Carg07242-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07242-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Non-structural 2
Location	Cucurbita_argyrosperma_scaffold_017 : 864400 .. 868428 (-)
Sequence length	1147

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCGCCGGAATGGAGGGAGAAGGTACCTCAGAGATGGAGTATACGGAGATTGAATCCTCCGCCGATTACTTCGACAGCTCCATACTGTTCAATATCATCAACGATGTCTCCGCCTTCGTCTTGTACATGCACCAACAAGTCCCTTCGTAAGTTACTCCTTCCAATTCCAACGTATTTTCCGTTTGTTAACTTCGAAACTGCTGGAAACGGGGGAAAAATCCATTCAGGTACGATTCCCGATGGATAATGTGTGATCGATGTTACGTTCAGTTCAAGCTTGGCGCTTATGACTATGATCGATACTTTTGGTTTGTTAAGTTTTGAGTCGATTGTAGTTGCTGTCTGATTTATGCACATGGTTGGACTTGATTACCTCAGTCACTCTATTTGAAATTGTGCCTTGTGAGTTTGGGGGAGGAAAATTAAGGATTCTAGGAGCAATGAGATTTGTTCGATTCGAAATTTACTGAGGCTTTCGCTCTGTAAGATTTGGGAAATTTAAATGCTCATTTTTGATATGTTGAAATTTTCAACCGGTATCTATTCTAAATGTCATATAATATTAGTGATTCGTTTTAGGATCTGTAAATTGCTGAGATGATCGTTTAAAAATGTGTTTCGGATGGAATCGTGAATAGAAAAATGCTAACGTGTCCTTCAGGTCGAGGTTCAAATCTCGGTGCCCCAAAGATGATGAATAGAAGAATGAATGTTGTCGGCTAACAGAACATTTATTTTGCCTAACATTGCTTATTTTGTTCTTCTTTATATCTGTTTTGTGTCTCTTCTATGATTTTTGCATGTGTCGTATGGCCTGTAATGCAATGTTTTTTGATTGTTTCTTTCCTAGTATTACAAAAAGCCCTTGCAAGAACACCTTTATAAAGTAAATATTGCGGATGATATGTTCTTGAGAAAGAACTCTTGGAGAAAGCTTTAAAAGAATTAAAATATTTTCTTTTGTATTGAAAATACTGTGTCAGTGACTTTATATAGAGGCCAACTGTTAATTACAAGACTGATTAGTTCAAGCATAAGTAACTACAACAACAAACCAGATGAACAGAAGCTAAATAACTAAACAGAAACAGACCAACGGAACAGAATATAATCGCTACTAATGATTCTCCTCAACAGTGGAGAAAAGGGCAAACCATTAAAGAAACGAACATACGTAGCTTTTGTTATTTTGAGACTGAAAATCAGTATGCGAGAACACCTTTTAGTCTTTGAAATAAAATGTAATCTACATTTTAAATGTACATGTACACAGAGTTAAAAACTAATCTTTTCAGTTTCAGTAGACATTGGTTTTCTGGTTCAATCTTCGGTAGATCACTTATATCTAGGAAGCCAAAAGTTCATAAATTTTATACATCCCCTACTCTGGCTCCTCCATTTTGCTATAAACTAGAATTATATGATTTACAAGGATTTAACATTGTATGAGATATATATTTGGTATGCTTGTACCATAAGCACTGATGTCTGGTGGCTTATGTGCAGAATCCTACAGGACATGAGCATTGAATTTGACACTTTGCATGAAGAATACAAAGAGCTGGTATGTTAGCTGAGAAAGGGTAGTTTCCTTTACACTTTTTTGCATCAATCTGAGGATCATAAGAACGGTTATTTTTAGGGAAGTGAATTGGCACAGAATGAACTAAAAGCATCGTCACGAAGAAAGCATACTGGCAGAATGAGGGAGGTCAGACAGGGAATTAAGAGAATGGAGAAGTTAATGAATTCAGTCTCTGGGTTTCAAGCTGCCATCAAATCGTTGATTAGTGAGACTCCTAACGTCCAGGAAGTATTATTAATTCTTGGAGCAACCCCACTGCGGCCGCAATATGTTTATGAACTGTGCTTTTCACATAAAAATGTTGTGGTAAGAGGTGCAGATTACTTCGTCAAGCACAAAGCAGCAGAAGTTCTTTCAAGAAAGGTGCGTTTGAATTGTAGTACTTTTCCTAAATTTTTTCAGCATTTGATTCAAATTTTGTTGTTCATAGCAGGCTATTCGAACATTAATCTCAAAGGATGCTGGGTCTGCCTCGTATCCAGGTACACAGTCGTGCACGTTAAAGCAAATTGATCAAGTTGGGAGAAGAATTCTCATCCTTGAAATTTTCTCATTAAGAAATGATGACATATTCTTCTAGGCCCTACTAAGTTGTTTCTATTGGTGAAGGCCCCTTCCTCTATCAATCTGCCCTTGCACTTCATTCCAAAACGTGAATTCCGGTATAGCAAAAAGGTAACCGTTGGACGTTTTTGCTTTTATTTTCATATGAGGATACTAATGAGATCATCTTGGAGGTTCTGTGATCTATCTCTCTTTTATTGAAGAGTGCATTATCTTGTTTCCGGTTAAATCAATTATTAATTGTAAAGAGAATCTTCTTCATGTCAGTTAGCTGAGGGACTGGAATGCCAACCAGTTTTCTGACAAAATAATATAGTATGTCCATTTATGACAAAAAACAGTTATTTTCCAACTGCCTACAGTATCCTGAATCTCCCAATCATATTAGATTATCTAGTTCCATGAGAATTCGACTGTTTTAGTATAATATACTACATCACTTTTCATTTATCAATATCATTTGGTATTAGATCTTTCAGTTTGATCCAAATGCATAATCTGAGGTTATAAGAGGATGTTGATCATCTTGATTGTCCAGACTATGAAGCACCATTGCGTGCATCTTTCTTGGTGCATTGGAATCTGTTAATCAATTTGATATCGTATAAAACAAAGATCTTTGATGCAGATAAAGCCCTTCAAATTACGATTTAAATGCAAAGGCCAAATCCACCAGATGAATGATCCTGGTCCTGATCGTGAATTTCAAGTTGGAAACTCTGATGACTTGGCCAACTCTTCAGTAGAAGATTCAATCTGGTATGGAATGTTTAATATTCAGTTATTATTATGGAATTGTGTTTGGTAATGGGGTCAAAGTCCAACCTTGGCTGGATAAAAGAAAAGATCATAGATAAGTGAAGGACATCCTCTGTGAGATCTCTCATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGGGTGTAGAAACCTCTCTCTAGTAGACGCGTTTTAAAAACCTTGAGAGAAAGCGTAAAGAGGATAATATCTGTTAGTGGTGGGCTTGGGCCGTTACATTCTCTCTATTGATATGAAGTCTCTTGAGTGCAATCAAAAACAAAAATACGAGAATTTATACTCTAAAGTAGACAATATGGCACTATTGTGGAGATAAATGAAAAAAGAGTTTGTTGTCTGTAATAAATTTCCATTCATTGTTTAAGAAAAATGATTGGTTAAGTACATTAGTATTGACATTTAATACGTCAAGTTAGGTATTAAAATGGTGCGTTATCCGTGAGGGATTAGCTTTGCAGACATCAATAAAAGGAGGGTGCTATTGTTAAGAAATAAAGTTAGTTTAAGAGCAATATAATCTCATAGACATATCAAGTCATTGGATGACATTTTTAGTTTTAAGAACCATGCTCATTAACTAATATTTTTCTTTAGAAGGCATTAGAGATCATTAAACTAAAAAAAAAAAAAAAAAAAGCATGTTTTGGTGAAAGTATGTGCCAAATTAAGAGCTTTAGTCCTTTTATGCAACAATATCAATACTTCATTCATAATTCCAGGTTTCAATGTCGACATACAATCAAGGGGATAGCATTCAACAGACCTGATGAAGATTGAAAGTGTCGACTGACAAAGTTAAGTAAACACTAACCTGTAAACTTGCAAATGAATTGCTTCTAATTGTATTTTGTAGGCCAAAAATCCTTGACCCTCGAGATTTTAGCTTTCGATATGCAGCAGGTGATCTGGACTTGGATTTACATCCTTTTAGCTATAATTTCAATGGTGGCGATTTAAGTAAACTTCTATATTGTCCTTCAGCTATTAAAATGGTGAATCTTGGTTAAGTCTTCTTACTACCAAAGATGCTAAGCTTTGTAATCTCAAACCGTGCTTTGTCTAACTTGG

