carg08387-RA vs. Swiss-Prot
Match: sp|Q93W77|NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.8e-18
Identity = 53/141 (37.59%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 76  LTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRL 135
           LT +NV+ VL++VRP L++DGGNV +  ++  VV LKLQGAC SCPSS+ T+ MGIE  L
Sbjct: 85  LTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIERVL 144

Query: 136 RDKIPEIL-EVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVR 195
           ++K  + L ++ Q+ D E   ++  + V   L  +RP +   GG + E++ ++     V+
Sbjct: 145 KEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRPAIKNYGGSV-EVLSVEGEDCVVK 204

Query: 196 LSGPAAGVMTVRVALTQKLRE 216
             GP +  M ++ A+ +K ++
Sbjct: 205 YVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Carg08387-RA vs. Swiss-Prot
Match: sp|P33179|NIFU_ANASL (Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 GN=nifU PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 81  VEKVLD-EVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKI 140
           ++KVLD EVRP L+ADGG+V L+++DG +V + LQGACGSCPSST TLK+ IE+RLRD+I
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 141 PEILEVEQI 149
              L VE +
Sbjct: 104 NPSLVVEAV 112

[Close]

BLAST of Carg08387-RA vs. TrEMBL
Match: tr|A0A0A0LMF5|A0A0A0LMF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060370 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.2e-99
Identity = 197/227 (86.78%), Postives = 203/227 (89.43%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVA FSTRAQ  K TP  ATLYRSPS   S S+LSFFKS         R FL FNSSCTR
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYRSPSHPASPSYLSFFKSSFFRGQFCSRHFLRFNSSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
            RHLGNVVSPSCVLPLTEENVEKVLDEVRP LMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRHLGNVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Carg08387-RA vs. TrEMBL
Match: tr|A0A1S3BRP8|A0A1S3BRP8_CUCME (nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 6.4e-98
Identity = 195/227 (85.90%), Postives = 201/227 (88.55%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSXXXXXXXXXRRFLGFNSSCTR 60
           MVA FSTRAQ  K TP  ATLY S S  TS SHLS FKS         RRFL FN SCTR
Sbjct: 1   MVATFSTRAQPFKSTPIAATLYPSSSHPTSPSHLSLFKSSFFRGQFCSRRFLRFNPSCTR 60

Query: 61  RRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120
            R LGNV+SPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC
Sbjct: 61  IRRLGNVISPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSC 120

Query: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGI 180
           PSSTMTLKMGIETRLRDKIPEILEVEQI+DTETGLELN +NVEK+L+EIRPYLAGTGGGI
Sbjct: 121 PSSTMTLKMGIETRLRDKIPEILEVEQIMDTETGLELNEENVEKVLSEIRPYLAGTGGGI 180

Query: 181 LELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           LE+IEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 181 LEVIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 227

[Close]

BLAST of Carg08387-RA vs. TrEMBL
Match: tr|A0A251QV75|A0A251QV75_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G081800 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84
Identity = 177/246 (71.95%), Postives = 193/246 (78.46%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPT--PTTATLYR----SPSERTSASHLSFFK-------------SXX 60
           MV AFS + Q LKPT  P T  L+     S SE  S SHLS FK             +  
Sbjct: 1   MVGAFSGQTQGLKPTTPPATTALFNPSLSSSSELLSTSHLSLFKNSTSIACGFSSKQASF 60

Query: 61  XXXXXXXRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVAL 120
                  R FLGF+ +  RR+  G+VVSP C+LPLTEENVEKVLDEVRP LMADGGNVAL
Sbjct: 61  LRGQFCSRHFLGFDYNLARRKQAGHVVSPYCILPLTEENVEKVLDEVRPGLMADGGNVAL 120

Query: 121 HEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDN 180
           HEIDGLVV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEI+EVEQI+D ETGLELN +N
Sbjct: 121 HEIDGLVVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEIMEVEQILDRETGLELNEEN 180

