Carg07287-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAGGCTCTATATCTTAACTGCCCACAACTAGAGGATCTCAATCTGAACTCTTGCAAAAATTTGCATCCAGGTGAGTTTTTTTATTCTTCTCTTACCTCTTAACTGATGATCTCCTTGAAACTGACTATAATCCATATATCAGATGGCAAGTTTTTCTCCTAATAATATTGGATATATATGTCTGCTCGCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGAACTGTGCACGCATCAGATTGCAAGGAGTTAGTAGTTGGAGCTATTCGAATTCAGGTACACAAATTGATTACTTGACTTTAATCTCCTACTGAATTTGAGGATTGGTTACCTGGAAAGTGGCGACAATCCATGTACATGGTAGATGGCTCAACGAAGAATCAGCACTCTGATGTGATTATGCATCTCTTTTGTCAATTTCAGCTTGATAAGGCTGCTGCACCTGAGGAGAACCTACTATCATGCAAGCGCTTGGCAGATGGCTCAAAACGTATTCGAGTTCCACCTCTTATTAATTCACAGGCAAGTCAGAACTACTCGTTATATCCATATAGTGCTCTGAACATAAACATGGTTGTTAAGAACATATTGCCCAAGAGCGAGCTTAAACTTGTGAGCTTAATGGTAACTAACAAGTTTAGGAGTATTTTAACACGGAATCGGAATAAAAAAAAGTCCAATACTCAATTTCATGTAGTATAATTTCTTTCTCAATTGTTCAATTCACATATTTGGCTTCATGAATCCAATTAATATCCTAATCTACACAATGATGCATACACAAACTTCATGTAGTAGTAAATAACAGTGATCTTGTTCTTGTTGGCAGTCATCGGATAATTATACGAAACGAAGAAGGGTAGGAAGCCATCAGTGTAACATTCTTATGTCTTAAACAGTTCAGAAGTTCATAATGTTTTTCTTCTTGGCACACTGATAGTAATTGTGCGTTGTGTATTAGAGCCAATGAAGGCAGAGTGCAGCTGCCATCCATTTGGGGTTATAGGCAGAGCACCTCGCCAGTGTAAACATTTTTATTTGTAACACTTCCACACTTCCTAAAACTATATTTTTCAGTATGGAACTGAGTCCAGTACCCAGAGCCAAGCCATACATGGAAAGCTTATTAGGGTTTATAAGTTCTTTTTCTTTCCCCCCAATAAAGAACGATAGTTATTTATGATTAATTATTATTTGAGCACTACTTGATTGACTCCACTTGGTTGTAAGTTCATGTTCTGGAAGATGAGATTCGGAGTTCAGGGCAGGACTTGGAGGATTTATTATTCAAGGTCACCTACACTAGGTCGTGGTGGTGGCCCTCCAAATTCTTGGATGCTCGGTCAAACGGTATAAAACTATTAGCCACATTGGTTCGGTCTCAATTAAGAAGCTAGTTCCTTTGACTCGAGACAGCTCTCTTTTGCCTAAGTATTATAGGGAAAATCTCGACCTAATCTACAAGGCTAAATAGGTACGTCAAATCTCAGCTATGTTCAATTTTATGCTTCATTAAATTTGATTCTTGATTTTTTGATATCATCGTCTTCCTTCACTTGCTATCGATTGATGAAGGTGGGTTTGAAGAATTTCACTTCAATCAAAACTAACGCAAAATTGAAAAATATCACACGTGGAAAGACACCCAAAAGACAGGCACACGCAATACACATTAATCGATCACGAACACACAGTCACAATCCACATGTGGCAGAGAGACAAAGAAACACATCAAATTAAAAGTTTGATTAACACCCAAAGTTCGAACTTTTTTCTTTCCTTTTCTTTTTAAATACTTAAAAGCGTTTTTTTAACACAATTTTAAAGCTTAGCTAGCCATTGCATTATTAGCACAAAAAAAGACATTTTCAATAAATAACATAAACAGCAAACCCAAAACATGAATGGGTCATCCACATAAATGCCTTCTTCAACCATCCACATGACCTTGTTCCCTATGCTCAACCATCCATATGGAACATTTCCATTTAATTATTGGCCCTCTCCTCTATATA