mRNA sequence

TCTCTCTCTCTCTCTCGCCGGAATGGAGGGAGAAGGTACCTCAGAGATGGAGTATACGGAGATTGAATCCTCCGCCGATTACTTCGACAGCTCCATACTGTTCAATATCATCAACGATGTCTCCGCCTTCGTCTTGTACATGCACCAACAAGTCCCTTCAATCCTACAGGACATGAGCATTGAATTTGACACTTTGCATGAAGAATACAAAGAGCTGGGAAGTGAATTGGCACAGAATGAACTAAAAGCATCGTCACGAAGAAAGCATACTGGCAGAATGAGGGAGGTCAGACAGGGAATTAAGAGAATGGAGAAGTTAATGAATTCAGTCTCTGGGTTTCAAGCTGCCATCAAATCGTTGATTAGTGAGACTCCTAACGTCCAGGAAGTATTATTAATTCTTGGAGCAACCCCACTGCGGCCGCAATATGTTTATGAACTGTGCTTTTCACATAAAAATGTTGTGGTAAGAGGTGCAGATTACTTCGTCAAGCACAAAGCAGCAGAAGTTCTTTCAAGAAAGGCTATTCGAACATTAATCTCAAAGGATGCTGGGTCTGCCTCGTATCCAGGCCCTACTAAGTTGTTTCTATTGGTGAAGGCCCCTTCCTCTATCAATCTGCCCTTGCACTTCATTCCAAAACGTGAATTCCGGTATAGCAAAAAGATAAAGCCCTTCAAATTACGATTTAAATGCAAAGGCCAAATCCACCAGATGAATGATCCTGGTCCTGATCGTGAATTTCAAGTTGGAAACTCTGATGACTTGGCCAACTCTTCAGTAGAAGATTCAATCTGGTTTCAATGTCGACATACAATCAAGGGGATAGCATTCAACAGACCTGATGAAGATTGAAAGTGTCGACTGACAAAGTTAAGTAAACACTAACCTGTAAACTTGCAAATGAATTGCTTCTAATTGTATTTTGTAGGCCAAAAATCCTTGACCCTCGAGATTTTAGCTTTCGATATGCAGCAGGTGATCTGGACTTGGATTTACATCCTTTTAGCTATAATTTCAATGGTGGCGATTTAAGTAAACTTCTATATTGTCCTTCAGCTATTAAAATGGTGAATCTTGGTTAAGTCTTCTTACTACCAAAGATGCTAAGCTTTGTAATCTCAAACCGTGCTTTGTCTAACTTGG

Coding sequence (CDS)

