Carg08387 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCCAATTTCCATCCACAAAATTTGGCCACACCAATGACGATCTTCATCTTTATCACCCAATCACTGTGTTTCCCTTCTGCAAAATTCATAACCCAAACACAATGCCCTAACTCAGCACCGCATCCCACTGTTTATGAGTCTTCATAGCTCGCATTCCAATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGGTTGGTTTCTTGATTCTGTTTTTGATCTTCTGCAATTCCCTTGTTTTGTTTGTGCAAGTTTTTATTAGGCAACTGATTGGGCGGTATTGTTTGAATCAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGTAGCATTTCTGGATTTTGCTTTTACGATGATCCATAACGAATATGAAAATTTGGCTATTCTTGGAGTGATGGGATGATAGATTCAAGATCATGTAACAGTGTTGGATGCCATTTCTCTTCCAAATTCCAATTTCCTGCTTCTTTTCTCTACTAAATGCTTATAACTGAAACCATTAGGTTTGTAACATTCTGATTGAACTTATCCGGTATCTGTGAGATCCTACGTTGGTTGGGGAGGAGAATGAAAAATTCTTTATAAGGGCATGGAAACCTCCCCTAGCAGACGCATTTTAAATGCTAGAGAAACCCAAAAGAGAAAACCTAAAGAGGACAATATCTACTAGCGTTGGGCTTGAGCCGTTACAAATGGTATCAGAGCCAGAAACTGGGCGATTTTTTAGTGAGGAGGTGTGCCAGCAATGACGCTAGGCTTCGAAGGGGGGTGGATTGGGGAGTCTCATATCAATTGGAGAAGGGAACGAGTGCCAGCGAGAACGCTGGACCCCGAAGGGGGGTGGATTATGAGATCCCACATCAGTTGAGTTGGAGAACGAAGCATTCTTTATGAGGGTGTGGAAACCTCCCCTAGCATAGCAGACACGTTTGAAAAGCCATGAGGAGAAAGAGAAAATCCAAAGAGGACAATATCGGCTAGCGGTGGACTTAGGACGTTACAAATAGATGTGTCAGCGAGGAGGCTGAGCCCTGAAGGGGGTGGACACAAGGTGGTGTGCCAGCAAGAACACTAGGCTCCGAAGGGAGATAGATCGGGGGGTCCCACATCGATTGGAGAAGGGAACAAGTGCCAGTGAGGACGCTAGACCCCGAAGGGGGTGGATAGTGAGATCCCACATCGGATGGGGGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACCTCCCCTAGCAGACGGCGTTTTAAATGCCTTGAGGAGAAACCCGTTCATCCTAGTTCATAGTCTCTAGTCATCCAGTTACTATAGTAAGTAAGAAACTATTAAGAACAAACTAGTAACTAAAACTAATTAACAAATTTTGACTGGAATTTGATGGGTTTTGGTGTTGGTAAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGGTCAGATTCTCTGTTCAATTTTCTGCTATGTTACGAATTTAATAACACTTGCATAGATGATCATAGAATTTCTTTGCAACAACTTAGCTGATACACGAAGCATGCTAATTTGGTTTGTTATGAGTTCTACCTTTTTTATATGTTTAGATACTGCTCATTATATCTTCTTTGGGCCTTTCTTTCTAGACTTCCTTTCAAGATTTTAAAACGCGTCTATTAGGGAAAGGTTTCCACACAAACAATGTTTCGTTCTCCTCTCCATCCAACCGACGTAGGAATTCACAATCCACCCTCCTTGGAGACTTAGCATCATTGCTAGCACAAAACCCAGGCACTGATACCATTTGTAATGGCTCAAGCCCACCGTTAATAAATATTGTCCTCTTTAGGCTTTCTCTTTTGGACTTCCCCTCATAAAGAATGTTCCACACCCTCATAAACAATGTTTCGTTCTCCTCTTCAACTGACGTGGGATTTCACAAATCCACCCATTTGAGGCCCAGCGTTCTCGCTGATACTCGTTTTTCTCTCTAATCGATGTGGGATCTCACGCATTATTATATATATATATATATATGATCGACTAAAAAGATTAGAGGTTTGAAAGTCAGGTATGTTTTTCAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAGAACCAGCTTTGATTCATACACGCTCACCTCATTTTCTCTTTTCATTTCATTATTTTC TCCCAATTTCCATCCACAAAATTTGGCCACACCAATGACGATCTTCATCTTTATCACCCAATCACTGTGTTTCCCTTCTGCAAAATTCATAACCCAAACACAATGCCCTAACTCAGCACCGCATCCCACTGTTTATGAGTCTTCATAGCTCGCATTCCAATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAGAACCAGCTTTGATTCATACACGCTCACCTCATTTTCTCTTTTCATTTCATTATTTTC