ATGCAGGCTCTATATCTTAACTGCCCACAACTAGAGGATCTCAATCTGAACTCTTGCAAAAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGAACTGTGCACGCATCAGATTGCAAGGAGTTAGTAGTTGGAGCTATTCGAATTCAGCTTGATAAGGCTGCTGCACCTGAGGAGAACCTACTATCATGCAAGCGCTTGGCAGATGGCTCAAAACGTATTCGAGTTCCACCTCTTATTAATTCACAGGCAAGTCAGAACTACTCGTTATATCCATATAGTGCTCTGAACATAAACATGGTTGTTAAGAACATATTGCCCAAGAGCGAGCTTAAACTTGTGAGCTTAATGTCATCGGATAATTATACGAAACGAAGAAGGGTAGGAAGCCATCAGTGTAACATTCTTATGTCTTAAACAGTTCAGAAGTTCATAATGTTTTTCTTCTTGGCACACTGATAGTAATTGTGCGTTGTGTATTAGAGCCAATGAAGGCAGAGTGCAGCTGCCATCCATTTGGGGTTATAGGCAGAGCACCTCGCCAGTGTAAACATTTTTATTTGTAACACTTCCACACTTCCTAAAACTATATTTTTCAGTATGGAACTGAGTCCAGTACCCAGAGCCAAGCCATACATGGAAAGCTTATTAGGGTTTATAAGTTCTTTTTCTTTCCCCCCAATAAAGAACGATAGTTATTTATGATTAATTATTATTTGAGCACTACTTGATTGACTCCACTTGGTTGTAAGTTCATGTTCTGGAAGATGAGATTCGGAGTTCAGGGCAGGACTTGGAGGATTTATTATTCAAGGTCACCTACACTAGGTCGTGGTGGTGGCCCTCCAAATTCTTGGATGCTCGGTCAAACGGTATAAAACTATTAGCCACATTGGTTCGGTCTCAATTAAGAAGCTAGTTCCTTTGACTCGAGACAGCTCTCTTTTGCCTAAGTATTATAGGGAAAATCTCGACCTAATCTACAAGGCTAAATAGGTACGTCAAATCTCAGCTATGTTCAATTTTATGCTTCATTAAATTTGATTCTTGATTTTTTGATATCATCGTCTTCCTTCACTTGCTATCGATTGATGAAGGTGGGTTTGAAGAATTTCACTTCAATCAAAACTAACGCAAAATTGAAAAATATCACACGTGGAAAGACACCCAAAAGACAGGCACACGCAATACACATTAATCGATCACGAACACACAGTCACAATCCACATGTGGCAGAGAGACAAAGAAACACATCAAATTAAAAGTTTGATTAACACCCAAAGTTCGAACTTTTTTCTTTCCTTTTCTTTTTAAATACTTAAAAGCGTTTTTTTAACACAATTTTAAAGCTTAGCTAGCCATTGCATTATTAGCACAAAAAAAGACATTTTCAATAAATAACATAAACAGCAAACCCAAAACATGAATGGGTCATCCACATAAATGCCTTCTTCAACCATCCACATGACCTTGTTCCCTATGCTCAACCATCCATATGGAACATTTCCATTTAATTATTGGCCCTCTCCTCTATATA ATGCAGGCTCTATATCTTAACTGCCCACAACTAGAGGATCTCAATCTGAACTCTTGCAAAAATTTGCATCCAGAGAGATTGTTACTTCAGTGCCCCAGTTTACGAACTGTGCACGCATCAGATTGCAAGGAGTTAGTAGTTGGAGCTATTCGAATTCAGCTTGATAAGGCTGCTGCACCTGAGGAGAACCTACTATCATGCAAGCGCTTGGCAGATGGCTCAAAACGTATTCGAGTTCCACCTCTTATTAATTCACAGGCAAGTCAGAACTACTCGTTATATCCATATAGTGCTCTGAACATAAACATGGTTGTTAAGAACATATTGCCCAAGAGCGAGCTTAAACTTGTGAGCTTAATGTCATCGGATAATTATACGAAACGAAGAAGGGTAGGAAGCCATCAGTGTAACATTCTTATGTCTTAA MQALYLNCPQLEDLNLNSCKNLHPERLLLQCPSLRTVHASDCKELVVGAIRIQLDKAAAPEENLLSCKRLADGSKRIRVPPLINSQASQNYSLYPYSALNINMVVKNILPKSELKLVSLMSSDNYTKRRRVGSHQCNILMS
BLAST of Carg07287-RA vs. NCBI nr
Match: XP_022954395.1 (F-box/LRR-repeat protein 17-like [Cucurbita moschata]) HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32 Identity = 104/141 (73.76%), Postives = 105/141 (74.47%), Query Frame = 0
BLAST of Carg07287-RA vs. NCBI nr
Match: XP_023548623.1 (F-box/LRR-repeat protein 17-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 148.3 bits (373), Expect = 2.0e-32 Identity = 104/141 (73.76%), Postives = 105/141 (74.47%), Query Frame = 0
BLAST of Carg07287-RA vs. NCBI nr