ATGGAGGGAGAAGGTACCTCAGAGATGGAGTATACGGAGATTGAATCCTCCGCCGATTACTTCGACAGCTCCATACTGTTCAATATCATCAACGATGTCTCCGCCTTCGTCTTGTACATGCACCAACAAGTCCCTTCAATCCTACAGGACATGAGCATTGAATTTGACACTTTGCATGAAGAATACAAAGAGCTGGGAAGTGAATTGGCACAGAATGAACTAAAAGCATCGTCACGAAGAAAGCATACTGGCAGAATGAGGGAGGTCAGACAGGGAATTAAGAGAATGGAGAAGTTAATGAATTCAGTCTCTGGGTTTCAAGCTGCCATCAAATCGTTGATTAGTGAGACTCCTAACGTCCAGGAAGTATTATTAATTCTTGGAGCAACCCCACTGCGGCCGCAATATGTTTATGAACTGTGCTTTTCACATAAAAATGTTGTGGTAAGAGGTGCAGATTACTTCGTCAAGCACAAAGCAGCAGAAGTTCTTTCAAGAAAGGCTATTCGAACATTAATCTCAAAGGATGCTGGGTCTGCCTCGTATCCAGGCCCTACTAAGTTGTTTCTATTGGTGAAGGCCCCTTCCTCTATCAATCTGCCCTTGCACTTCATTCCAAAACGTGAATTCCGGTATAGCAAAAAGATAAAGCCCTTCAAATTACGATTTAAATGCAAAGGCCAAATCCACCAGATGAATGATCCTGGTCCTGATCGTGAATTTCAAGTTGGAAACTCTGATGACTTGGCCAACTCTTCAGTAGAAGATTCAATCTGGTTTCAATGTCGACATACAATCAAGGGGATAGCATTCAACAGACCTGATGAAGATTGA

Protein sequence

MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHEEYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNVQEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDREFQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED

Homology

[Close]

BLAST of Carg07242-RA vs. NCBI nr
Match: XP_022991769.1 (uncharacterized protein LOC111488302 [Cucurbita maxima])

HSP 1 Score: 536.6 bits (1381), Expect = 5.1e-149
Identity = 272/277 (98.19%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEGTSEMEYTEIESSADYFDSS+LFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE
Sbjct: 34  MEGEGTSEMEYTEIESSADYFDSSLLFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 93

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV
Sbjct: 94  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 153

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           QEVLLILGATPLRPQYVYELCFSHKN VVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA
Sbjct: 154 QEVLLILGATPLRPQYVYELCFSHKNAVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 213

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCK QIHQMNDPGPDRE
Sbjct: 214 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKAQIHQMNDPGPDRE 273

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
           FQVGNSDDL NSSVEDSIWFQCRH IKGIAFNRPDED
Sbjct: 274 FQVGNSDDLVNSSVEDSIWFQCRHAIKGIAFNRPDED 310

[Close]

BLAST of Carg07242-RA vs. NCBI nr
Match: XP_023548798.1 (uncharacterized protein LOC111807345 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 535.4 bits (1378), Expect = 1.1e-148
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE
Sbjct: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIK+LISETPNV
Sbjct: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKTLISETPNV 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA
Sbjct: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCK QIHQMNDPG DRE
Sbjct: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKAQIHQMNDPGLDRE 240

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
           FQVGNSDDLANSSVEDSIWFQCRH IKGIAFNRPDED
Sbjct: 241 FQVGNSDDLANSSVEDSIWFQCRHAIKGIAFNRPDED 277

[Close]

BLAST of Carg07242-RA vs. NCBI nr
Match: XP_022953906.1 (uncharacterized protein LOC111456309 [Cucurbita moschata])

HSP 1 Score: 531.2 bits (1367), Expect = 2.1e-147
Identity = 272/277 (98.19%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE
Sbjct: 37  MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 96

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVS FQAAIKSLISET NV
Sbjct: 97  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSRFQAAIKSLISETSNV 156

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA
Sbjct: 157 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 216

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCK QIHQMNDPGPDRE
Sbjct: 217 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKAQIHQMNDPGPDRE 276

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
           FQVGNSDDLANSSVEDSIWFQCRH IKGIAFNR DED
Sbjct: 277 FQVGNSDDLANSSVEDSIWFQCRHAIKGIAFNRSDED 313

[Close]