Query: 181 VEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIA 228
           VEK+L+EIRPYLAGTGGGILEL++I DYVVKVRLSGPAAGVMTVRVALTQKLREKIP IA
Sbjct: 181 VEKVLSEIRPYLAGTGGGILELVQINDYVVKVRLSGPAAGVMTVRVALTQKLREKIPVIA 240

[Close]

BLAST of Carg08387-RA vs. TrEMBL
Match: tr|A0A2P5F3H4|A0A2P5F3H4_9ROSA (FeS cluster assembly containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_118600 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 3.1e-84
Identity = 178/233 (76.39%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 13  KPTPTTATLYR----SPSERTSASHLSFFK-------------SXXXXXXXXXRRFLGFN 72
           KP PTTA LY     S S+R S SH S FK             S         R  +GFN
Sbjct: 7   KPPPTTAALYNPSPSSSSKRPSPSHFSLFKNPISDTSGFSSKQSCFLRGQFCSRLLIGFN 66

Query: 73  SS-CTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQ 132
           S+   RRRH G VVSPSCVLPLTEENVEKVLDEVRP LMADGGNVALHEIDGLVV+LKLQ
Sbjct: 67  SNHARRRRHSGFVVSPSCVLPLTEENVEKVLDEVRPGLMADGGNVALHEIDGLVVVLKLQ 126

Query: 133 GACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLA 192
           GACGSCPSSTMTLKMGIETRLRDKIPEI+ VEQI+DTETGLELN DNVEK+LAEIRPYLA
Sbjct: 127 GACGSCPSSTMTLKMGIETRLRDKIPEIMAVEQILDTETGLELNEDNVEKVLAEIRPYLA 186

Query: 193 GTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           GTGGGILEL++I  YVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
Sbjct: 187 GTGGGILELVQIDGYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 239

[Close]

BLAST of Carg08387-RA vs. TrEMBL
Match: tr|A0A2P6QSY9|A0A2P6QSY9_ROSCH (Putative NIF system FeS cluster assembly, NifU OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0400851 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.5e-83
Identity = 175/240 (72.92%), Postives = 188/240 (78.33%), Query Frame = 0


Query: 1   MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFK-------------SXXXXXXXX 60
           MV AFS      K T TT  L+   SERTS SH S  K             +        
Sbjct: 1   MVGAFSP-----KTTQTTTALFNPSSERTSTSHFSLSKNSVVDASGFSSNQTCFLRGQFC 60

Query: 61  XRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGL 120
            R F+GF     RR+  G+VVSP+CVLPLTEENVE+VLDEVRP LMADGGNVALHEIDGL
Sbjct: 61  SRHFVGFYCKPARRKQPGHVVSPNCVLPLTEENVERVLDEVRPGLMADGGNVALHEIDGL 120

Query: 121 VVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLA 180
           VV+LKLQGACGSCPSSTMTLKMGIETRLRDKIPEI+EVEQI+DTETGLELN +NVE LLA
Sbjct: 121 VVVLKLQGACGSCPSSTMTLKMGIETRLRDKIPEIMEVEQILDTETGLELNEENVEMLLA 180

Query: 181 EIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE 228
           EIRPYLAGTGGGILEL+EIKDY+VKVRLSGPAAGVMTVRVALTQKLREKIP IAAVQLIE
Sbjct: 181 EIRPYLAGTGGGILELLEIKDYIVKVRLSGPAAGVMTVRVALTQKLREKIPVIAAVQLIE 235

The following BLAST results are available for this feature:

BLAST of Carg08387-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929559.1	4.1e-112	96.04	nifU-like protein 3, chloroplastic [Cucurbita moschata]	[more]
XP_022997561.1	2.0e-111	95.59	nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like ...	[more]
XP_004148324.1	1.8e-99	86.78	PREDICTED: nifU-like protein 3, chloroplastic [Cucumis sativus] >KGN61156.1 hypo...	[more]
XP_008451517.1	9.7e-98	85.90	PREDICTED: nifU-like protein 3, chloroplastic [Cucumis melo]	[more]
XP_022153286.1	3.7e-89	77.05	nifU-like protein 3, chloroplastic isoform X2 [Momordica charantia]	[more]