ATGGTAGCCGCTTTCTCAACTCGAGCTCAAGCTCTTAAACCAACTCCAACCACTGCAACTCTGTATCGGTCACCGTCTGAGCGAACTTCGGCTTCCCATTTGTCATTCTTCAAGAGTTCGTTCTTTAGAGGTCAATTTTGTCGCCGGCGCTTTCTTGGATTCAACTCAAGTTGTACTCGGAGGCGTCATTTAGGAAACGTGGTGTCACCCAGTTGTGTTCTTCCATTGACTGAGGAAAATGTGGAGAAAGTGTTGGACGAAGTAAGGCCAAGCCTGATGGCTGATGGAGGGAATGTTGCTTTGCATGAGATAGATGGGCTTGTTGTGATATTGAAGCTTCAAGGAGCATGTGGCTCTTGCCCAAGCTCAACCATGACACTCAAAATGGGAATCGAGACCAGACTCAGAGACAAAATTCCTGAAATTTTGGAAGTTGAGCAGATCATAGACACTGAAACAGGACTTGAACTCAACCACGACAATGTTGAAAAGTTACTTGCAGAGATTAGGCCATACTTGGCTGGGACAGGGGGTGGAATTCTGGAGCTGATAGAGATAAAAGATTACGTTGTTAAAGTGCGGCTGAGTGGACCAGCAGCTGGAGTTATGACAGTTCGAGTTGCTCTCACACAGAAGTTGAGGGAGAAAATACCAGCCATTGCAGCTGTGCAGCTTATAGAATAG MVAAFSTRAQALKPTPTTATLYRSPSERTSASHLSFFKSSFFRGQFCRRRFLGFNSSCTRRRHLGNVVSPSCVLPLTEENVEKVLDEVRPSLMADGGNVALHEIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEVEQIIDTETGLELNHDNVEKLLAEIRPYLAGTGGGILELIEIKDYVVKVRLSGPAAGVMTVRVALTQKLREKIPAIAAVQLIE
BLAST of Carg08387 vs. NCBI nr
Match: XP_022929559.1 (nifU-like protein 3, chloroplastic [Cucurbita moschata]) HSP 1 Score: 413.7 bits (1062), Expect = 4.1e-112 Identity = 218/227 (96.04%), Postives = 218/227 (96.04%), Query Frame = 0
BLAST of Carg08387 vs. NCBI nr
Match: XP_022997561.1 (nifU-like protein 3, chloroplastic [Cucurbita maxima] >XP_023545672.1 nifU-like protein 3, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 411.4 bits (1056), Expect = 2.0e-111 Identity = 217/227 (95.59%), Postives = 217/227 (95.59%), Query Frame = 0
BLAST of Carg08387 vs. NCBI nr
Match: XP_004148324.1 (PREDICTED: nifU-like protein 3, chloroplastic [Cucumis sativus] >KGN61156.1 hypothetical protein Csa_2G060370 [Cucumis sativus]) HSP 1 Score: 371.7 bits (953), Expect = 1.8e-99 Identity = 197/227 (86.78%), Postives = 203/227 (89.43%), Query Frame = 0
BLAST of Carg08387 vs. NCBI nr
Match: XP_008451517.1 (PREDICTED: nifU-like protein 3, chloroplastic [Cucumis melo]) HSP 1 Score: 365.9 bits (938), Expect = 9.7e-98 Identity = 195/227 (85.90%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of Carg08387 vs. NCBI nr
Match: XP_022153286.1 (nifU-like protein 3, chloroplastic isoform X2 [Momordica charantia]) HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89 Identity = 188/244 (77.05%), Postives = 198/244 (81.15%), Query Frame = 0
BLAST of Carg08387 vs. TAIR10
Match: AT4G25910.1 (NFU domain protein 3) HSP 1 Score: 258.8 bits (660), Expect = 3.0e-69 Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 0
BLAST of Carg08387 vs. TAIR10
Match: AT5G49940.1 (NIFU-like protein 2) HSP 1 Score: 237.3 bits (604), Expect = 9.5e-63 Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 0
BLAST of Carg08387 vs. TAIR10
Match: AT4G01940.1 (NFU domain protein 1) HSP 1 Score: 92.4 bits (228), Expect = 3.8e-19 Identity = 53/141 (37.59%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg08387 vs. TAIR10