BLAST of Carg07242-RA vs. NCBI nr
Match: XP_023548796.1 (uncharacterized protein LOC111807345 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548797.1 uncharacterized protein LOC111807345 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 530.8 bits (1366), Expect = 2.8e-147
Identity = 273/278 (98.20%), Postives = 274/278 (98.56%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE
Sbjct: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIK+LISETPNV
Sbjct: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKTLISETPNV 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRK-AIRTLISKDAGS 180
           QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRK AIRTLISKDAGS
Sbjct: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKQAIRTLISKDAGS 180

Query: 181 ASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDR 240
           ASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCK QIHQMNDPG DR
Sbjct: 181 ASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKAQIHQMNDPGLDR 240

Query: 241 EFQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
           EFQVGNSDDLANSSVEDSIWFQCRH IKGIAFNRPDED
Sbjct: 241 EFQVGNSDDLANSSVEDSIWFQCRHAIKGIAFNRPDED 278

[Close]

BLAST of Carg07242-RA vs. NCBI nr
Match: XP_008451371.1 (PREDICTED: uncharacterized protein LOC103492681 isoform X1 [Cucumis melo])

HSP 1 Score: 487.3 bits (1253), Expect = 3.5e-134
Identity = 248/277 (89.53%), Postives = 256/277 (92.42%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEG SEMEYTEIESSAD FDSSILFNIINDVSAFVLYMHQQ+PS LQDMSIEFDTLHE
Sbjct: 1   MEGEGRSEMEYTEIESSADCFDSSILFNIINDVSAFVLYMHQQLPSTLQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQ AIKSLISE PN+
Sbjct: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQVAIKSLISEAPNI 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           +EVLLILGATPLRPQYVYE+CFSHK   +RGAD FVKHKAAEVLSRKAIRTLISKDAGS 
Sbjct: 121 EEVLLILGATPLRPQYVYEMCFSHKRFGLRGADNFVKHKAAEVLSRKAIRTLISKDAGSV 180

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSS NLPLHFIPKREFRYS+KI PFKLRFKCK QI QM +PG DRE
Sbjct: 181 SYPGPTKLFLLVKAPSSFNLPLHFIPKREFRYSRKIVPFKLRFKCKAQIQQMKNPGHDRE 240

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
             VGNSDDL NSSVED IWFQCRH IKG+AFNRPDED
Sbjct: 241 SHVGNSDDLTNSSVEDPIWFQCRHAIKGLAFNRPDED 277

[Close]

BLAST of Carg07242-RA vs. TAIR10
Match: AT1G03180.1 (unknown protein)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-68
Identity = 137/278 (49.28%), Postives = 187/278 (67.27%), Query Frame = 0


Query: 2   EGEGTSEMEY-TEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 61
           EGEGT+E  Y  +I ++A     S +F+IIND+  FVLYMHQQ+PS+LQDMS+EF+ L  
Sbjct: 5   EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVLQDMSLEFEGLQT 64

Query: 62  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 121
           E+ +L + LA+ ++K   RRK   R REV+  IK++EKLM ++S  ++A++ +I E P +
Sbjct: 65  EFMDLETNLAEPQVKPLVRRKLMSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPGI 124

Query: 122 QEVLLILGATPLRPQYVYELCFSHKNVVVRGAD-YFVKHKAAEVLSRKAIRTLISKDAGS 181
           Q+V+LILG +PLRPQ  YEL F+ +   V G +  F K KAAE LS+K IR LIS  AGS
Sbjct: 125 QKVVLILGGSPLRPQNAYELLFTQRRDHVLGYEGDFAKSKAAEALSKKTIRALISTGAGS 184

Query: 182 ASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDR 241
            SYPGP +LF+LV AP ++NLP HF+PKR+FRY++K  P KLRFKC+ Q +  N P    
Sbjct: 185 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATNSP---- 244

Query: 242 EFQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
                           D IW+QCRH IKG+AF++P E+
Sbjct: 245 -------------PTNDLIWYQCRHVIKGLAFHQPVEE 265

[Close]