Match: XP_022991271.1 (F-box/LRR-repeat protein 17-like [Cucurbita maxima]) HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31 Identity = 102/141 (72.34%), Postives = 104/141 (73.76%), Query Frame = 0
BLAST of Carg07287-RA vs. NCBI nr
Match: XP_004146955.2 (PREDICTED: F-box/LRR-repeat protein 17 [Cucumis sativus] >KGN44762.1 hypothetical protein Csa_7G378510 [Cucumis sativus]) HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29 Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg07287-RA vs. NCBI nr
Match: XP_008451271.1 (PREDICTED: F-box/LRR-repeat protein 17 isoform X2 [Cucumis melo]) HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29 Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg07287-RA vs. TAIR10
Match: AT3G54650.1 (RNI-like superfamily protein) HSP 1 Score: 65.1 bits (157), Expect = 4.0e-11 Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 0
BLAST of Carg07287-RA vs. Swiss-Prot
Match: sp|Q8W104|FBL17_ARATH (F-box/LRR-repeat protein 17 OS=Arabidopsis thaliana OX=3702 GN=FBL17 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 7.2e-10 Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 0
BLAST of Carg07287-RA vs. TrEMBL
Match: tr|A0A1S4DYH7|A0A1S4DYH7_CUCME (F-box/LRR-repeat protein 17 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492620 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.0e-30 Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg07287-RA vs. TrEMBL
Match: tr|A0A1S3BR56|A0A1S3BR56_CUCME (F-box/LRR-repeat protein 17 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492620 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.0e-30 Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg07287-RA vs. TrEMBL
Match: tr|A0A0A0K8R2|A0A0A0K8R2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G378510 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 8.0e-30 Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 0
BLAST of Carg07287-RA vs. TrEMBL
Match: tr|A0A2P4HLI4|A0A2P4HLI4_QUESU (F-box/lrr-repeat protein 17 OS=Quercus suber OX=58331 GN=CFP56_02125 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16 Identity = 54/141 (38.30%), Postives = 67/141 (47.52%), Query Frame = 0
BLAST of Carg07287-RA vs. TrEMBL
Match: tr|A0A2N9I407|A0A2N9I407_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48669 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 9.4e-15 Identity = 63/87 (72.41%), Postives = 71/87 (81.61%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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