Match: AT1G51390.1 (NFU domain protein 5) HSP 1 Score: 56.6 bits (135), Expect = 2.3e-08 Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0
BLAST of Carg08387 vs. TAIR10
Match: AT3G20970.1 (NFU domain protein 4) HSP 1 Score: 55.8 bits (133), Expect = 3.9e-08 Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 0
BLAST of Carg08387 vs. Swiss-Prot
Match: sp|Q84RQ7|NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 5.5e-68 Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 0
BLAST of Carg08387 vs. Swiss-Prot
Match: sp|Q93W20|NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 1.7e-61 Identity = 130/222 (58.56%), Postives = 160/222 (72.07%), Query Frame = 0
BLAST of Carg08387 vs. Swiss-Prot
Match: sp|Q84LK7|NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 4.7e-51 Identity = 105/153 (68.63%), Postives = 125/153 (81.70%), Query Frame = 0
BLAST of Carg08387 vs. Swiss-Prot
Match: sp|Q93W77|NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.8e-18 Identity = 53/141 (37.59%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg08387 vs. Swiss-Prot
Match: sp|P33179|NIFU_ANASL (Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain L31) OX=29412 GN=nifU PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15 Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 0
BLAST of Carg08387 vs. TrEMBL
Match: tr|A0A0A0LMF5|A0A0A0LMF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060370 PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 1.2e-99 Identity = 197/227 (86.78%), Postives = 203/227 (89.43%), Query Frame = 0
BLAST of Carg08387 vs. TrEMBL
Match: tr|A0A1S3BRP8|A0A1S3BRP8_CUCME (nifU-like protein 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492775 PE=4 SV=1) HSP 1 Score: 365.9 bits (938), Expect = 6.4e-98 Identity = 195/227 (85.90%), Postives = 201/227 (88.55%), Query Frame = 0
BLAST of Carg08387 vs. TrEMBL
Match: tr|A0A251QV75|A0A251QV75_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G081800 PE=4 SV=1) HSP 1 Score: 321.2 bits (822), Expect = 1.8e-84 Identity = 177/246 (71.95%), Postives = 193/246 (78.46%), Query Frame = 0
BLAST of Carg08387 vs. TrEMBL
Match: tr|A0A2P5F3H4|A0A2P5F3H4_9ROSA (FeS cluster assembly containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_118600 PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 3.1e-84 Identity = 178/233 (76.39%), Postives = 187/233 (80.26%), Query Frame = 0
BLAST of Carg08387 vs. TrEMBL
Match: tr|A0A2P6QSY9|A0A2P6QSY9_ROSCH (Putative NIF system FeS cluster assembly, NifU OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0400851 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 1.5e-83 Identity = 175/240 (72.92%), Postives = 188/240 (78.33%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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