BLAST of Carg07242-RA vs. TrEMBL
Match: tr|A0A1S3BSF3|A0A1S3BSF3_CUCME (uncharacterized protein LOC103492681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492681 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 2.3e-134
Identity = 248/277 (89.53%), Postives = 256/277 (92.42%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEG SEMEYTEIESSAD FDSSILFNIINDVSAFVLYMHQQ+PS LQDMSIEFDTLHE
Sbjct: 1   MEGEGRSEMEYTEIESSADCFDSSILFNIINDVSAFVLYMHQQLPSTLQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQ AIKSLISE PN+
Sbjct: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQVAIKSLISEAPNI 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           +EVLLILGATPLRPQYVYE+CFSHK   +RGAD FVKHKAAEVLSRKAIRTLISKDAGS 
Sbjct: 121 EEVLLILGATPLRPQYVYEMCFSHKRFGLRGADNFVKHKAAEVLSRKAIRTLISKDAGSV 180

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSS NLPLHFIPKREFRYS+KI PFKLRFKCK QI QM +PG DRE
Sbjct: 181 SYPGPTKLFLLVKAPSSFNLPLHFIPKREFRYSRKIVPFKLRFKCKAQIQQMKNPGHDRE 240

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
             VGNSDDL NSSVED IWFQCRH IKG+AFNRPDED
Sbjct: 241 SHVGNSDDLTNSSVEDPIWFQCRHAIKGLAFNRPDED 277

[Close]

BLAST of Carg07242-RA vs. TrEMBL
Match: tr|A0A0A0K8W9|A0A0A0K8W9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390030 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 2.6e-133
Identity = 246/277 (88.81%), Postives = 253/277 (91.34%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEG+SEMEYTEIESS D FDSSILFNIINDVSAFVLYMHQQVPS LQDMSIEFDTLHE
Sbjct: 1   MEGEGSSEMEYTEIESSTDCFDSSILFNIINDVSAFVLYMHQQVPSTLQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSEL QNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQ AIKSLISE PN+
Sbjct: 61  EYKELGSELEQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQVAIKSLISEAPNI 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           +EVLLILGATPLRPQYVYE+CFSHK   +RGAD F KHKAAEVLSRKAIRTLISKDAGS 
Sbjct: 121 EEVLLILGATPLRPQYVYEMCFSHKRFALRGADNFAKHKAAEVLSRKAIRTLISKDAGSV 180

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYPGPTKLFLLVKAPSS NLPLHFIPKREFRYS+KI PFKLRFKCK QI QM  P  DRE
Sbjct: 181 SYPGPTKLFLLVKAPSSFNLPLHFIPKREFRYSRKIVPFKLRFKCKAQIQQMKHPDHDRE 240

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
            QVGNSDDL NSSVED IWFQCRH IKG+AFNRPDED
Sbjct: 241 SQVGNSDDLTNSSVEDPIWFQCRHAIKGLAFNRPDED 277

[Close]

BLAST of Carg07242-RA vs. TrEMBL
Match: tr|A0A1S3BQR2|A0A1S3BQR2_CUCME (uncharacterized protein LOC103492681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492681 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.8e-110
Identity = 217/277 (78.34%), Postives = 224/277 (80.87%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEGEG SEMEYTEIESSAD FDSSILFNIINDVSAFVLYMHQQ+PS LQDMSIEFDTLHE
Sbjct: 1   MEGEGRSEMEYTEIESSADCFDSSILFNIINDVSAFVLYMHQQLPSTLQDMSIEFDTLHE 60

Query: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNV 120
           EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQ AIKSLISE PN+
Sbjct: 61  EYKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQVAIKSLISEAPNI 120

Query: 121 QEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSA 180
           +EVLLILGATPLRPQYVYE+CFSHK   +RGAD FVKHKAAEVLSRKAIRTLISKDAGS 
Sbjct: 121 EEVLLILGATPLRPQYVYEMCFSHKRFGLRGADNFVKHKAAEVLSRKAIRTLISKDAGSV 180