BLAST of Carg08387-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25910.1	3.0e-69	82.28	NFU domain protein 3	[more]
AT5G49940.1	9.5e-63	58.56	NIFU-like protein 2	[more]
AT4G01940.1	3.8e-19	37.59	NFU domain protein 1	[more]
AT1G51390.1	2.3e-08	43.28	NFU domain protein 5	[more]
AT3G20970.1	3.9e-08	43.28	NFU domain protein 4	[more]

BLAST of Carg08387-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84RQ7\|NIFU3_ARATH	5.5e-68	82.28	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2...	[more]
sp\|Q93W20\|NIFU2_ARATH	1.7e-61	58.56	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1...	[more]
sp\|Q84LK7\|NIFU1_ORYSJ	4.7e-51	68.63	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=N...	[more]
sp\|Q93W77\|NIFU1_ARATH	6.8e-18	37.59	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1...	[more]
sp\|P33179\|NIFU_ANASL	1.1e-15	62.32	Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 ...	[more]

BLAST of Carg08387-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LMF5\|A0A0A0LMF5_CUCSA	1.2e-99	86.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060370 PE=4 SV=1	[more]
tr\|A0A1S3BRP8\|A0A1S3BRP8_CUCME	6.4e-98	85.90	nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=4 ...	[more]
tr\|A0A251QV75\|A0A251QV75_PRUPE	1.8e-84	71.95	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G081800 PE=4 SV=1	[more]
tr\|A0A2P5F3H4\|A0A2P5F3H4_9ROSA	3.1e-84	76.39	FeS cluster assembly containing protein OS=Trema orientalis OX=63057 GN=TorRG33x...	[more]
tr\|A0A2P6QSY9\|A0A2P6QSY9_ROSCH	1.5e-83	72.92	Putative NIF system FeS cluster assembly, NifU OS=Rosa chinensis OX=74649 GN=Rch...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0016226	iron-sulfur cluster assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0051536	iron-sulfur cluster binding
GO:0005506	iron ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001075	NIF_FeS_clus_asmbl_NifU_C
IPR034904	FSCA_dom_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08387	Carg08387	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08387-RA	Carg08387-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08387-RA.three_prime_UTR.1	Carg08387-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08387-RA.CDS.4	Carg08387-RA.CDS.4	CDS
Carg08387-RA.CDS.3	Carg08387-RA.CDS.3	CDS
Carg08387-RA.CDS.2	Carg08387-RA.CDS.2	CDS
Carg08387-RA.CDS.1	Carg08387-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08387-RA.five_prime_UTR.1	Carg08387-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08387-RA.exon.4	Carg08387-RA.exon.4	exon
Carg08387-RA.exon.3	Carg08387-RA.exon.3	exon
Carg08387-RA.exon.2	Carg08387-RA.exon.2	exon
Carg08387-RA.exon.1	Carg08387-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	G3DSA:3.30.300.130		coord: 73..154 e-value: 1.9E-33 score: 116.1
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	G3DSA:3.30.300.130		coord: 155..227 e-value: 9.4E-27 score: 94.7
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 156..226
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 78..152
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 81..146 e-value: 2.2E-26 score: 91.7 coord: 162..224 e-value: 7.0E-12 score: 45.2
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PRODOM	PD002830		coord: 166..226 e-value: 4.0E-15 score: 198.0 coord: 85..147 e-value: 5.0E-29 score: 317.0
None	No IPR available	PANTHER	PTHR11178:SF25	NIFU-LIKE PROTEIN 3, CHLOROPLASTIC	coord: 19..226
None	No IPR available	PANTHER	PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	coord: 19..226