Query: 181 SYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDRE 240
           SYP                                  PFKLRFKCK QI QM +PG DRE
Sbjct: 181 SYP---------------------------------VPFKLRFKCKAQIQQMKNPGHDRE 240

Query: 241 FQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
             VGNSDDL NSSVED IWFQCRH IKG+AFNRPDED
Sbjct: 241 SHVGNSDDLTNSSVEDPIWFQCRHAIKGLAFNRPDED 244

[Close]

BLAST of Carg07242-RA vs. TrEMBL
Match: tr|A0A061DPQ6|A0A061DPQ6_THECC (F15k9.21, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_004401 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.5e-88
Identity = 166/275 (60.36%), Postives = 214/275 (77.82%), Query Frame = 0


Query: 2   EGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHEE 61
           EGEG+SEM+ TEIE++A++ D S++F+++ D   FVLYMHQQ+PSILQD+S+EF+++H E
Sbjct: 5   EGEGSSEMDLTEIETTAEFLDGSVIFHLVKDAIGFVLYMHQQIPSILQDISLEFESMHAE 64

Query: 62  YKELGSELAQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISETPNVQ 121
           YKEL  +LA+ E+KAS RRKH GRMRE +QGI+RMEK MNSVS  Q A++ +ISE PN+Q
Sbjct: 65  YKELEMDLAKTEVKASLRRKHVGRMRECKQGIRRMEKFMNSVSCLQTALQLMISEIPNIQ 124

Query: 122 EVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDAGSAS 181
           EV+L+LG +P+RPQ+VY++ FSH N        F+K K AE LS+KAIR LIS+ AGS+S
Sbjct: 125 EVILVLGTSPIRPQHVYQMYFSHSNAAPSVEADFIKGKTAEGLSKKAIRALISRGAGSSS 184

Query: 182 YPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGPDREF 241
           YPGPTKLFL+VKAP+S NLPLHF+PKR+FRYSKKI PF+LRF+C+ Q  +++  G     
Sbjct: 185 YPGPTKLFLMVKAPTSFNLPLHFLPKRDFRYSKKIVPFRLRFRCRTQGLEIDASG--HGS 244

Query: 242 QVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDE 277
               S  L NSS  D IWFQCRH IKGIAF  P+E
Sbjct: 245 LSSRSTGLINSSSSDFIWFQCRHAIKGIAFKTPEE 277

[Close]

BLAST of Carg07242-RA vs. TrEMBL
Match: tr|A0A2I4E0K5|A0A2I4E0K5_9ROSI (uncharacterized protein LOC108985190 isoform X2 OS=Juglans regia OX=51240 GN=LOC108985190 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 4.3e-88
Identity = 172/280 (61.43%), Postives = 215/280 (76.79%), Query Frame = 0


Query: 1   MEGEGTSEMEYTEIESSADYFDSSILFNIINDVSAFVLYMHQQVPSILQDMSIEFDTLHE 60
           MEG+G SE E  EIE++AD  DSS++F+I+NDV  FVLYMHQQ+PS+LQDMS+EFDT   
Sbjct: 1   MEGQGNSETECMEIETTADSLDSSVVFHIVNDVLGFVLYMHQQIPSVLQDMSLEFDTFRT 60

Query: 61  EYKELGSEL-AQNELKAS--SRRKHTGRMREVRQGIKRMEKLMNSVSGFQAAIKSLISET 120
           EY EL + L  QN+ KAS  SRRKH GRMR+ ++GI+R+EKLMN++S  Q A+K +ISE 
Sbjct: 61  EYAELETALTTQNDAKASSLSRRKHIGRMRDAKKGIRRLEKLMNTISNLQTALKQVISEF 120

Query: 121 PNVQEVLLILGATPLRPQYVYELCFSHKNVVVRGADYFVKHKAAEVLSRKAIRTLISKDA 180
           PN++ V+L+LGA+P+RP++VYELCFSH     RG   F K +AA+ LSRKAIRTL+SK A
Sbjct: 121 PNIEGVVLVLGASPIRPRHVYELCFSHGKAAARGEVDFSKSRAADGLSRKAIRTLVSKGA 180

Query: 181 GSASYPGPTKLFLLVKAPSSINLPLHFIPKREFRYSKKIKPFKLRFKCKGQIHQMNDPGP 240
           GS SYPGP+KLFLLVKAPSS NLPLHF+PKR+FR+SKKI PF+LR KCK Q         
Sbjct: 181 GSGSYPGPSKLFLLVKAPSSFNLPLHFLPKRDFRFSKKIVPFRLRLKCKTQ--DKKTGAL 240

Query: 241 DREFQVGNSDDLANSSVEDSIWFQCRHTIKGIAFNRPDED 278
           DR  Q GNS  L +S+ ++ IWFQCRHTIKG+A   P E+
Sbjct: 241 DRVCQTGNSISLTDSTSDNLIWFQCRHTIKGLASKTPTEE 278

The following BLAST results are available for this feature:

BLAST of Carg07242-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991769.1	5.1e-149	98.19	uncharacterized protein LOC111488302 [Cucurbita maxima]	[more]
XP_023548798.1	1.1e-148	98.56	uncharacterized protein LOC111807345 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022953906.1	2.1e-147	98.19	uncharacterized protein LOC111456309 [Cucurbita moschata]	[more]
XP_023548796.1	2.8e-147	98.20	uncharacterized protein LOC111807345 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_008451371.1	3.5e-134	89.53	PREDICTED: uncharacterized protein LOC103492681 isoform X1 [Cucumis melo]	[more]

BLAST of Carg07242-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G03180.1	1.4e-68	49.28	unknown protein	[more]

BLAST of Carg07242-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07242-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BSF3\|A0A1S3BSF3_CUCME	2.3e-134	89.53	uncharacterized protein LOC103492681 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K8W9\|A0A0A0K8W9_CUCSA	2.6e-133	88.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390030 PE=4 SV=1	[more]
tr\|A0A1S3BQR2\|A0A1S3BQR2_CUCME	1.8e-110	78.34	uncharacterized protein LOC103492681 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A061DPQ6\|A0A061DPQ6_THECC	2.5e-88	60.36	F15k9.21, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_004401 PE=4 SV=1	[more]
tr\|A0A2I4E0K5\|A0A2I4E0K5_9ROSI	4.3e-88	61.43	uncharacterized protein LOC108985190 isoform X2 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg07242	Carg07242	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg07242-RA	Carg07242-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07242-RA.three_prime_UTR.1	Carg07242-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07242-RA.CDS.7	Carg07242-RA.CDS.7	CDS
Carg07242-RA.CDS.6	Carg07242-RA.CDS.6	CDS
Carg07242-RA.CDS.5	Carg07242-RA.CDS.5	CDS
Carg07242-RA.CDS.4	Carg07242-RA.CDS.4	CDS
Carg07242-RA.CDS.3	Carg07242-RA.CDS.3	CDS
Carg07242-RA.CDS.2	Carg07242-RA.CDS.2	CDS
Carg07242-RA.CDS.1	Carg07242-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07242-RA.five_prime_UTR.1	Carg07242-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg07242-RA.exon.7	Carg07242-RA.exon.7	exon
Carg07242-RA.exon.6	Carg07242-RA.exon.6	exon
Carg07242-RA.exon.5	Carg07242-RA.exon.5	exon
Carg07242-RA.exon.4	Carg07242-RA.exon.4	exon
Carg07242-RA.exon.3	Carg07242-RA.exon.3	exon
Carg07242-RA.exon.2	Carg07242-RA.exon.2	exon
Carg07242-RA.exon.1	Carg07242-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.900.20		coord: 13..270 e-value: 6.5E-23 score: 82.9
None	No IPR available	PANTHER	PTHR15681	FAMILY NOT NAMED	coord: 8..270